HEADER VIRAL PROTEIN 19-NOV-20 7DIY TITLE CRYSTAL STRUCTURE OF SARS-COV-2 NSP10 BOUND TO NSP14-EXORIBONUCLEASE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NSP10 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4254-4392; COMPND 5 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NSP14-EXON PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 5926-6214; COMPND 11 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 12 EC: 3.1.13.-; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 12 2; SOURCE 13 ORGANISM_COMMON: 2019-NCOV; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 GENE: REP, 1A-1B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS EXORIBONUCLEASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LIN,H.CHEN,Z.M.CHEN,F.L.YANG,F.YE,Y.ZHENG,J.YANG,X.LIN,H.L.SUN, AUTHOR 2 L.L.WANG,A.WEN,Y.CAO,G.W.LU REVDAT 3 29-NOV-23 7DIY 1 REMARK REVDAT 2 02-JUN-21 7DIY 1 JRNL REVDAT 1 19-MAY-21 7DIY 0 JRNL AUTH S.LIN,H.CHEN,Z.CHEN,F.YANG,F.YE,Y.ZHENG,J.YANG,X.LIN,H.SUN, JRNL AUTH 2 L.WANG,A.WEN,H.DONG,Q.XIAO,D.DENG,Y.CAO,G.LU JRNL TITL CRYSTAL STRUCTURE OF SARS-COV-2 NSP10 BOUND TO NSP14-EXON JRNL TITL 2 DOMAIN REVEALS AN EXORIBONUCLEASE WITH BOTH STRUCTURAL AND JRNL TITL 3 FUNCTIONAL INTEGRITY. JRNL REF NUCLEIC ACIDS RES. V. 49 5382 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33956156 JRNL DOI 10.1093/NAR/GKAB320 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 11506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7710 - 4.2741 0.99 2871 166 0.1916 0.2136 REMARK 3 2 4.2741 - 3.3929 1.00 2772 144 0.2208 0.2707 REMARK 3 3 3.3929 - 2.9642 1.00 2761 132 0.2805 0.3195 REMARK 3 4 2.9642 - 2.6930 0.93 2539 121 0.3009 0.3595 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3298 REMARK 3 ANGLE : 0.840 4483 REMARK 3 CHIRALITY : 0.053 499 REMARK 3 PLANARITY : 0.006 576 REMARK 3 DIHEDRAL : 15.243 1940 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -8.3539 5.7328 -14.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.4324 T22: 0.3866 REMARK 3 T33: 0.4419 T12: 0.0124 REMARK 3 T13: -0.0236 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.5608 L22: 0.3739 REMARK 3 L33: 1.6127 L12: 0.1191 REMARK 3 L13: -0.3596 L23: -0.1559 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.0300 S13: 0.0376 REMARK 3 S21: -0.0527 S22: 0.0214 S23: 0.0149 REMARK 3 S31: 0.0160 S32: 0.0614 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5C8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MOPS, 0.1 M MAGNESIUM ACETATE REMARK 280 TETRAHYDRATE AND 12 % W/V PEG 8000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.96450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.86950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.14000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.86950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.96450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.14000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 132 REMARK 465 LEU A 133 REMARK 465 ARG A 134 REMARK 465 GLU A 135 REMARK 465 PRO A 136 REMARK 465 MET A 137 REMARK 465 LEU A 138 REMARK 465 GLN A 139 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 418 O HOH B 422 1.88 REMARK 500 O PHE B 89 O HOH B 401 1.99 REMARK 500 N ASN B 176 O HOH B 402 2.02 REMARK 500 OD1 ASP B 90 O HOH B 403 2.12 REMARK 500 O LYS B 32 O HOH B 404 2.15 REMARK 500 OG1 THR A 12 OD1 ASN B 63 2.16 REMARK 500 OE2 GLU A 6 ND2 ASN A 10 2.16 REMARK 500 OE2 GLU B 92 O HOH B 405 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS B 155 OG SER B 221 4455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 84 CD PRO A 84 N -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 97 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 61 156.78 171.78 REMARK 500 TYR A 126 53.19 -148.62 REMARK 500 THR B 16 -148.95 -116.04 REMARK 500 LEU B 38 -167.99 -129.72 REMARK 500 MET B 62 64.59 -103.27 REMARK 500 ARG B 98 -67.34 -106.17 REMARK 500 LEU B 107 -60.31 -107.69 REMARK 500 ALA B 187 80.57 54.10 REMARK 500 PHE B 198 20.26 -154.59 REMARK 500 LEU B 209 6.91 80.24 REMARK 500 ASP B 222 68.25 -66.50 REMARK 500 SER B 230 43.68 -80.50 REMARK 500 GLN B 246 7.51 -69.47 REMARK 500 ASP B 258 1.65 -67.53 REMARK 500 HIS B 268 81.39 -65.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 74 SG REMARK 620 2 CYS A 77 SG 130.9 REMARK 620 3 HIS A 83 NE2 112.2 99.7 REMARK 620 4 CYS A 90 SG 98.0 106.0 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 117 SG REMARK 620 2 CYS A 120 SG 107.5 REMARK 620 3 CYS A 130 SG 95.5 103.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 90 OD1 REMARK 620 2 GLU B 191 OE1 66.0 REMARK 620 3 HOH B 403 O 61.7 82.3 REMARK 620 4 HOH B 409 O 70.4 133.7 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 207 SG REMARK 620 2 CYS B 210 SG 118.2 REMARK 620 3 CYS B 226 SG 114.7 121.3 REMARK 620 4 HIS B 229 ND1 109.4 103.2 80.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 257 NE2 REMARK 620 2 CYS B 261 SG 91.7 REMARK 620 3 HIS B 264 ND1 117.3 102.3 REMARK 620 4 CYS B 279 SG 98.7 124.3 119.7 REMARK 620 N 1 2 3 DBREF 7DIY A 1 139 UNP P0DTD1 R1AB_SARS2 4254 4392 DBREF 7DIY B 1 289 UNP P0DTD1 R1AB_SARS2 5926 6214 SEQADV 7DIY GLY A -4 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY PRO A -3 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY LEU A -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY GLY A -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY SER A 0 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY GLY B -4 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY PRO B -3 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY ALA B -2 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY GLY B -1 UNP P0DTD1 EXPRESSION TAG SEQADV 7DIY SER B 0 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 144 GLY PRO LEU GLY SER ALA GLY ASN ALA THR GLU VAL PRO SEQRES 2 A 144 ALA ASN SER THR VAL LEU SER PHE CYS ALA PHE ALA VAL SEQRES 3 A 144 ASP ALA ALA LYS ALA TYR LYS ASP TYR LEU ALA SER GLY SEQRES 4 A 144 GLY GLN PRO ILE THR ASN CYS VAL LYS MET LEU CYS THR SEQRES 5 A 144 HIS THR GLY THR GLY GLN ALA ILE THR VAL THR PRO GLU SEQRES 6 A 144 ALA ASN MET ASP GLN GLU SER PHE GLY GLY ALA SER CYS SEQRES 7 A 144 CYS LEU TYR CYS ARG CYS HIS ILE ASP HIS PRO ASN PRO SEQRES 8 A 144 LYS GLY PHE CYS ASP LEU LYS GLY LYS TYR VAL GLN ILE SEQRES 9 A 144 PRO THR THR CYS ALA ASN ASP PRO VAL GLY PHE THR LEU SEQRES 10 A 144 LYS ASN THR VAL CYS THR VAL CYS GLY MET TRP LYS GLY SEQRES 11 A 144 TYR GLY CYS SER CYS ASP GLN LEU ARG GLU PRO MET LEU SEQRES 12 A 144 GLN SEQRES 1 B 294 GLY PRO ALA GLY SER ALA GLU ASN VAL THR GLY LEU PHE SEQRES 2 B 294 LYS ASP CYS SER LYS VAL ILE THR GLY LEU HIS PRO THR SEQRES 3 B 294 GLN ALA PRO THR HIS LEU SER VAL ASP THR LYS PHE LYS SEQRES 4 B 294 THR GLU GLY LEU CYS VAL ASP ILE PRO GLY ILE PRO LYS SEQRES 5 B 294 ASP MET THR TYR ARG ARG LEU ILE SER MET MET GLY PHE SEQRES 6 B 294 LYS MET ASN TYR GLN VAL ASN GLY TYR PRO ASN MET PHE SEQRES 7 B 294 ILE THR ARG GLU GLU ALA ILE ARG HIS VAL ARG ALA TRP SEQRES 8 B 294 ILE GLY PHE ASP VAL GLU GLY CYS HIS ALA THR ARG GLU SEQRES 9 B 294 ALA VAL GLY THR ASN LEU PRO LEU GLN LEU GLY PHE SER SEQRES 10 B 294 THR GLY VAL ASN LEU VAL ALA VAL PRO THR GLY TYR VAL SEQRES 11 B 294 ASP THR PRO ASN ASN THR ASP PHE SER ARG VAL SER ALA SEQRES 12 B 294 LYS PRO PRO PRO GLY ASP GLN PHE LYS HIS LEU ILE PRO SEQRES 13 B 294 LEU MET TYR LYS GLY LEU PRO TRP ASN VAL VAL ARG ILE SEQRES 14 B 294 LYS ILE VAL GLN MET LEU SER ASP THR LEU LYS ASN LEU SEQRES 15 B 294 SER ASP ARG VAL VAL PHE VAL LEU TRP ALA HIS GLY PHE SEQRES 16 B 294 GLU LEU THR SER MET LYS TYR PHE VAL LYS ILE GLY PRO SEQRES 17 B 294 GLU ARG THR CYS CYS LEU CYS ASP ARG ARG ALA THR CYS SEQRES 18 B 294 PHE SER THR ALA SER ASP THR TYR ALA CYS TRP HIS HIS SEQRES 19 B 294 SER ILE GLY PHE ASP TYR VAL TYR ASN PRO PHE MET ILE SEQRES 20 B 294 ASP VAL GLN GLN TRP GLY PHE THR GLY ASN LEU GLN SER SEQRES 21 B 294 ASN HIS ASP LEU TYR CYS GLN VAL HIS GLY ASN ALA HIS SEQRES 22 B 294 VAL ALA SER CYS ASP ALA ILE MET THR ARG CYS LEU ALA SEQRES 23 B 294 VAL HIS GLU CYS PHE VAL LYS ARG HET ZN A 201 1 HET ZN A 202 1 HET ZN B 301 1 HET ZN B 302 1 HET MG B 303 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 MG MG 2+ FORMUL 8 HOH *29(H2 O) HELIX 1 AA1 VAL A 7 ALA A 9 5 3 HELIX 2 AA2 ASN A 10 PHE A 19 1 10 HELIX 3 AA3 ASP A 22 SER A 33 1 12 HELIX 4 AA4 ALA A 71 CYS A 73 5 3 HELIX 5 AA5 CYS A 74 HIS A 80 1 7 HELIX 6 AA6 THR A 102 ALA A 104 5 3 HELIX 7 AA7 ASP A 106 ASN A 114 1 9 HELIX 8 AA8 THR B 25 VAL B 29 5 5 HELIX 9 AA9 ASP B 30 LYS B 32 5 3 HELIX 10 AB1 THR B 75 HIS B 82 1 8 HELIX 11 AB2 GLY B 143 LYS B 155 5 13 HELIX 12 AB3 PRO B 158 LYS B 175 1 18 HELIX 13 AB4 HIS B 188 LYS B 196 1 9 HELIX 14 AB5 GLN B 245 GLY B 248 5 4 HELIX 15 AB6 ASN B 252 ASP B 258 1 7 HELIX 16 AB7 VAL B 269 VAL B 287 1 19 SHEET 1 AA1 3 ILE A 55 THR A 56 0 SHEET 2 AA1 3 TYR A 96 PRO A 100 -1 O TYR A 96 N THR A 56 SHEET 3 AA1 3 GLN A 65 GLY A 69 -1 N PHE A 68 O VAL A 97 SHEET 1 AA2 2 LYS B 34 THR B 35 0 SHEET 2 AA2 2 LEU B 38 CYS B 39 -1 O LEU B 38 N THR B 35 SHEET 1 AA3 3 ARG B 53 ILE B 55 0 SHEET 2 AA3 3 THR B 122 ASP B 126 -1 O ASP B 126 N ARG B 53 SHEET 3 AA3 3 THR B 131 ARG B 135 -1 O ASP B 132 N VAL B 125 SHEET 1 AA4 4 ASN B 116 VAL B 118 0 SHEET 2 AA4 4 ASN B 104 PHE B 111 -1 N LEU B 109 O LEU B 117 SHEET 3 AA4 4 TRP B 86 ALA B 96 -1 N ASP B 90 O GLY B 110 SHEET 4 AA4 4 ALA B 138 LYS B 139 -1 O LYS B 139 N HIS B 95 SHEET 1 AA5 5 ASN B 116 VAL B 118 0 SHEET 2 AA5 5 ASN B 104 PHE B 111 -1 N LEU B 109 O LEU B 117 SHEET 3 AA5 5 TRP B 86 ALA B 96 -1 N ASP B 90 O GLY B 110 SHEET 4 AA5 5 VAL B 182 LEU B 185 1 O VAL B 182 N ILE B 87 SHEET 5 AA5 5 PHE B 240 ASP B 243 1 O PHE B 240 N PHE B 183 SHEET 1 AA6 4 VAL B 199 LYS B 200 0 SHEET 2 AA6 4 TYR B 235 TYR B 237 1 O VAL B 236 N LYS B 200 SHEET 3 AA6 4 CYS B 216 SER B 218 -1 N PHE B 217 O TYR B 235 SHEET 4 AA6 4 THR B 223 ALA B 225 -1 O THR B 223 N SER B 218 LINK SG CYS A 74 ZN ZN A 201 1555 1555 2.25 LINK SG CYS A 77 ZN ZN A 201 1555 1555 2.31 LINK NE2 HIS A 83 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 90 ZN ZN A 201 1555 1555 2.12 LINK SG CYS A 117 ZN ZN A 202 1555 1555 2.28 LINK SG CYS A 120 ZN ZN A 202 1555 1555 2.45 LINK SG CYS A 130 ZN ZN A 202 1555 1555 2.32 LINK OD1 ASP B 90 MG MG B 303 1555 1555 2.07 LINK OE1 GLU B 191 MG MG B 303 1555 1555 2.73 LINK SG CYS B 207 ZN ZN B 301 1555 1555 2.23 LINK SG CYS B 210 ZN ZN B 301 1555 1555 2.20 LINK SG CYS B 226 ZN ZN B 301 1555 1555 2.23 LINK ND1 HIS B 229 ZN ZN B 301 1555 1555 2.16 LINK NE2 HIS B 257 ZN ZN B 302 1555 1555 2.16 LINK SG CYS B 261 ZN ZN B 302 1555 1555 2.20 LINK ND1 HIS B 264 ZN ZN B 302 1555 1555 2.02 LINK SG CYS B 279 ZN ZN B 302 1555 1555 2.07 LINK MG MG B 303 O HOH B 403 1555 1555 2.06 LINK MG MG B 303 O HOH B 409 1555 1555 2.52 CISPEP 1 TYR A 126 GLY A 127 0 -4.37 CISPEP 2 GLY B 17 LEU B 18 0 -0.72 CISPEP 3 GLY B 156 LEU B 157 0 4.05 CRYST1 53.929 68.280 109.739 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009113 0.00000