HEADER OXIDOREDUCTASE 25-NOV-20 7DKM TITLE PHGDH COVALENTLY LINKED TO ORIDONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, DEHYDROGENASE, COVALENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,Y.LEI REVDAT 3 13-NOV-24 7DKM 1 REMARK REVDAT 2 29-NOV-23 7DKM 1 REMARK REVDAT 1 02-FEB-22 7DKM 0 JRNL AUTH Y.TAN,X.ZHOU,Y.GONG,K.GOU,Y.LUO,D.JIA,L.DAI,Y.ZHAO,Q.SUN JRNL TITL BIOPHYSICAL AND BIOCHEMICAL PROPERTIES OF PHGDH REVEALED BY JRNL TITL 2 STUDIES ON PHGDH INHIBITORS. JRNL REF CELL.MOL.LIFE SCI. V. 79 27 2021 JRNL REFN ESSN 1420-9071 JRNL PMID 34971423 JRNL DOI 10.1007/S00018-021-04022-2 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 63125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3284 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4588 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 1.76000 REMARK 3 B33 (A**2) : -2.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4862 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4663 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6606 ; 1.303 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10862 ; 1.620 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 6.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;32.447 ;22.883 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;13.675 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;13.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5407 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 894 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9525 ; 0.895 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 502 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3294 29.6744 3.1169 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0355 REMARK 3 T33: 0.1156 T12: 0.0404 REMARK 3 T13: -0.0063 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.8776 L22: 1.2598 REMARK 3 L33: 2.9883 L12: 0.1625 REMARK 3 L13: 0.2780 L23: -0.1537 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: 0.1805 S13: 0.3864 REMARK 3 S21: -0.0965 S22: -0.0240 S23: 0.2446 REMARK 3 S31: -0.4368 S32: -0.1898 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 502 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2644 5.7013 27.6475 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.0307 REMARK 3 T33: 0.1187 T12: 0.0525 REMARK 3 T13: -0.0129 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.2526 L22: 0.6406 REMARK 3 L33: 3.1242 L12: 0.2132 REMARK 3 L13: 0.0428 L23: -0.2568 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.1875 S13: -0.5141 REMARK 3 S21: 0.1094 S22: 0.0327 S23: -0.0268 REMARK 3 S31: 0.7159 S32: 0.1584 S33: -0.0602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7DKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1300019577. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66526 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA FORMATE, 20% W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.23500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 MET B 3 REMARK 465 ALA B 4 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 54 -109.49 -103.53 REMARK 500 GLU A 134 66.35 -112.82 REMARK 500 HIS A 206 48.79 -140.09 REMARK 500 ALA A 235 -88.01 -107.58 REMARK 500 ALA A 235 -88.32 -107.58 REMARK 500 ARG B 54 -109.26 -104.42 REMARK 500 VAL B 80 36.11 -140.45 REMARK 500 GLU B 134 69.55 -111.73 REMARK 500 HIS B 206 48.96 -142.34 REMARK 500 ALA B 235 -87.35 -106.98 REMARK 500 ALA B 235 -87.35 -105.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 286 O REMARK 620 2 HOH B 589 O 111.5 REMARK 620 N 1 DBREF 7DKM A 4 308 UNP O43175 SERA_HUMAN 4 308 DBREF 7DKM B 4 308 UNP O43175 SERA_HUMAN 4 308 SEQADV 7DKM MET A 3 UNP O43175 INITIATING METHIONINE SEQADV 7DKM LEU A 309 UNP O43175 EXPRESSION TAG SEQADV 7DKM GLU A 310 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 311 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 312 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 313 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 314 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 315 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS A 316 UNP O43175 EXPRESSION TAG SEQADV 7DKM MET B 3 UNP O43175 INITIATING METHIONINE SEQADV 7DKM LEU B 309 UNP O43175 EXPRESSION TAG SEQADV 7DKM GLU B 310 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 311 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 312 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 313 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 314 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 315 UNP O43175 EXPRESSION TAG SEQADV 7DKM HIS B 316 UNP O43175 EXPRESSION TAG SEQRES 1 A 314 MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER LEU SEQRES 2 A 314 ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY LEU SEQRES 3 A 314 GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU LEU SEQRES 4 A 314 ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL ARG SEQRES 5 A 314 SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA ALA SEQRES 6 A 314 GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY VAL SEQRES 7 A 314 ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY ILE SEQRES 8 A 314 LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 9 A 314 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 10 A 314 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 11 A 314 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 12 A 314 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 13 A 314 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 14 A 314 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 15 A 314 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 16 A 314 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 17 A 314 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 18 A 314 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 19 A 314 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 20 A 314 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 21 A 314 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 22 A 314 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 23 A 314 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 24 A 314 GLN PHE VAL ASP MET VAL LYS LEU GLU HIS HIS HIS HIS SEQRES 25 A 314 HIS HIS SEQRES 1 B 314 MET ALA ASN LEU ARG LYS VAL LEU ILE SER ASP SER LEU SEQRES 2 B 314 ASP PRO CYS CYS ARG LYS ILE LEU GLN ASP GLY GLY LEU SEQRES 3 B 314 GLN VAL VAL GLU LYS GLN ASN LEU SER LYS GLU GLU LEU SEQRES 4 B 314 ILE ALA GLU LEU GLN ASP CYS GLU GLY LEU ILE VAL ARG SEQRES 5 B 314 SER ALA THR LYS VAL THR ALA ASP VAL ILE ASN ALA ALA SEQRES 6 B 314 GLU LYS LEU GLN VAL VAL GLY ARG ALA GLY THR GLY VAL SEQRES 7 B 314 ASP ASN VAL ASP LEU GLU ALA ALA THR ARG LYS GLY ILE SEQRES 8 B 314 LEU VAL MET ASN THR PRO ASN GLY ASN SER LEU SER ALA SEQRES 9 B 314 ALA GLU LEU THR CYS GLY MET ILE MET CYS LEU ALA ARG SEQRES 10 B 314 GLN ILE PRO GLN ALA THR ALA SER MET LYS ASP GLY LYS SEQRES 11 B 314 TRP GLU ARG LYS LYS PHE MET GLY THR GLU LEU ASN GLY SEQRES 12 B 314 LYS THR LEU GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG SEQRES 13 B 314 GLU VAL ALA THR ARG MET GLN SER PHE GLY MET LYS THR SEQRES 14 B 314 ILE GLY TYR ASP PRO ILE ILE SER PRO GLU VAL SER ALA SEQRES 15 B 314 SER PHE GLY VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP SEQRES 16 B 314 PRO LEU CYS ASP PHE ILE THR VAL HIS THR PRO LEU LEU SEQRES 17 B 314 PRO SER THR THR GLY LEU LEU ASN ASP ASN THR PHE ALA SEQRES 18 B 314 GLN CYS LYS LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG SEQRES 19 B 314 GLY GLY ILE VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU SEQRES 20 B 314 GLN SER GLY GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE SEQRES 21 B 314 THR GLU GLU PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS SEQRES 22 B 314 GLU ASN VAL ILE SER CYS PRO HIS LEU GLY ALA SER THR SEQRES 23 B 314 LYS GLU ALA GLN SER ARG CYS GLY GLU GLU ILE ALA VAL SEQRES 24 B 314 GLN PHE VAL ASP MET VAL LYS LEU GLU HIS HIS HIS HIS SEQRES 25 B 314 HIS HIS HET ODN A 401 26 HET NAD A 402 44 HET CL A 403 1 HET CL A 404 1 HET NAD B 401 44 HET NA B 402 1 HET 1PE B 403 16 HETNAM ODN (1BETA,6BETA,7BETA,8ALPHA,9BETA,10ALPHA,13ALPHA,14R, HETNAM 2 ODN 16BETA)-1,6,7,14-TETRAHYDROXY-7,20-EPOXYKAURAN-15-ONE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 ODN C20 H30 O6 FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 CL 2(CL 1-) FORMUL 8 NA NA 1+ FORMUL 9 1PE C10 H22 O6 FORMUL 10 HOH *473(H2 O) HELIX 1 AA1 PRO A 17 GLY A 26 1 10 HELIX 2 AA2 SER A 37 LEU A 45 1 9 HELIX 3 AA3 THR A 60 ALA A 67 1 8 HELIX 4 AA4 ASP A 84 GLY A 92 1 9 HELIX 5 AA5 ASN A 102 GLN A 120 1 19 HELIX 6 AA6 GLN A 120 ASP A 130 1 11 HELIX 7 AA7 ARG A 135 MET A 139 5 5 HELIX 8 AA8 GLY A 154 SER A 166 1 13 HELIX 9 AA9 SER A 179 SER A 185 1 7 HELIX 10 AB1 PRO A 192 TRP A 197 1 6 HELIX 11 AB2 PRO A 198 CYS A 200 5 3 HELIX 12 AB3 LEU A 210 THR A 214 5 5 HELIX 13 AB4 ASN A 218 CYS A 225 1 8 HELIX 14 AB5 ASP A 241 GLY A 252 1 12 HELIX 15 AB6 ARG A 270 HIS A 275 1 6 HELIX 16 AB7 THR A 288 GLU A 310 1 23 HELIX 17 AB8 PRO B 17 GLY B 26 1 10 HELIX 18 AB9 SER B 37 GLN B 46 1 10 HELIX 19 AC1 THR B 60 ALA B 67 1 8 HELIX 20 AC2 ASP B 84 GLY B 92 1 9 HELIX 21 AC3 ASN B 102 GLN B 120 1 19 HELIX 22 AC4 GLN B 120 ASP B 130 1 11 HELIX 23 AC5 GLY B 154 SER B 166 1 13 HELIX 24 AC6 SER B 179 SER B 185 1 7 HELIX 25 AC7 PRO B 192 TRP B 197 1 6 HELIX 26 AC8 PRO B 198 CYS B 200 5 3 HELIX 27 AC9 LEU B 210 THR B 214 5 5 HELIX 28 AD1 ASN B 218 CYS B 225 1 8 HELIX 29 AD2 ASP B 241 GLY B 252 1 12 HELIX 30 AD3 ARG B 270 HIS B 275 1 6 HELIX 31 AD4 THR B 288 GLU B 310 1 23 SHEET 1 AA1 5 GLN A 29 GLU A 32 0 SHEET 2 AA1 5 LYS A 8 ILE A 11 1 N VAL A 9 O GLN A 29 SHEET 3 AA1 5 GLY A 50 VAL A 53 1 O ILE A 52 N LEU A 10 SHEET 4 AA1 5 VAL A 72 ARG A 75 1 O GLY A 74 N LEU A 51 SHEET 5 AA1 5 LEU A 94 MET A 96 1 O MET A 96 N VAL A 73 SHEET 1 AA2 7 GLN A 189 GLN A 190 0 SHEET 2 AA2 7 LYS A 170 TYR A 174 1 N GLY A 173 O GLN A 189 SHEET 3 AA2 7 THR A 147 LEU A 151 1 N LEU A 148 O LYS A 170 SHEET 4 AA2 7 PHE A 202 VAL A 205 1 O PHE A 202 N GLY A 149 SHEET 5 AA2 7 ARG A 230 ASN A 233 1 O VAL A 232 N ILE A 203 SHEET 6 AA2 7 GLY A 256 LEU A 259 1 O ALA A 258 N ASN A 233 SHEET 7 AA2 7 VAL A 278 SER A 280 1 O ILE A 279 N ALA A 257 SHEET 1 AA3 5 GLN B 29 GLU B 32 0 SHEET 2 AA3 5 LYS B 8 ILE B 11 1 N VAL B 9 O GLN B 29 SHEET 3 AA3 5 GLY B 50 VAL B 53 1 O ILE B 52 N LEU B 10 SHEET 4 AA3 5 VAL B 72 ARG B 75 1 O GLY B 74 N LEU B 51 SHEET 5 AA3 5 LEU B 94 MET B 96 1 O MET B 96 N VAL B 73 SHEET 1 AA4 7 GLN B 189 GLN B 190 0 SHEET 2 AA4 7 LYS B 170 TYR B 174 1 N GLY B 173 O GLN B 189 SHEET 3 AA4 7 THR B 147 LEU B 151 1 N LEU B 148 O LYS B 170 SHEET 4 AA4 7 PHE B 202 VAL B 205 1 O PHE B 202 N GLY B 149 SHEET 5 AA4 7 VAL B 229 ASN B 233 1 O VAL B 232 N ILE B 203 SHEET 6 AA4 7 CYS B 254 LEU B 259 1 O ALA B 258 N ASN B 233 SHEET 7 AA4 7 VAL B 278 SER B 280 1 O ILE B 279 N ALA B 257 LINK SG CYS A 18 C14 ODN A 401 1555 1555 1.62 LINK O ALA B 286 NA NA B 402 1555 1555 3.05 LINK NA NA B 402 O HOH B 589 1555 1555 2.87 CISPEP 1 GLU A 265 PRO A 266 0 -2.20 CISPEP 2 GLU B 265 PRO B 266 0 -1.53 CRYST1 43.180 126.470 59.287 90.00 99.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023159 0.000000 0.003968 0.00000 SCALE2 0.000000 0.007907 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017113 0.00000