HEADER OXIDOREDUCTASE 28-NOV-20 7DLM TITLE SHORT CHAIN DEHYDROGENASE (SCR) CRYSTAL STRUCTURE WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONYL REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-REDUCTASE; COMPND 5 EC: 1.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA PARAPSILOSIS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 5480; SOURCE 5 GENE: DQ675534; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMAN FOLD, TETRAMER, TAG-FREE, WILD TYPE WITH NADPH, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.LI,R.Z.ZHANG,F.FOROUHAR,C.WANG,G.T.MONTELIONE,T.SZYPERSKI,Y.XU, AUTHOR 2 J.F.HUNT REVDAT 5 29-NOV-23 7DLM 1 REMARK REVDAT 4 14-SEP-22 7DLM 1 JRNL REVDAT 3 10-AUG-22 7DLM 1 TITLE REVDAT 2 27-JUL-22 7DLM 1 JRNL REVDAT 1 06-APR-22 7DLM 0 JRNL AUTH Y.LI,R.ZHANG,C.WANG,F.FOROUHAR,O.B.CLARKE,S.VOROBIEV, JRNL AUTH 2 S.SINGH,G.T.MONTELIONE,T.SZYPERSKI,Y.XU,J.F.HUNT JRNL TITL OLIGOMERIC INTERACTIONS MAINTAIN ACTIVE-SITE STRUCTURE IN A JRNL TITL 2 NONCOOPERATIVE ENZYME FAMILY. JRNL REF EMBO J. V. 41 08368 2022 JRNL REFN ESSN 1460-2075 JRNL PMID 35801308 JRNL DOI 10.15252/EMBJ.2021108368 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 67149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9900 - 3.8400 1.00 4908 152 0.1538 0.1662 REMARK 3 2 3.8400 - 3.0500 1.00 4751 148 0.1433 0.1461 REMARK 3 3 3.0500 - 2.6600 1.00 4738 150 0.1586 0.1828 REMARK 3 4 2.6600 - 2.4200 1.00 4703 142 0.1459 0.1721 REMARK 3 5 2.4200 - 2.2500 0.99 4641 141 0.1809 0.2023 REMARK 3 6 2.2500 - 2.1100 1.00 4705 141 0.1609 0.1888 REMARK 3 7 2.1100 - 2.0100 1.00 4668 147 0.1829 0.2280 REMARK 3 8 2.0100 - 1.9200 0.99 4579 137 0.2166 0.2715 REMARK 3 9 1.9200 - 1.8500 0.99 4652 154 0.1897 0.2208 REMARK 3 10 1.8500 - 1.7800 0.98 4585 139 0.1685 0.2076 REMARK 3 11 1.7800 - 1.7300 1.00 4630 137 0.1773 0.2089 REMARK 3 12 1.7300 - 1.6800 1.00 4626 138 0.1831 0.2329 REMARK 3 13 1.6800 - 1.6300 1.00 4636 144 0.2045 0.2703 REMARK 3 14 1.6300 - 1.5900 0.93 4326 131 0.2307 0.2783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.167 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.631 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4458 REMARK 3 ANGLE : 1.944 6086 REMARK 3 CHIRALITY : 0.065 680 REMARK 3 PLANARITY : 0.009 764 REMARK 3 DIHEDRAL : 8.997 608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : ADSC HF-4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67312 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM CHLORIDE, 20% PEG REMARK 280 3350, PH 7.0, MICROBATCH, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.06450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.06450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.44750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.44750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.06450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.44750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.06450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.83900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.44750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 586 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 589 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 592 O HOH B 605 1.81 REMARK 500 O HOH A 552 O HOH A 591 1.87 REMARK 500 NZ LYS B 176 O HOH B 401 1.89 REMARK 500 O HOH B 588 O HOH B 614 1.89 REMARK 500 O HOH B 601 O HOH B 630 1.89 REMARK 500 O HOH B 486 O HOH B 610 1.92 REMARK 500 O HOH A 610 O HOH A 634 1.93 REMARK 500 O ASN B 133 O HOH B 402 1.95 REMARK 500 OE1 GLU B 5 O HOH B 403 1.97 REMARK 500 O HOH A 606 O HOH A 639 1.97 REMARK 500 O PRO A 279 O HOH A 401 2.02 REMARK 500 O HOH A 551 O HOH A 607 2.03 REMARK 500 O HOH B 573 O HOH B 608 2.04 REMARK 500 O HOH B 574 O HOH B 598 2.05 REMARK 500 O HOH B 509 O HOH B 602 2.06 REMARK 500 O HOH B 619 O HOH B 627 2.06 REMARK 500 O HOH A 524 O HOH A 559 2.06 REMARK 500 O HOH A 573 O HOH A 631 2.08 REMARK 500 O HOH A 429 O HOH A 595 2.08 REMARK 500 O HOH B 410 O HOH B 559 2.10 REMARK 500 O HOH A 553 O HOH A 621 2.10 REMARK 500 O HOH B 609 O HOH B 613 2.10 REMARK 500 O HOH B 439 O HOH B 519 2.11 REMARK 500 O HOH B 581 O HOH B 625 2.12 REMARK 500 NZ LYS B 10 O HOH B 404 2.12 REMARK 500 O HOH B 575 O HOH B 580 2.12 REMARK 500 O HOH A 579 O HOH A 581 2.13 REMARK 500 O HOH A 423 O HOH A 546 2.14 REMARK 500 O HOH A 614 O HOH A 630 2.14 REMARK 500 N GLY A 2 O HOH A 402 2.14 REMARK 500 O HOH B 594 O HOH B 619 2.14 REMARK 500 O HOH A 588 O HOH A 622 2.18 REMARK 500 O HOH B 567 O HOH B 581 2.19 REMARK 500 O HOH B 416 O HOH B 584 2.19 REMARK 500 O HOH B 412 O HOH B 608 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 536 O HOH B 536 4555 1.26 REMARK 500 O HOH B 488 O HOH B 488 4555 1.75 REMARK 500 O HOH A 460 O HOH A 460 4555 2.08 REMARK 500 O HOH B 633 O HOH B 639 8555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 128 CD GLU A 128 OE2 0.069 REMARK 500 LYS B 10 CE LYS B 10 NZ 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 72 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 GLU A 128 OE1 - CD - OE2 ANGL. DEV. = -44.3 DEGREES REMARK 500 GLU A 128 CG - CD - OE1 ANGL. DEV. = 44.6 DEGREES REMARK 500 GLU A 128 CG - CD - OE2 ANGL. DEV. = -33.5 DEGREES REMARK 500 GLU B 5 OE1 - CD - OE2 ANGL. DEV. = -25.8 DEGREES REMARK 500 GLU B 5 CG - CD - OE1 ANGL. DEV. = 22.5 DEGREES REMARK 500 GLU B 5 CG - CD - OE2 ANGL. DEV. = -15.2 DEGREES REMARK 500 LYS B 10 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LYS B 10 CD - CE - NZ ANGL. DEV. = -24.0 DEGREES REMARK 500 LYS B 24 CB - CG - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 LYS B 24 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 GLU B 128 OE1 - CD - OE2 ANGL. DEV. = -43.4 DEGREES REMARK 500 GLU B 128 CG - CD - OE1 ANGL. DEV. = 46.8 DEGREES REMARK 500 GLU B 128 CG - CD - OE2 ANGL. DEV. = -32.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 106.85 -161.44 REMARK 500 ASN A 66 -73.65 -129.80 REMARK 500 SER A 171 -126.68 -96.17 REMARK 500 GLN A 184 50.03 -148.11 REMARK 500 ASP A 273 15.18 -143.62 REMARK 500 ASN B 9 106.77 -162.59 REMARK 500 ASN B 66 -71.77 -130.41 REMARK 500 ASN B 133 176.06 67.66 REMARK 500 LEU B 145 -59.29 -122.56 REMARK 500 SER B 171 -127.68 -96.34 REMARK 500 GLN B 184 47.63 -149.86 REMARK 500 PHE B 208 -0.31 -140.41 REMARK 500 THR B 221 -166.02 -126.72 REMARK 500 ASP B 273 16.25 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 5 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 301 DBREF 7DLM A 1 279 UNP B2KJ46 B2KJ46_CANPA 1 279 DBREF 7DLM B 1 279 UNP B2KJ46 B2KJ46_CANPA 1 279 SEQADV 7DLM SER A 0 UNP B2KJ46 EXPRESSION TAG SEQADV 7DLM SER B 0 UNP B2KJ46 EXPRESSION TAG SEQRES 1 A 280 SER MET GLY GLU ILE GLU SER TYR CYS ASN LYS GLU LEU SEQRES 2 A 280 GLY PRO LEU PRO THR LYS ALA PRO THR LEU SER LYS ASN SEQRES 3 A 280 VAL LEU ASP LEU PHE SER LEU LYS GLY LYS VAL ALA SER SEQRES 4 A 280 VAL THR GLY SER SER GLY GLY ILE GLY TRP ALA VAL ALA SEQRES 5 A 280 GLU ALA TYR ALA GLN ALA GLY ALA ASP VAL ALA ILE TRP SEQRES 6 A 280 TYR ASN SER HIS PRO ALA ASP GLU LYS ALA GLU HIS LEU SEQRES 7 A 280 GLN LYS THR TYR GLY VAL HIS SER LYS ALA TYR LYS CYS SEQRES 8 A 280 ASN ILE SER ASP PRO LYS SER VAL GLU GLU THR ILE SER SEQRES 9 A 280 GLN GLN GLU LYS ASP PHE GLY THR ILE ASP VAL PHE VAL SEQRES 10 A 280 ALA ASN ALA GLY VAL THR TRP THR GLN GLY PRO GLU ILE SEQRES 11 A 280 ASP VAL ASP ASN TYR ASP SER TRP ASN LYS ILE ILE SER SEQRES 12 A 280 VAL ASP LEU ASN GLY VAL TYR TYR CYS SER HIS ASN ILE SEQRES 13 A 280 GLY LYS ILE PHE LYS LYS ASN GLY LYS GLY SER LEU ILE SEQRES 14 A 280 ILE THR SER SER ILE SER GLY LYS ILE VAL ASN ILE PRO SEQRES 15 A 280 GLN LEU GLN ALA PRO TYR ASN THR ALA LYS ALA ALA CYS SEQRES 16 A 280 THR HIS LEU ALA LYS SER LEU ALA ILE GLU TRP ALA PRO SEQRES 17 A 280 PHE ALA ARG VAL ASN THR ILE SER PRO GLY TYR ILE ASP SEQRES 18 A 280 THR ASP ILE THR ASP PHE ALA SER LYS ASP MET LYS ALA SEQRES 19 A 280 LYS TRP TRP GLN LEU THR PRO LEU GLY ARG GLU GLY LEU SEQRES 20 A 280 THR GLN GLU LEU VAL GLY GLY TYR LEU TYR LEU ALA SER SEQRES 21 A 280 ASN ALA SER THR PHE THR THR GLY SER ASP VAL VAL ILE SEQRES 22 A 280 ASP GLY GLY TYR THR CYS PRO SEQRES 1 B 280 SER MET GLY GLU ILE GLU SER TYR CYS ASN LYS GLU LEU SEQRES 2 B 280 GLY PRO LEU PRO THR LYS ALA PRO THR LEU SER LYS ASN SEQRES 3 B 280 VAL LEU ASP LEU PHE SER LEU LYS GLY LYS VAL ALA SER SEQRES 4 B 280 VAL THR GLY SER SER GLY GLY ILE GLY TRP ALA VAL ALA SEQRES 5 B 280 GLU ALA TYR ALA GLN ALA GLY ALA ASP VAL ALA ILE TRP SEQRES 6 B 280 TYR ASN SER HIS PRO ALA ASP GLU LYS ALA GLU HIS LEU SEQRES 7 B 280 GLN LYS THR TYR GLY VAL HIS SER LYS ALA TYR LYS CYS SEQRES 8 B 280 ASN ILE SER ASP PRO LYS SER VAL GLU GLU THR ILE SER SEQRES 9 B 280 GLN GLN GLU LYS ASP PHE GLY THR ILE ASP VAL PHE VAL SEQRES 10 B 280 ALA ASN ALA GLY VAL THR TRP THR GLN GLY PRO GLU ILE SEQRES 11 B 280 ASP VAL ASP ASN TYR ASP SER TRP ASN LYS ILE ILE SER SEQRES 12 B 280 VAL ASP LEU ASN GLY VAL TYR TYR CYS SER HIS ASN ILE SEQRES 13 B 280 GLY LYS ILE PHE LYS LYS ASN GLY LYS GLY SER LEU ILE SEQRES 14 B 280 ILE THR SER SER ILE SER GLY LYS ILE VAL ASN ILE PRO SEQRES 15 B 280 GLN LEU GLN ALA PRO TYR ASN THR ALA LYS ALA ALA CYS SEQRES 16 B 280 THR HIS LEU ALA LYS SER LEU ALA ILE GLU TRP ALA PRO SEQRES 17 B 280 PHE ALA ARG VAL ASN THR ILE SER PRO GLY TYR ILE ASP SEQRES 18 B 280 THR ASP ILE THR ASP PHE ALA SER LYS ASP MET LYS ALA SEQRES 19 B 280 LYS TRP TRP GLN LEU THR PRO LEU GLY ARG GLU GLY LEU SEQRES 20 B 280 THR GLN GLU LEU VAL GLY GLY TYR LEU TYR LEU ALA SER SEQRES 21 B 280 ASN ALA SER THR PHE THR THR GLY SER ASP VAL VAL ILE SEQRES 22 B 280 ASP GLY GLY TYR THR CYS PRO HET NDP A 301 48 HET NDP B 301 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 HOH *483(H2 O) HELIX 1 AA1 ASN A 9 GLY A 13 5 5 HELIX 2 AA2 VAL A 26 SER A 31 5 6 HELIX 3 AA3 GLY A 44 ALA A 57 1 14 HELIX 4 AA4 ALA A 70 GLY A 82 1 13 HELIX 5 AA5 ASP A 94 GLY A 110 1 17 HELIX 6 AA6 PRO A 127 VAL A 131 5 5 HELIX 7 AA7 TYR A 134 LEU A 145 1 12 HELIX 8 AA8 LEU A 145 GLY A 163 1 19 HELIX 9 AA9 SER A 172 LYS A 176 5 5 HELIX 10 AB1 GLN A 184 TRP A 205 1 22 HELIX 11 AB2 THR A 221 ASP A 225 5 5 HELIX 12 AB3 SER A 228 THR A 239 1 12 HELIX 13 AB4 LEU A 246 GLU A 249 5 4 HELIX 14 AB5 LEU A 250 SER A 259 1 10 HELIX 15 AB6 ASN A 260 THR A 263 5 4 HELIX 16 AB7 ASN B 9 GLY B 13 5 5 HELIX 17 AB8 ASN B 25 PHE B 30 1 6 HELIX 18 AB9 GLY B 44 ALA B 57 1 14 HELIX 19 AC1 ALA B 70 GLY B 82 1 13 HELIX 20 AC2 ASP B 94 GLY B 110 1 17 HELIX 21 AC3 PRO B 127 VAL B 131 5 5 HELIX 22 AC4 TYR B 134 LEU B 145 1 12 HELIX 23 AC5 LEU B 145 GLY B 163 1 19 HELIX 24 AC6 SER B 172 LYS B 176 5 5 HELIX 25 AC7 GLN B 184 ALA B 206 1 23 HELIX 26 AC8 SER B 228 THR B 239 1 12 HELIX 27 AC9 LEU B 246 GLU B 249 5 4 HELIX 28 AD1 LEU B 250 SER B 259 1 10 HELIX 29 AD2 ASN B 260 THR B 263 5 4 SHEET 1 AA1 7 SER A 85 LYS A 89 0 SHEET 2 AA1 7 ASP A 60 TYR A 65 1 N ILE A 63 O LYS A 86 SHEET 3 AA1 7 VAL A 36 VAL A 39 1 N ALA A 37 O ASP A 60 SHEET 4 AA1 7 VAL A 114 ALA A 117 1 O VAL A 116 N SER A 38 SHEET 5 AA1 7 SER A 166 THR A 170 1 O ILE A 168 N PHE A 115 SHEET 6 AA1 7 ARG A 210 PRO A 216 1 O ARG A 210 N LEU A 167 SHEET 7 AA1 7 ASP A 269 ILE A 272 1 O VAL A 270 N THR A 213 SHEET 1 AA2 7 SER B 85 LYS B 89 0 SHEET 2 AA2 7 ASP B 60 TYR B 65 1 N ILE B 63 O LYS B 86 SHEET 3 AA2 7 VAL B 36 VAL B 39 1 N ALA B 37 O ASP B 60 SHEET 4 AA2 7 VAL B 114 ALA B 117 1 O VAL B 116 N SER B 38 SHEET 5 AA2 7 SER B 166 THR B 170 1 O ILE B 168 N PHE B 115 SHEET 6 AA2 7 ARG B 210 PRO B 216 1 O ARG B 210 N LEU B 167 SHEET 7 AA2 7 ASP B 269 ILE B 272 1 O VAL B 270 N SER B 215 CISPEP 1 LEU A 15 PRO A 16 0 -0.20 CISPEP 2 ILE A 180 PRO A 181 0 0.34 CISPEP 3 LEU B 15 PRO B 16 0 -4.01 CISPEP 4 ILE B 180 PRO B 181 0 -0.04 SITE 1 AC1 37 GLY A 41 SER A 43 GLY A 44 GLY A 45 SITE 2 AC1 37 ILE A 46 TYR A 65 ASN A 66 SER A 67 SITE 3 AC1 37 HIS A 68 CYS A 90 ASN A 91 ILE A 92 SITE 4 AC1 37 ASN A 118 ALA A 119 GLY A 120 VAL A 121 SITE 5 AC1 37 THR A 170 SER A 171 SER A 172 TYR A 187 SITE 6 AC1 37 LYS A 191 PRO A 216 GLY A 217 ILE A 219 SITE 7 AC1 37 THR A 221 ILE A 223 HOH A 414 HOH A 425 SITE 8 AC1 37 HOH A 430 HOH A 432 HOH A 436 HOH A 459 SITE 9 AC1 37 HOH A 486 HOH A 524 HOH A 547 HOH A 552 SITE 10 AC1 37 HOH A 559 SITE 1 AC2 35 GLY B 41 SER B 43 GLY B 44 GLY B 45 SITE 2 AC2 35 ILE B 46 TYR B 65 ASN B 66 SER B 67 SITE 3 AC2 35 HIS B 68 CYS B 90 ASN B 91 ILE B 92 SITE 4 AC2 35 ASN B 118 ALA B 119 GLY B 120 VAL B 121 SITE 5 AC2 35 THR B 170 SER B 171 SER B 172 TYR B 187 SITE 6 AC2 35 LYS B 191 PRO B 216 GLY B 217 ILE B 219 SITE 7 AC2 35 THR B 221 ILE B 223 HOH B 408 HOH B 411 SITE 8 AC2 35 HOH B 415 HOH B 417 HOH B 434 HOH B 469 SITE 9 AC2 35 HOH B 475 HOH B 493 HOH B 552 CRYST1 69.678 114.895 126.129 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007928 0.00000