HEADER HYDROLASE 04-DEC-20 7DML TITLE OXA-48 CARBAPENEMASE IN COMPLEX WITH (R)-2-(1-HYDROXY-1,3- TITLE 2 DIHYDROBENZO[C][1,2]OXABOROL-3-YL)ACRYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLA_2, BLA_3, BLAOXA-48; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBAPENEMASE, SERINE-BETA-LACTAMASE, ANTIBIOTIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.-B.LI,Y.-H.YAN REVDAT 2 29-NOV-23 7DML 1 REMARK REVDAT 1 15-DEC-21 7DML 0 JRNL AUTH Y.C.XIAO,X.P.CHEN,J.DENG,Y.H.YAN,K.R.ZHU,G.LI,J.L.YU,J.BREM, JRNL AUTH 2 F.CHEN,C.J.SCHOFIELD,G.B.LI JRNL TITL DESIGN AND ENANTIOSELECTIVE SYNTHESIS OF 3-(ALPHA-ACRYLIC JRNL TITL 2 ACID) BENZOXABOROLES TO COMBAT CARBAPENEMASE RESISTANCE JRNL REF CHEM.COMMUN.(CAMB.) V. 57 7709 2021 JRNL REFN ESSN 1364-548X JRNL DOI 10.1039/D1CC03026D REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 77641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8090 - 4.6471 0.92 5289 138 0.1402 0.1402 REMARK 3 2 4.6471 - 3.6964 0.95 5443 139 0.1225 0.1362 REMARK 3 3 3.6964 - 3.2314 0.96 5419 149 0.1295 0.1700 REMARK 3 4 3.2314 - 2.9370 0.96 5408 142 0.1465 0.1750 REMARK 3 5 2.9370 - 2.7270 0.97 5476 147 0.1452 0.1685 REMARK 3 6 2.7270 - 2.5666 0.97 5464 146 0.1379 0.1970 REMARK 3 7 2.5666 - 2.4383 0.97 5466 147 0.1350 0.1810 REMARK 3 8 2.4383 - 2.3324 0.98 5502 139 0.1379 0.1763 REMARK 3 9 2.3324 - 2.2427 0.98 5491 145 0.1395 0.2021 REMARK 3 10 2.2427 - 2.1654 0.98 5505 147 0.1394 0.1850 REMARK 3 11 2.1654 - 2.0978 0.98 5550 147 0.1396 0.2140 REMARK 3 12 2.0978 - 2.0379 0.98 5521 148 0.1387 0.1762 REMARK 3 13 2.0379 - 1.9843 0.98 5523 140 0.1440 0.1891 REMARK 3 14 1.9843 - 1.9360 0.82 4585 125 0.1785 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8192 REMARK 3 ANGLE : 1.100 11097 REMARK 3 CHIRALITY : 0.110 1159 REMARK 3 PLANARITY : 0.006 1429 REMARK 3 DIHEDRAL : 21.092 4801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 195 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X CDTE 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.936 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 6P98 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 5% 1-BUTANOL, 11 REMARK 280 -17% (V/V) POLYETHYLENE GLYCOL 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.93250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ILE B 15 REMARK 465 ILE B 16 REMARK 465 GLY B 17 REMARK 465 MET B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLU B 24 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 VAL C 3 REMARK 465 LEU C 4 REMARK 465 ALA C 5 REMARK 465 LEU C 6 REMARK 465 SER C 7 REMARK 465 ALA C 8 REMARK 465 VAL C 9 REMARK 465 PHE C 10 REMARK 465 LEU C 11 REMARK 465 VAL C 12 REMARK 465 ALA C 13 REMARK 465 SER C 14 REMARK 465 ILE C 15 REMARK 465 ILE C 16 REMARK 465 GLY C 17 REMARK 465 MET C 18 REMARK 465 PRO C 19 REMARK 465 ALA C 20 REMARK 465 VAL C 21 REMARK 465 ALA C 22 REMARK 465 LYS C 23 REMARK 465 GLU C 24 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 VAL D 3 REMARK 465 LEU D 4 REMARK 465 ALA D 5 REMARK 465 LEU D 6 REMARK 465 SER D 7 REMARK 465 ALA D 8 REMARK 465 VAL D 9 REMARK 465 PHE D 10 REMARK 465 LEU D 11 REMARK 465 VAL D 12 REMARK 465 ALA D 13 REMARK 465 SER D 14 REMARK 465 ILE D 15 REMARK 465 ILE D 16 REMARK 465 GLY D 17 REMARK 465 MET D 18 REMARK 465 PRO D 19 REMARK 465 ALA D 20 REMARK 465 VAL D 21 REMARK 465 ALA D 22 REMARK 465 LYS D 23 REMARK 465 GLU D 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 70 B02 H9O B 301 1.76 REMARK 500 OG SER C 70 B02 H9O C 301 1.77 REMARK 500 OG SER D 70 B02 H9O D 301 1.80 REMARK 500 OG SER A 70 B02 H9O A 301 1.87 REMARK 500 O HOH C 541 O HOH C 674 1.91 REMARK 500 O HOH D 524 O HOH D 564 1.95 REMARK 500 O HOH C 499 O HOH C 600 2.03 REMARK 500 O HOH B 561 O HOH B 607 2.03 REMARK 500 O HOH A 426 O HOH A 619 2.03 REMARK 500 O HOH A 532 O HOH A 615 2.03 REMARK 500 OD1 ASP D 230 O HOH D 401 2.06 REMARK 500 O HOH B 584 O HOH B 597 2.06 REMARK 500 O HOH B 576 O HOH B 615 2.07 REMARK 500 O HOH A 541 O HOH A 643 2.07 REMARK 500 O HOH D 557 O HOH D 559 2.08 REMARK 500 O HOH C 687 O HOH C 699 2.08 REMARK 500 N TRP D 25 O HOH D 402 2.09 REMARK 500 O HOH C 507 O HOH C 574 2.09 REMARK 500 O HOH A 578 O HOH A 615 2.10 REMARK 500 OE2 GLU A 216 O HOH A 401 2.13 REMARK 500 O HOH A 441 O HOH A 639 2.13 REMARK 500 O HOH D 524 O HOH D 540 2.15 REMARK 500 O HOH C 402 O HOH C 425 2.15 REMARK 500 N TRP B 25 O HOH B 401 2.15 REMARK 500 O HOH D 516 O HOH D 545 2.16 REMARK 500 O HOH B 502 O HOH B 576 2.17 REMARK 500 O HOH A 443 O HOH C 422 2.18 REMARK 500 O HOH B 610 O HOH B 614 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 593 O HOH C 677 2556 1.95 REMARK 500 O HOH A 509 O HOH C 658 2656 2.11 REMARK 500 O HOH A 470 O HOH B 532 1655 2.12 REMARK 500 O HOH A 509 O HOH C 672 2656 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL D 153 CG1 - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 69 -139.33 45.23 REMARK 500 ASN A 106 51.89 -92.73 REMARK 500 GLU A 147 19.85 58.46 REMARK 500 SER A 155 6.61 -150.43 REMARK 500 ASP A 159 22.82 -148.83 REMARK 500 ALA B 69 -135.43 44.56 REMARK 500 ASN B 106 56.41 -92.70 REMARK 500 ASP B 159 18.75 -154.40 REMARK 500 ASN C 58 95.48 -165.13 REMARK 500 ALA C 69 -133.96 46.97 REMARK 500 ASP C 159 21.28 -156.29 REMARK 500 ALA D 69 -137.94 47.74 REMARK 500 ASN D 106 51.51 -92.36 REMARK 500 ASP D 159 19.83 -145.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DML A 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 7DML B 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 7DML C 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 7DML D 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 SEQRES 1 A 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 A 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 A 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 A 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 A 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 A 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 A 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 A 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 A 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 A 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 A 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 A 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 A 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 A 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 A 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 A 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 A 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 A 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 A 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 A 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 A 265 GLU LYS ILE ILE PRO SEQRES 1 B 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 B 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 B 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 B 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 B 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 B 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 B 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 B 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 B 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 B 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 B 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 B 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 B 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 B 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 B 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 B 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 B 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 B 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 B 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 B 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 B 265 GLU LYS ILE ILE PRO SEQRES 1 C 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 C 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 C 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 C 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 C 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 C 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 C 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 C 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 C 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 C 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 C 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 C 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 C 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 C 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 C 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 C 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 C 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 C 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 C 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 C 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 C 265 GLU LYS ILE ILE PRO SEQRES 1 D 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 D 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 D 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 D 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 D 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 D 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 D 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 D 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 D 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 D 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 D 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 D 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 D 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 D 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 D 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 D 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 D 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 D 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 D 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 D 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 D 265 GLU LYS ILE ILE PRO MODRES 7DML KCX A 73 LYS MODIFIED RESIDUE MODRES 7DML KCX B 73 LYS MODIFIED RESIDUE MODRES 7DML KCX C 73 LYS MODIFIED RESIDUE MODRES 7DML KCX D 73 LYS MODIFIED RESIDUE HET KCX A 73 12 HET KCX B 73 12 HET KCX C 73 12 HET KCX D 73 12 HET H9O A 301 15 HET H9O B 301 15 HET H9O C 301 15 HET H9O D 301 15 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM H9O 2-[(3R)-1-OXIDANYL-3H-2,1-BENZOXABOROL-3-YL]PROP-2- HETNAM 2 H9O ENOIC ACID FORMUL 1 KCX 4(C7 H14 N2 O4) FORMUL 5 H9O 4(C10 H9 B O4) FORMUL 9 HOH *980(H2 O) HELIX 1 AA1 TRP A 31 HIS A 38 1 8 HELIX 2 AA2 ASN A 58 ASN A 63 1 6 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 PHE A 142 1 12 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 ALA A 166 HIS A 178 1 13 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 GLU B 37 1 7 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASN B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 PHE B 142 1 12 HELIX 22 AC4 SER B 155 GLY B 160 1 6 HELIX 23 AC5 ALA B 166 HIS B 178 1 13 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 HELIX 27 AC9 TRP C 31 HIS C 38 1 8 HELIX 28 AD1 ASN C 58 ASN C 63 1 6 HELIX 29 AD2 PRO C 68 THR C 71 5 4 HELIX 30 AD3 PHE C 72 LEU C 83 1 12 HELIX 31 AD4 ILE C 102 ASN C 106 5 5 HELIX 32 AD5 ASN C 110 TYR C 117 1 8 HELIX 33 AD6 VAL C 119 GLY C 131 1 13 HELIX 34 AD7 GLY C 131 ASP C 143 1 13 HELIX 35 AD8 SER C 155 GLY C 160 1 6 HELIX 36 AD9 ALA C 166 HIS C 178 1 13 HELIX 37 AE1 SER C 184 MET C 195 1 12 HELIX 38 AE2 THR C 243 LEU C 247 5 5 HELIX 39 AE3 GLY C 248 GLU C 261 1 14 HELIX 40 AE4 TRP D 31 HIS D 38 1 8 HELIX 41 AE5 ASN D 58 ASN D 63 1 6 HELIX 42 AE6 PRO D 68 THR D 71 5 4 HELIX 43 AE7 PHE D 72 LEU D 83 1 12 HELIX 44 AE8 ILE D 102 ASN D 106 5 5 HELIX 45 AE9 ASN D 110 TYR D 117 1 8 HELIX 46 AF1 VAL D 119 GLY D 131 1 13 HELIX 47 AF2 GLY D 131 PHE D 142 1 12 HELIX 48 AF3 SER D 155 GLY D 160 1 6 HELIX 49 AF4 ALA D 166 HIS D 178 1 13 HELIX 50 AF5 SER D 184 MET D 195 1 12 HELIX 51 AF6 THR D 243 LEU D 247 5 5 HELIX 52 AF7 GLY D 248 GLU D 261 1 14 SHEET 1 AA1 7 GLN A 26 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N LEU A 46 O PHE A 55 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N GLY A 224 O PHE A 235 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N ILE A 204 O GLU A 227 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 2 ALA A 65 PHE A 66 0 SHEET 2 AA2 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 SHEET 1 AA3 7 GLN B 26 GLU B 27 0 SHEET 2 AA3 7 GLN B 53 THR B 56 1 O GLY B 54 N GLN B 26 SHEET 3 AA3 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 4 AA3 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA3 7 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 6 AA3 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA3 7 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 AA4 2 ALA B 65 PHE B 66 0 SHEET 2 AA4 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 SHEET 1 AA5 7 GLN C 26 GLU C 27 0 SHEET 2 AA5 7 GLN C 53 THR C 56 1 O THR C 56 N GLN C 26 SHEET 3 AA5 7 GLY C 42 ASN C 48 -1 N LEU C 46 O PHE C 55 SHEET 4 AA5 7 VAL C 232 ASP C 240 -1 O ASN C 238 N VAL C 43 SHEET 5 AA5 7 ILE C 219 GLU C 227 -1 N VAL C 226 O TRP C 233 SHEET 6 AA5 7 ILE C 204 SER C 212 -1 N ILE C 204 O GLU C 227 SHEET 7 AA5 7 LEU C 196 ALA C 199 -1 N GLU C 198 O ILE C 205 SHEET 1 AA6 2 ALA C 65 PHE C 66 0 SHEET 2 AA6 2 ILE C 164 SER C 165 -1 O ILE C 164 N PHE C 66 SHEET 1 AA7 7 GLN D 26 GLU D 27 0 SHEET 2 AA7 7 GLN D 53 THR D 56 1 O GLY D 54 N GLN D 26 SHEET 3 AA7 7 GLY D 42 ASN D 48 -1 N LEU D 46 O PHE D 55 SHEET 4 AA7 7 VAL D 232 ASP D 240 -1 O ASN D 238 N VAL D 43 SHEET 5 AA7 7 ILE D 219 GLU D 227 -1 N GLY D 224 O PHE D 235 SHEET 6 AA7 7 ILE D 204 SER D 212 -1 N SER D 212 O ILE D 219 SHEET 7 AA7 7 LEU D 196 ALA D 199 -1 N GLU D 198 O ILE D 205 SHEET 1 AA8 2 ALA D 65 PHE D 66 0 SHEET 2 AA8 2 ILE D 164 SER D 165 -1 O ILE D 164 N PHE D 66 LINK C PHE A 72 N KCX A 73 1555 1555 1.34 LINK C KCX A 73 N ILE A 74 1555 1555 1.35 LINK C PHE B 72 N KCX B 73 1555 1555 1.34 LINK C KCX B 73 N ILE B 74 1555 1555 1.35 LINK C PHE C 72 N KCX C 73 1555 1555 1.34 LINK C KCX C 73 N ILE C 74 1555 1555 1.35 LINK C PHE D 72 N KCX D 73 1555 1555 1.34 LINK C KCX D 73 N ILE D 74 1555 1555 1.35 CISPEP 1 GLU A 216 PRO A 217 0 -4.83 CISPEP 2 GLU B 216 PRO B 217 0 -9.92 CISPEP 3 GLU C 216 PRO C 217 0 -4.56 CISPEP 4 GLU D 216 PRO D 217 0 -1.85 CRYST1 58.455 105.865 94.118 90.00 107.81 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017107 0.000000 0.005494 0.00000 SCALE2 0.000000 0.009446 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011160 0.00000