HEADER CYTOKINE 17-DEC-20 7DOV TITLE THE CRYSTAL STRUCTURE OF ZEBRAFISH TUMOR NECROSIS FACTOR ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYMPHOTOXIN-ALPHA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TUMOR NECROSIS FACTOR ALPHA, TNF-ALPHA,TNF-BETA,TUMOR COMPND 5 NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: TNFA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TNF ALPHA, DANIO RERIO, ZEBRAFISH, CYTOKINE EXPDTA X-RAY DIFFRACTION AUTHOR Y.DUAN,C.XIA REVDAT 2 29-NOV-23 7DOV 1 REMARK REVDAT 1 22-DEC-21 7DOV 0 JRNL AUTH Y.DUAN,C.XIA JRNL TITL THE STRUCTURE OF ZEBRAFISH TUMOUR NECROSIS FACTOR ALPHA AT JRNL TITL 2 2.6 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 14769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2700 - 4.4200 1.00 3159 143 0.1974 0.2478 REMARK 3 2 4.4200 - 3.5100 1.00 3013 140 0.1921 0.3121 REMARK 3 3 3.5100 - 3.0700 1.00 2973 157 0.2325 0.3129 REMARK 3 4 3.0700 - 2.7900 0.95 2816 138 0.2712 0.3318 REMARK 3 5 2.7900 - 2.5900 0.72 2126 104 0.2865 0.3794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.357 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.753 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 3573 REMARK 3 ANGLE : 2.633 4842 REMARK 3 CHIRALITY : 0.178 532 REMARK 3 PLANARITY : 0.016 630 REMARK 3 DIHEDRAL : 22.367 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1300019861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 51.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.10 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TSV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M DL-MALIC ACID PH 7.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.16400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.51050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.16400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.51050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 GLN B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 PHE B 4 REMARK 465 THR B 5 REMARK 465 SER B 6 REMARK 465 LYS B 7 REMARK 465 GLN C 1 REMARK 465 GLY C 2 REMARK 465 ASN C 3 REMARK 465 PHE C 4 REMARK 465 THR C 5 REMARK 465 SER C 6 REMARK 465 LYS C 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 109 OE1 GLN B 73 1.22 REMARK 500 CB CYS C 65 OE2 GLU C 108 1.44 REMARK 500 N THR C 66 OE2 GLU C 108 1.77 REMARK 500 NH2 ARG C 98 O HOH C 201 1.82 REMARK 500 OG SER B 84 OG SER B 86 1.98 REMARK 500 CG ASN A 109 OE1 GLN B 73 2.00 REMARK 500 CA CYS C 65 OE2 GLU C 108 2.05 REMARK 500 OD2 ASP A 144 NZ LYS A 147 2.07 REMARK 500 C CYS C 65 OE2 GLU C 108 2.13 REMARK 500 OG1 THR B 13 O HOH B 201 2.15 REMARK 500 NE2 HIS C 62 OE2 GLU C 142 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 88 NH1 ARG C 124 3556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 17 C ASN A 17 O -0.135 REMARK 500 PRO A 48 N PRO A 48 CA 0.208 REMARK 500 PRO A 92 N PRO A 92 CA 0.208 REMARK 500 PRO A 105 N PRO A 105 CA 0.238 REMARK 500 GLU A 106 C SER A 107 N 0.200 REMARK 500 PRO A 139 N PRO A 139 CA 0.213 REMARK 500 PRO B 48 N PRO B 48 CA 0.205 REMARK 500 PRO B 92 N PRO B 92 CA 0.214 REMARK 500 PRO B 105 N PRO B 105 CA 0.227 REMARK 500 THR B 114 C THR B 114 O -0.123 REMARK 500 GLU B 125 CD GLU B 125 OE1 -0.067 REMARK 500 PRO B 139 N PRO B 139 CA 0.220 REMARK 500 PRO C 48 N PRO C 48 CA 0.208 REMARK 500 PRO C 92 N PRO C 92 CA 0.215 REMARK 500 PRO C 105 N PRO C 105 CA 0.227 REMARK 500 PRO C 139 N PRO C 139 CA 0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 48 C - N - CA ANGL. DEV. = 18.4 DEGREES REMARK 500 PRO A 48 CA - N - CD ANGL. DEV. = -9.1 DEGREES REMARK 500 PRO A 92 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 PRO A 92 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 PRO A 105 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 PRO A 105 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 GLU A 108 CA - C - N ANGL. DEV. = 22.1 DEGREES REMARK 500 GLU A 108 O - C - N ANGL. DEV. = -20.1 DEGREES REMARK 500 ASN A 109 C - N - CA ANGL. DEV. = 32.5 DEGREES REMARK 500 ASN A 109 CB - CA - C ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO A 139 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 139 CA - N - CD ANGL. DEV. = -9.9 DEGREES REMARK 500 PRO B 48 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO B 48 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 PRO B 92 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO B 92 CA - N - CD ANGL. DEV. = -9.8 DEGREES REMARK 500 PRO B 105 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 PRO B 105 CA - N - CD ANGL. DEV. = -10.9 DEGREES REMARK 500 PRO B 139 C - N - CA ANGL. DEV. = 18.4 DEGREES REMARK 500 PRO B 139 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 PRO C 48 C - N - CA ANGL. DEV. = 18.5 DEGREES REMARK 500 PRO C 48 CA - N - CD ANGL. DEV. = -9.0 DEGREES REMARK 500 PHE C 83 CB - CA - C ANGL. DEV. = 14.9 DEGREES REMARK 500 PRO C 92 C - N - CA ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO C 92 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO C 105 C - N - CA ANGL. DEV. = 21.8 DEGREES REMARK 500 PRO C 105 CA - N - CD ANGL. DEV. = -11.5 DEGREES REMARK 500 GLU C 108 O - C - N ANGL. DEV. = -28.2 DEGREES REMARK 500 ASN C 109 CB - CA - C ANGL. DEV. = -20.5 DEGREES REMARK 500 PRO C 139 C - N - CA ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO C 139 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -130.25 50.88 REMARK 500 GLN A 31 30.89 -94.29 REMARK 500 ASN A 42 -122.89 80.02 REMARK 500 CYS A 65 -76.93 96.48 REMARK 500 THR A 66 -161.04 69.78 REMARK 500 LEU A 69 36.90 -86.15 REMARK 500 TYR A 87 -166.40 -124.25 REMARK 500 CYS A 101 73.72 49.92 REMARK 500 GLU A 108 -117.56 -96.15 REMARK 500 ASN A 109 153.77 23.15 REMARK 500 ASN A 145 -142.00 56.99 REMARK 500 ASP B 30 -127.19 50.15 REMARK 500 CYS B 65 -55.10 84.86 REMARK 500 THR B 66 -151.43 56.67 REMARK 500 SER B 67 -40.63 -134.76 REMARK 500 THR B 70 -150.33 -97.65 REMARK 500 GLU B 71 -79.05 56.73 REMARK 500 GLU B 72 103.06 -53.95 REMARK 500 GLN B 73 106.83 -56.63 REMARK 500 CYS B 101 70.67 54.02 REMARK 500 PRO B 105 -79.32 -46.41 REMARK 500 ASN B 109 143.55 109.63 REMARK 500 ASN B 143 43.37 -94.03 REMARK 500 ASP C 30 -121.51 51.40 REMARK 500 ASN C 42 61.99 65.91 REMARK 500 CYS C 65 -136.14 60.25 REMARK 500 THR C 66 142.81 83.26 REMARK 500 PRO C 92 95.73 -65.52 REMARK 500 PRO C 105 -74.56 -56.82 REMARK 500 PRO C 139 -9.83 -56.34 REMARK 500 ASN C 143 -54.89 -129.06 REMARK 500 ASP C 144 -78.47 24.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 108 ASN A 109 -107.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 109 -11.65 REMARK 500 ARG C 82 -15.88 REMARK 500 GLN C 103 -16.88 REMARK 500 GLU C 108 39.04 REMARK 500 PHE C 121 -10.10 REMARK 500 PHE C 121 -10.10 REMARK 500 HIS C 122 20.15 REMARK 500 HIS C 122 20.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DOV A 1 155 UNP Q6T9C7 Q6T9C7_DANRE 80 234 DBREF 7DOV B 1 155 UNP Q6T9C7 Q6T9C7_DANRE 80 234 DBREF 7DOV C 1 155 UNP Q6T9C7 Q6T9C7_DANRE 80 234 SEQRES 1 A 155 GLN GLY ASN PHE THR SER LYS ALA ALA ILE HIS LEU THR SEQRES 2 A 155 GLY GLY TYR ASN SER GLU SER LYS THR LEU ASP TRP ARG SEQRES 3 A 155 ASP ASP GLN ASP GLN ALA PHE SER SER GLY GLY LEU LYS SEQRES 4 A 155 LEU VAL ASN ARG GLU ILE ILE ILE PRO ASP ASP GLY ILE SEQRES 5 A 155 TYR PHE VAL TYR SER GLN VAL SER LEU HIS ILE SER CYS SEQRES 6 A 155 THR SER GLU LEU THR GLU GLU GLN VAL LEU MET SER HIS SEQRES 7 A 155 ALA VAL MET ARG PHE SER GLU SER TYR GLY GLY LYS LYS SEQRES 8 A 155 PRO LEU PHE SER ALA ILE ARG SER ILE CYS THR GLN GLU SEQRES 9 A 155 PRO GLU SER GLU ASN LEU TRP TYR ASN THR ILE TYR LEU SEQRES 10 A 155 GLY ALA ALA PHE HIS LEU ARG GLU GLY ASP ARG LEU GLY SEQRES 11 A 155 THR ASP THR THR THR ALA LEU LEU PRO MET VAL GLU ASN SEQRES 12 A 155 ASP ASN GLY LYS THR PHE PHE GLY VAL PHE GLY LEU SEQRES 1 B 155 GLN GLY ASN PHE THR SER LYS ALA ALA ILE HIS LEU THR SEQRES 2 B 155 GLY GLY TYR ASN SER GLU SER LYS THR LEU ASP TRP ARG SEQRES 3 B 155 ASP ASP GLN ASP GLN ALA PHE SER SER GLY GLY LEU LYS SEQRES 4 B 155 LEU VAL ASN ARG GLU ILE ILE ILE PRO ASP ASP GLY ILE SEQRES 5 B 155 TYR PHE VAL TYR SER GLN VAL SER LEU HIS ILE SER CYS SEQRES 6 B 155 THR SER GLU LEU THR GLU GLU GLN VAL LEU MET SER HIS SEQRES 7 B 155 ALA VAL MET ARG PHE SER GLU SER TYR GLY GLY LYS LYS SEQRES 8 B 155 PRO LEU PHE SER ALA ILE ARG SER ILE CYS THR GLN GLU SEQRES 9 B 155 PRO GLU SER GLU ASN LEU TRP TYR ASN THR ILE TYR LEU SEQRES 10 B 155 GLY ALA ALA PHE HIS LEU ARG GLU GLY ASP ARG LEU GLY SEQRES 11 B 155 THR ASP THR THR THR ALA LEU LEU PRO MET VAL GLU ASN SEQRES 12 B 155 ASP ASN GLY LYS THR PHE PHE GLY VAL PHE GLY LEU SEQRES 1 C 155 GLN GLY ASN PHE THR SER LYS ALA ALA ILE HIS LEU THR SEQRES 2 C 155 GLY GLY TYR ASN SER GLU SER LYS THR LEU ASP TRP ARG SEQRES 3 C 155 ASP ASP GLN ASP GLN ALA PHE SER SER GLY GLY LEU LYS SEQRES 4 C 155 LEU VAL ASN ARG GLU ILE ILE ILE PRO ASP ASP GLY ILE SEQRES 5 C 155 TYR PHE VAL TYR SER GLN VAL SER LEU HIS ILE SER CYS SEQRES 6 C 155 THR SER GLU LEU THR GLU GLU GLN VAL LEU MET SER HIS SEQRES 7 C 155 ALA VAL MET ARG PHE SER GLU SER TYR GLY GLY LYS LYS SEQRES 8 C 155 PRO LEU PHE SER ALA ILE ARG SER ILE CYS THR GLN GLU SEQRES 9 C 155 PRO GLU SER GLU ASN LEU TRP TYR ASN THR ILE TYR LEU SEQRES 10 C 155 GLY ALA ALA PHE HIS LEU ARG GLU GLY ASP ARG LEU GLY SEQRES 11 C 155 THR ASP THR THR THR ALA LEU LEU PRO MET VAL GLU ASN SEQRES 12 C 155 ASP ASN GLY LYS THR PHE PHE GLY VAL PHE GLY LEU FORMUL 4 HOH *69(H2 O) HELIX 1 AA1 SER A 67 GLU A 72 1 6 HELIX 2 AA2 LEU A 137 VAL A 141 5 5 HELIX 3 AA3 THR B 135 VAL B 141 5 7 HELIX 4 AA4 THR C 66 GLU C 72 1 7 HELIX 5 AA5 THR C 135 VAL C 141 5 7 SHEET 1 AA1 3 LEU A 23 ARG A 26 0 SHEET 2 AA1 3 ALA A 9 TYR A 16 -1 N GLY A 15 O ASP A 24 SHEET 3 AA1 3 PHE A 33 SER A 35 -1 O PHE A 33 N HIS A 11 SHEET 1 AA2 5 LEU A 23 ARG A 26 0 SHEET 2 AA2 5 ALA A 9 TYR A 16 -1 N GLY A 15 O ASP A 24 SHEET 3 AA2 5 PHE A 149 GLY A 154 -1 O PHE A 150 N LEU A 12 SHEET 4 AA2 5 GLY A 51 ILE A 63 -1 N PHE A 54 O PHE A 153 SHEET 5 AA2 5 TRP A 111 LEU A 123 -1 O TRP A 111 N ILE A 63 SHEET 1 AA3 5 LYS A 39 LEU A 40 0 SHEET 2 AA3 5 ILE A 45 ILE A 46 -1 O ILE A 46 N LYS A 39 SHEET 3 AA3 5 ARG A 128 THR A 133 -1 O LEU A 129 N ILE A 45 SHEET 4 AA3 5 LEU A 75 PHE A 83 -1 N MET A 81 O GLY A 130 SHEET 5 AA3 5 LYS A 90 SER A 99 -1 O ARG A 98 N MET A 76 SHEET 1 AA4 3 THR B 22 ARG B 26 0 SHEET 2 AA4 3 ALA B 9 ASN B 17 -1 N GLY B 15 O ASP B 24 SHEET 3 AA4 3 PHE B 33 SER B 35 -1 O PHE B 33 N HIS B 11 SHEET 1 AA5 5 THR B 22 ARG B 26 0 SHEET 2 AA5 5 ALA B 9 ASN B 17 -1 N GLY B 15 O ASP B 24 SHEET 3 AA5 5 PHE B 149 GLY B 154 -1 O PHE B 150 N LEU B 12 SHEET 4 AA5 5 GLY B 51 ILE B 63 -1 N PHE B 54 O PHE B 153 SHEET 5 AA5 5 TRP B 111 LEU B 123 -1 O TRP B 111 N ILE B 63 SHEET 1 AA6 5 LYS B 39 VAL B 41 0 SHEET 2 AA6 5 GLU B 44 ILE B 46 -1 O ILE B 46 N LYS B 39 SHEET 3 AA6 5 ARG B 128 THR B 133 -1 O LEU B 129 N ILE B 45 SHEET 4 AA6 5 LEU B 75 PHE B 83 -1 N PHE B 83 O ARG B 128 SHEET 5 AA6 5 LYS B 90 SER B 99 -1 O LEU B 93 N VAL B 80 SHEET 1 AA7 3 LEU C 23 ARG C 26 0 SHEET 2 AA7 3 ALA C 9 TYR C 16 -1 N GLY C 15 O ASP C 24 SHEET 3 AA7 3 PHE C 33 SER C 35 -1 O PHE C 33 N HIS C 11 SHEET 1 AA8 5 LEU C 23 ARG C 26 0 SHEET 2 AA8 5 ALA C 9 TYR C 16 -1 N GLY C 15 O ASP C 24 SHEET 3 AA8 5 PHE C 149 GLY C 154 -1 O PHE C 150 N LEU C 12 SHEET 4 AA8 5 GLY C 51 ILE C 63 -1 N PHE C 54 O PHE C 153 SHEET 5 AA8 5 TRP C 111 LEU C 123 -1 O TRP C 111 N ILE C 63 SHEET 1 AA9 5 LYS C 39 LEU C 40 0 SHEET 2 AA9 5 ILE C 45 ILE C 46 -1 O ILE C 46 N LYS C 39 SHEET 3 AA9 5 ARG C 128 THR C 133 -1 O LEU C 129 N ILE C 45 SHEET 4 AA9 5 LEU C 75 PHE C 83 -1 N MET C 81 O GLY C 130 SHEET 5 AA9 5 LYS C 91 SER C 99 -1 O ARG C 98 N MET C 76 SSBOND 1 CYS A 65 CYS A 101 1555 1555 2.00 SSBOND 2 CYS B 65 CYS B 101 1555 1555 2.04 SSBOND 3 CYS C 65 CYS C 101 1555 1555 2.03 CRYST1 84.328 91.021 63.396 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015774 0.00000