HEADER TOXIN 08-JAN-21 7DU5 TITLE THE STRUCTURE OF THE M.TB MAZF-MT1 TOXIN IN COMPLEX WITH A FRAGMENT OF TITLE 2 COGNATE ANTITOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDORIBONUCLEASE MAZF9; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TOXIN MAZF9,MRNA INTERFERASE MAZF-MT1; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: A FRAGMENT OF MAZE-MT1; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MAZF9, MAZF-MT1, RV2801C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 11 ORGANISM_TAXID: 83332 KEYWDS MYCOBACTERIUM TUBERCULOSIS, MAZF, COCRYSTAL STRUCTURE, ANTIBACTERIAL KEYWDS 2 PEPTIDE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR W.XIE,R.CHEN REVDAT 3 29-NOV-23 7DU5 1 REMARK REVDAT 2 26-JUL-23 7DU5 1 JRNL REVDAT 1 12-JAN-22 7DU5 0 JRNL AUTH R.CHEN,J.ZHOU,W.XIE JRNL TITL MECHANISTIC INSIGHT INTO THE PEPTIDE BINDING MODES TO TWO M. JRNL TITL 2 TB MAZF TOXINS. JRNL REF TOXINS V. 13 2021 JRNL REFN ESSN 2072-6651 JRNL PMID 33925254 JRNL DOI 10.3390/TOXINS13050319 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6400 - 3.8200 1.00 2981 133 0.2275 0.2625 REMARK 3 2 3.8200 - 3.0300 1.00 2776 152 0.2956 0.3077 REMARK 3 3 3.0300 - 2.6500 0.99 2731 136 0.3168 0.3053 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.372 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.729 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1899 REMARK 3 ANGLE : 1.096 2594 REMARK 3 CHIRALITY : 0.058 313 REMARK 3 PLANARITY : 0.008 341 REMARK 3 DIHEDRAL : 8.279 1155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4363 96.1379 0.9122 REMARK 3 T TENSOR REMARK 3 T11: 0.4976 T22: 1.2624 REMARK 3 T33: 0.6273 T12: 0.0029 REMARK 3 T13: -0.0846 T23: -0.1077 REMARK 3 L TENSOR REMARK 3 L11: 3.4190 L22: 5.2009 REMARK 3 L33: 2.0410 L12: 1.7201 REMARK 3 L13: -3.3630 L23: -1.8388 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: 1.3883 S13: -0.5952 REMARK 3 S21: -1.2262 S22: -0.1334 S23: -0.2061 REMARK 3 S31: 0.2071 S32: -0.5686 S33: 0.2172 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2117 101.1862 0.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.5390 T22: 1.4973 REMARK 3 T33: 0.6057 T12: -0.1630 REMARK 3 T13: -0.0373 T23: 0.2612 REMARK 3 L TENSOR REMARK 3 L11: 4.7973 L22: 4.2858 REMARK 3 L33: 6.1721 L12: -1.3250 REMARK 3 L13: -2.5098 L23: -0.9108 REMARK 3 S TENSOR REMARK 3 S11: -0.2553 S12: 2.7010 S13: 0.2138 REMARK 3 S21: -0.8091 S22: 0.4463 S23: -0.1264 REMARK 3 S31: -0.1324 S32: 0.0951 S33: 0.1839 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5719 105.0697 6.7189 REMARK 3 T TENSOR REMARK 3 T11: 0.5134 T22: 1.1413 REMARK 3 T33: 0.6320 T12: -0.1786 REMARK 3 T13: 0.0489 T23: 0.0889 REMARK 3 L TENSOR REMARK 3 L11: 5.6016 L22: 3.2063 REMARK 3 L33: 3.5066 L12: -1.8322 REMARK 3 L13: -2.3547 L23: 0.4232 REMARK 3 S TENSOR REMARK 3 S11: 0.1880 S12: 0.0563 S13: 0.4434 REMARK 3 S21: -0.0748 S22: -0.2968 S23: -0.5084 REMARK 3 S31: -0.0405 S32: 0.7878 S33: 0.1023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9821 99.7568 12.1888 REMARK 3 T TENSOR REMARK 3 T11: 0.3668 T22: 1.0886 REMARK 3 T33: 0.6411 T12: -0.1192 REMARK 3 T13: -0.0914 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 5.0571 L22: 3.7649 REMARK 3 L33: 4.3497 L12: 0.5146 REMARK 3 L13: -1.4539 L23: 1.3916 REMARK 3 S TENSOR REMARK 3 S11: -0.3088 S12: -0.5916 S13: -0.1213 REMARK 3 S21: 0.4261 S22: -0.2202 S23: -0.4024 REMARK 3 S31: 1.1128 S32: 0.3778 S33: 0.3176 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3728 112.1168 1.7364 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.9592 REMARK 3 T33: 0.7377 T12: 0.0154 REMARK 3 T13: -0.0724 T23: 0.1812 REMARK 3 L TENSOR REMARK 3 L11: 6.7143 L22: 4.8345 REMARK 3 L33: 4.7421 L12: -1.1026 REMARK 3 L13: -0.6496 L23: 0.9757 REMARK 3 S TENSOR REMARK 3 S11: 0.0920 S12: 1.6216 S13: 1.1288 REMARK 3 S21: -0.4499 S22: 0.2728 S23: -0.1234 REMARK 3 S31: -0.3139 S32: 0.0480 S33: -0.2486 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4041 115.6508 10.1959 REMARK 3 T TENSOR REMARK 3 T11: 0.5232 T22: 0.9492 REMARK 3 T33: 0.7007 T12: -0.1049 REMARK 3 T13: -0.0560 T23: 0.1035 REMARK 3 L TENSOR REMARK 3 L11: 4.2136 L22: 3.5166 REMARK 3 L33: 3.0857 L12: 1.1921 REMARK 3 L13: 1.5439 L23: 1.4309 REMARK 3 S TENSOR REMARK 3 S11: -0.6267 S12: 0.0129 S13: 0.4327 REMARK 3 S21: -0.3996 S22: 0.2687 S23: 0.4706 REMARK 3 S31: -0.6117 S32: 0.0551 S33: 0.0066 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6210 98.4688 2.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.6872 T22: 1.3735 REMARK 3 T33: 0.8520 T12: -0.2333 REMARK 3 T13: -0.1376 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 5.5097 L22: 1.5672 REMARK 3 L33: 6.8260 L12: -0.2883 REMARK 3 L13: 0.1812 L23: 2.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.9956 S12: 1.5439 S13: 0.0611 REMARK 3 S21: -0.7170 S22: 0.2753 S23: 1.1677 REMARK 3 S31: -0.0509 S32: -1.5070 S33: 0.8621 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3264 105.9317 6.3728 REMARK 3 T TENSOR REMARK 3 T11: 0.3514 T22: 1.1928 REMARK 3 T33: 0.9536 T12: 0.0509 REMARK 3 T13: -0.1216 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 2.4723 L22: 2.3025 REMARK 3 L33: 4.1975 L12: -1.0269 REMARK 3 L13: 3.2305 L23: -2.0248 REMARK 3 S TENSOR REMARK 3 S11: -0.2434 S12: 1.0211 S13: 1.3946 REMARK 3 S21: 0.3882 S22: 0.3509 S23: 0.2597 REMARK 3 S31: 0.1408 S32: -1.8517 S33: 0.0470 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4589 115.4163 5.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.6936 T22: 1.0104 REMARK 3 T33: 0.9234 T12: -0.0093 REMARK 3 T13: -0.1857 T23: 0.2166 REMARK 3 L TENSOR REMARK 3 L11: 4.9575 L22: 5.8064 REMARK 3 L33: 3.0781 L12: -0.7862 REMARK 3 L13: -2.0842 L23: -1.3136 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: 0.9216 S13: 1.5909 REMARK 3 S21: -0.2480 S22: 0.0422 S23: 0.0895 REMARK 3 S31: -0.5970 S32: -0.1942 S33: 0.0358 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1145 99.4080 15.1269 REMARK 3 T TENSOR REMARK 3 T11: 0.4276 T22: 0.8038 REMARK 3 T33: 0.7393 T12: -0.1752 REMARK 3 T13: 0.0026 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.1666 L22: 2.2310 REMARK 3 L33: 5.9120 L12: -5.6072 REMARK 3 L13: -5.2610 L23: 5.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.4802 S12: -0.0471 S13: -1.8206 REMARK 3 S21: 0.8712 S22: -0.3517 S23: 1.3293 REMARK 3 S31: 0.6668 S32: -0.3176 S33: 0.6663 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 42 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4580 117.4401 12.1609 REMARK 3 T TENSOR REMARK 3 T11: 0.8608 T22: 1.1805 REMARK 3 T33: 1.0263 T12: -0.5266 REMARK 3 T13: 0.1576 T23: 0.1634 REMARK 3 L TENSOR REMARK 3 L11: 4.4805 L22: 2.5373 REMARK 3 L33: 1.8584 L12: 0.1914 REMARK 3 L13: -0.8538 L23: -1.7556 REMARK 3 S TENSOR REMARK 3 S11: 0.7809 S12: -0.2028 S13: 1.4545 REMARK 3 S21: 0.5168 S22: 0.2440 S23: -0.8556 REMARK 3 S31: -1.7488 S32: -0.1136 S33: -1.1745 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 2 THROUGH 68 OR REMARK 3 (RESID 69 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 70 REMARK 3 THROUGH 73 OR (RESID 74 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 75 THROUGH 92 OR (RESID 93 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 94 THROUGH 96 OR REMARK 3 (RESID 97 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 98 REMARK 3 THROUGH 117)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 2 OR (RESID 3 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 4 THROUGH 38 OR REMARK 3 (RESID 39 THROUGH 41 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 42 THROUGH 56 OR (RESID 57 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 58 THROUGH 67 OR REMARK 3 (RESID 68 THROUGH 69 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 70 THROUGH 117)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DU5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 41.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 20.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M NAOAC PH 5.0, 0.1 REMARK 280 M NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.17667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.08833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.63250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.54417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.72083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.17667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.08833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.54417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 70.63250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 117.72083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 VAL A 1 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLU B -1 REMARK 465 SER B 118 REMARK 465 ALA C 57 REMARK 465 GLY C 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 THR A 39 OG1 CG2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 THR A 68 OG1 CG2 REMARK 470 LEU B 0 CG CD1 CD2 REMARK 470 VAL B 1 CG1 CG2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 THR B 69 OG1 CG2 REMARK 470 VAL B 74 CG1 CG2 REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 97 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 57 NZ LYS B 77 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 89 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 22 -168.91 60.14 REMARK 500 ASN B 22 -171.19 62.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DU5 A 2 118 UNP P71650 MAZF9_MYCTU 2 118 DBREF 7DU5 B 2 118 UNP P71650 MAZF9_MYCTU 2 118 DBREF 7DU5 C 42 58 PDB 7DU5 7DU5 42 58 SEQADV 7DU5 GLY A -3 UNP P71650 EXPRESSION TAG SEQADV 7DU5 PRO A -2 UNP P71650 EXPRESSION TAG SEQADV 7DU5 GLU A -1 UNP P71650 EXPRESSION TAG SEQADV 7DU5 LEU A 0 UNP P71650 EXPRESSION TAG SEQADV 7DU5 VAL A 1 UNP P71650 EXPRESSION TAG SEQADV 7DU5 GLY B -3 UNP P71650 EXPRESSION TAG SEQADV 7DU5 PRO B -2 UNP P71650 EXPRESSION TAG SEQADV 7DU5 GLU B -1 UNP P71650 EXPRESSION TAG SEQADV 7DU5 LEU B 0 UNP P71650 EXPRESSION TAG SEQADV 7DU5 VAL B 1 UNP P71650 EXPRESSION TAG SEQRES 1 A 122 GLY PRO GLU LEU VAL MET ARG ARG GLY GLU ILE TRP GLN SEQRES 2 A 122 VAL ASP LEU ASP PRO ALA ARG GLY SER GLU ALA ASN ASN SEQRES 3 A 122 GLN ARG PRO ALA VAL VAL VAL SER ASN ASP ARG ALA ASN SEQRES 4 A 122 ALA THR ALA THR ARG LEU GLY ARG GLY VAL ILE THR VAL SEQRES 5 A 122 VAL PRO VAL THR SER ASN ILE ALA LYS VAL TYR PRO PHE SEQRES 6 A 122 GLN VAL LEU LEU SER ALA THR THR THR GLY LEU GLN VAL SEQRES 7 A 122 ASP CYS LYS ALA GLN ALA GLU GLN ILE ARG SER ILE ALA SEQRES 8 A 122 THR GLU ARG LEU LEU ARG PRO ILE GLY ARG VAL SER ALA SEQRES 9 A 122 ALA GLU LEU ALA GLN LEU ASP GLU ALA LEU LYS LEU HIS SEQRES 10 A 122 LEU ASP LEU TRP SER SEQRES 1 B 122 GLY PRO GLU LEU VAL MET ARG ARG GLY GLU ILE TRP GLN SEQRES 2 B 122 VAL ASP LEU ASP PRO ALA ARG GLY SER GLU ALA ASN ASN SEQRES 3 B 122 GLN ARG PRO ALA VAL VAL VAL SER ASN ASP ARG ALA ASN SEQRES 4 B 122 ALA THR ALA THR ARG LEU GLY ARG GLY VAL ILE THR VAL SEQRES 5 B 122 VAL PRO VAL THR SER ASN ILE ALA LYS VAL TYR PRO PHE SEQRES 6 B 122 GLN VAL LEU LEU SER ALA THR THR THR GLY LEU GLN VAL SEQRES 7 B 122 ASP CYS LYS ALA GLN ALA GLU GLN ILE ARG SER ILE ALA SEQRES 8 B 122 THR GLU ARG LEU LEU ARG PRO ILE GLY ARG VAL SER ALA SEQRES 9 B 122 ALA GLU LEU ALA GLN LEU ASP GLU ALA LEU LYS LEU HIS SEQRES 10 B 122 LEU ASP LEU TRP SER SEQRES 1 C 17 THR LEU GLU ASP ASP TYR ALA ASN ALA TRP GLN GLU TRP SEQRES 2 C 17 SER ALA ALA GLY HELIX 1 AA1 ASN A 31 GLY A 42 1 12 HELIX 2 AA2 SER A 66 GLY A 71 1 6 HELIX 3 AA3 GLU A 81 ILE A 83 5 3 HELIX 4 AA4 SER A 99 ASP A 115 1 17 HELIX 5 AA5 ASN B 31 GLY B 42 1 12 HELIX 6 AA6 SER B 66 GLY B 71 1 6 HELIX 7 AA7 GLU B 81 ILE B 83 5 3 HELIX 8 AA8 SER B 99 LEU B 114 1 16 HELIX 9 AA9 LEU C 43 GLU C 53 1 11 SHEET 1 AA1 4 GLN A 62 LEU A 65 0 SHEET 2 AA1 4 CYS A 76 GLN A 79 -1 O CYS A 76 N LEU A 65 SHEET 3 AA1 4 VAL A 45 THR A 52 -1 N PRO A 50 O GLN A 79 SHEET 4 AA1 4 ARG A 84 ALA A 87 -1 O ILE A 86 N ILE A 46 SHEET 1 AA2 6 GLN A 62 LEU A 65 0 SHEET 2 AA2 6 CYS A 76 GLN A 79 -1 O CYS A 76 N LEU A 65 SHEET 3 AA2 6 VAL A 45 THR A 52 -1 N PRO A 50 O GLN A 79 SHEET 4 AA2 6 GLN A 23 VAL A 28 -1 N VAL A 27 O VAL A 49 SHEET 5 AA2 6 GLU A 6 ASP A 11 -1 N VAL A 10 O ARG A 24 SHEET 6 AA2 6 LEU A 91 ARG A 97 -1 O LEU A 92 N GLN A 9 SHEET 1 AA3 4 GLN B 62 LEU B 65 0 SHEET 2 AA3 4 CYS B 76 GLN B 79 -1 O CYS B 76 N LEU B 65 SHEET 3 AA3 4 VAL B 45 THR B 52 -1 N PRO B 50 O GLN B 79 SHEET 4 AA3 4 ARG B 84 ALA B 87 -1 O ILE B 86 N ILE B 46 SHEET 1 AA4 6 GLN B 62 LEU B 65 0 SHEET 2 AA4 6 CYS B 76 GLN B 79 -1 O CYS B 76 N LEU B 65 SHEET 3 AA4 6 VAL B 45 THR B 52 -1 N PRO B 50 O GLN B 79 SHEET 4 AA4 6 GLN B 23 VAL B 28 -1 N VAL B 27 O VAL B 49 SHEET 5 AA4 6 GLU B 6 ASP B 11 -1 N GLU B 6 O VAL B 28 SHEET 6 AA4 6 LEU B 91 ARG B 97 -1 O LEU B 92 N GLN B 9 CISPEP 1 ASP A 13 PRO A 14 0 7.36 CISPEP 2 ASP B 13 PRO B 14 0 12.00 CRYST1 83.271 83.271 141.265 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012009 0.006933 0.000000 0.00000 SCALE2 0.000000 0.013867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007079 0.00000