HEADER DNA BINDING PROTEIN 17-JAN-21 7DWO TITLE CRYSTAL STRUCTURE OF VIBRIO FISCHERI DARR IN COMPLEX WITH DNA REVEALS TITLE 2 THE TRANSCRIPTIONAL ACTIVATION MECHANISM OF LTTR FAMILY MEMBERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED DNA-BINDING TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI ES114; SOURCE 3 ORGANISM_TAXID: 312309; SOURCE 4 STRAIN: ES114; SOURCE 5 GENE: YJIE, VF_1545; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTIONAL REGULATORS, TETRAMER, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.W.WANG,H.WU,J.H.HE,F.YU REVDAT 2 29-NOV-23 7DWO 1 REMARK REVDAT 1 07-JUL-21 7DWO 0 JRNL AUTH W.WANG,H.WU,Q.XIAO,H.ZHOU,M.LI,Q.XU,Q.WANG,F.YU,J.HE JRNL TITL CRYSTAL STRUCTURE DETAILS OF VIBRIO FISCHERI DARR AND MUTANT JRNL TITL 2 DARR-M202I FROM LTTR FAMILY REVEALS THEIR ACTIVATION JRNL TITL 3 MECHANISM. JRNL REF INT.J.BIOL.MACROMOL. V. 183 2354 2021 JRNL REFN ISSN 0141-8130 JRNL PMID 34081954 JRNL DOI 10.1016/J.IJBIOMAC.2021.05.186 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5600 - 5.2127 0.98 2727 135 0.2345 0.2520 REMARK 3 2 5.2127 - 4.1411 1.00 2647 128 0.1899 0.2181 REMARK 3 3 4.1411 - 3.6187 1.00 2606 155 0.2179 0.2420 REMARK 3 4 3.6187 - 3.2883 1.00 2584 138 0.2469 0.2746 REMARK 3 5 3.2883 - 3.0529 1.00 2555 147 0.2696 0.3264 REMARK 3 6 3.0529 - 2.8731 1.00 2578 122 0.2755 0.2950 REMARK 3 7 2.8731 - 2.7293 1.00 2573 136 0.2795 0.3841 REMARK 3 8 2.7293 - 2.6110 0.99 2556 125 0.2639 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1480 8.0676 20.3324 REMARK 3 T TENSOR REMARK 3 T11: 0.4696 T22: 0.5168 REMARK 3 T33: 0.9426 T12: -0.0560 REMARK 3 T13: 0.0734 T23: -0.2626 REMARK 3 L TENSOR REMARK 3 L11: 1.0809 L22: 3.0231 REMARK 3 L33: 2.2229 L12: -0.6157 REMARK 3 L13: 0.3807 L23: -2.3686 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: -0.1878 S13: 0.3325 REMARK 3 S21: 0.1347 S22: -0.0677 S23: 0.3151 REMARK 3 S31: -0.2621 S32: 0.0111 S33: -0.1050 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9897 32.1913 -1.2845 REMARK 3 T TENSOR REMARK 3 T11: 0.3814 T22: 0.3064 REMARK 3 T33: 0.2462 T12: 0.0240 REMARK 3 T13: -0.0380 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 8.9914 L22: 5.2418 REMARK 3 L33: 2.8634 L12: -1.2991 REMARK 3 L13: 2.1540 L23: -0.5201 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.2635 S13: 0.6129 REMARK 3 S21: -0.0956 S22: -0.0660 S23: 0.2976 REMARK 3 S31: 0.1211 S32: 0.2489 S33: -0.0717 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7859 23.3630 -4.2801 REMARK 3 T TENSOR REMARK 3 T11: 0.4426 T22: 0.3438 REMARK 3 T33: 0.3086 T12: 0.0003 REMARK 3 T13: 0.0293 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 3.3083 L22: 2.9011 REMARK 3 L33: 2.5167 L12: 1.4052 REMARK 3 L13: -0.4194 L23: 0.3017 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: -0.0479 S13: -0.3643 REMARK 3 S21: -0.3063 S22: -0.0059 S23: 0.2199 REMARK 3 S31: -0.0119 S32: -0.0324 S33: 0.1981 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1388 26.3849 6.3794 REMARK 3 T TENSOR REMARK 3 T11: 0.3837 T22: 0.4683 REMARK 3 T33: 0.5619 T12: 0.0107 REMARK 3 T13: 0.0409 T23: 0.1757 REMARK 3 L TENSOR REMARK 3 L11: 4.9400 L22: 4.7747 REMARK 3 L33: 6.3985 L12: 0.0397 REMARK 3 L13: 0.8232 L23: -0.3107 REMARK 3 S TENSOR REMARK 3 S11: 0.1859 S12: -0.1760 S13: -0.4381 REMARK 3 S21: -0.1223 S22: -0.2953 S23: -1.0292 REMARK 3 S31: 0.0668 S32: 0.5490 S33: 0.0928 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0361 26.2421 -10.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.5860 T22: 0.3440 REMARK 3 T33: 0.3039 T12: -0.0140 REMARK 3 T13: -0.0589 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 4.2336 L22: 3.7043 REMARK 3 L33: 3.4385 L12: 0.0180 REMARK 3 L13: 1.3796 L23: -0.3679 REMARK 3 S TENSOR REMARK 3 S11: -0.1338 S12: 0.7927 S13: -0.0761 REMARK 3 S21: -1.1010 S22: 0.1713 S23: 0.2552 REMARK 3 S31: -0.3348 S32: -0.3073 S33: 0.1278 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9961 -14.2416 -0.1056 REMARK 3 T TENSOR REMARK 3 T11: 0.6358 T22: 0.7318 REMARK 3 T33: 0.8960 T12: 0.0294 REMARK 3 T13: -0.1956 T23: 0.2691 REMARK 3 L TENSOR REMARK 3 L11: 0.3260 L22: 2.7353 REMARK 3 L33: 0.4775 L12: 0.6010 REMARK 3 L13: -0.0022 L23: 2.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.5479 S13: -0.0326 REMARK 3 S21: -0.7157 S22: -0.3282 S23: 0.1417 REMARK 3 S31: -0.4340 S32: 0.1289 S33: 0.2243 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6380 21.9267 22.9131 REMARK 3 T TENSOR REMARK 3 T11: 0.4365 T22: 0.4330 REMARK 3 T33: 0.3296 T12: -0.1310 REMARK 3 T13: -0.0563 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.4872 L22: 5.0415 REMARK 3 L33: 2.5749 L12: -2.1518 REMARK 3 L13: -0.0090 L23: -0.9941 REMARK 3 S TENSOR REMARK 3 S11: 0.1044 S12: 0.1183 S13: -0.1137 REMARK 3 S21: 0.3856 S22: -0.2369 S23: -0.0445 REMARK 3 S31: -0.0748 S32: -0.0207 S33: 0.1546 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9772 41.3265 12.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.5173 T22: 0.5140 REMARK 3 T33: 0.6589 T12: 0.1775 REMARK 3 T13: 0.1382 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 3.4296 L22: 2.9848 REMARK 3 L33: 5.5849 L12: -0.1415 REMARK 3 L13: 1.3021 L23: 0.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.2265 S12: -0.2611 S13: 0.4372 REMARK 3 S21: -0.2033 S22: 0.1046 S23: 0.9386 REMARK 3 S31: -0.6743 S32: -0.6764 S33: -0.3359 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 224 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6859 33.2919 21.1466 REMARK 3 T TENSOR REMARK 3 T11: 0.4874 T22: 0.4327 REMARK 3 T33: 0.3387 T12: -0.1331 REMARK 3 T13: 0.0085 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.3539 L22: 3.3504 REMARK 3 L33: 4.8088 L12: -1.0171 REMARK 3 L13: 1.2441 L23: -2.6079 REMARK 3 S TENSOR REMARK 3 S11: 0.1742 S12: -0.2671 S13: 0.2278 REMARK 3 S21: 0.7009 S22: -0.2977 S23: -0.0236 REMARK 3 S31: -0.6040 S32: -0.0230 S33: 0.1627 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7DWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22031 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 29.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YDW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M SODIUM CHLORIDE, 0.1M MES PH6.0, REMARK 280 20%PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.43150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 90.11150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.43150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 90.11150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 293 REMARK 465 THR B 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 167 -155.31 -115.93 REMARK 500 ILE A 186 77.68 -104.18 REMARK 500 GLU A 211 12.29 -66.90 REMARK 500 SER A 221 141.00 -170.26 REMARK 500 THR B 167 -158.75 -125.35 REMARK 500 SER B 221 139.41 -171.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 7DWO A 1 293 UNP Q5E4K6 Q5E4K6_ALIF1 1 293 DBREF 7DWO B 1 293 UNP Q5E4K6 Q5E4K6_ALIF1 1 293 SEQADV 7DWO ILE A 202 UNP Q5E4K6 MET 202 ENGINEERED MUTATION SEQADV 7DWO ILE B 202 UNP Q5E4K6 MET 202 ENGINEERED MUTATION SEQRES 1 A 293 MET ASN VAL GLU SER LYS TRP LEU GLU ASP PHE LEU VAL SEQRES 2 A 293 LEU ALA LYS VAL LYS ASN PHE SER GLN ALA ALA GLU LEU SEQRES 3 A 293 ARG ASN VAL THR GLN PRO ALA PHE SER ARG ARG ILE ARG SEQRES 4 A 293 LEU LEU GLU ASP THR VAL GLY ALA GLU LEU VAL ASP ARG SEQRES 5 A 293 LYS SER LYS PRO ILE GLU LEU THR PRO SER GLY LYS LEU SEQRES 6 A 293 PHE ARG ILE THR ALA ARG THR LEU VAL ASN GLN ILE GLU SEQRES 7 A 293 ALA GLY ILE SER GLN ILE SER ASP LEU SER GLN LEU GLY SEQRES 8 A 293 GLY ASN VAL VAL GLN VAL ALA ALA ALA HIS SER LEU ALA SEQRES 9 A 293 THR SER LEU ILE PRO LYS MET GLN GLN ALA PHE ASP GLU SEQRES 10 A 293 GLY ASP TYR LYS PRO ILE LEU SER VAL GLU ALA ILE ASP SEQRES 11 A 293 VAL ASP GLU ALA THR LYS GLU LEU ARG GLU GLY ALA CYS SEQRES 12 A 293 ASP ILE LEU LEU ALA PHE ASP ASP ASP ILE LEU ARG LEU SEQRES 13 A 293 PRO PRO TYR GLN SER GLN LEU ILE ALA LYS THR GLU LEU SEQRES 14 A 293 LEU PRO VAL SER ALA CYS ASP GLU MET GLY LYS PRO ILE SEQRES 15 A 293 TYR ASP PHE ILE SER GLN GLY ALA VAL PRO TRP LEU THR SEQRES 16 A 293 TYR SER SER THR SER TYR ILE GLY ARG GLN VAL GLU ILE SEQRES 17 A 293 ILE ARG GLU GLN VAL ALA LEU THR PRO ILE PHE SER SER SEQRES 18 A 293 SER MET THR ASP MET LEU LYS ILE LEU VAL LEU ASN LYS SEQRES 19 A 293 GLN GLY ILE ALA TRP LEU PRO ALA TYR SER ILE GLN GLU SEQRES 20 A 293 GLU LEU ALA GLN LYS LYS VAL ALA ILE ILE GLY GLU GLN SEQRES 21 A 293 SER LEU ARG LEU PRO ILE GLU TYR TYR ALA TYR ARG TYR SEQRES 22 A 293 GLN ALA ARG LEU HIS PRO ALA GLY GLU LYS VAL TRP SER SEQRES 23 A 293 ILE LEU CYS ASN LEU ASP THR SEQRES 1 B 293 MET ASN VAL GLU SER LYS TRP LEU GLU ASP PHE LEU VAL SEQRES 2 B 293 LEU ALA LYS VAL LYS ASN PHE SER GLN ALA ALA GLU LEU SEQRES 3 B 293 ARG ASN VAL THR GLN PRO ALA PHE SER ARG ARG ILE ARG SEQRES 4 B 293 LEU LEU GLU ASP THR VAL GLY ALA GLU LEU VAL ASP ARG SEQRES 5 B 293 LYS SER LYS PRO ILE GLU LEU THR PRO SER GLY LYS LEU SEQRES 6 B 293 PHE ARG ILE THR ALA ARG THR LEU VAL ASN GLN ILE GLU SEQRES 7 B 293 ALA GLY ILE SER GLN ILE SER ASP LEU SER GLN LEU GLY SEQRES 8 B 293 GLY ASN VAL VAL GLN VAL ALA ALA ALA HIS SER LEU ALA SEQRES 9 B 293 THR SER LEU ILE PRO LYS MET GLN GLN ALA PHE ASP GLU SEQRES 10 B 293 GLY ASP TYR LYS PRO ILE LEU SER VAL GLU ALA ILE ASP SEQRES 11 B 293 VAL ASP GLU ALA THR LYS GLU LEU ARG GLU GLY ALA CYS SEQRES 12 B 293 ASP ILE LEU LEU ALA PHE ASP ASP ASP ILE LEU ARG LEU SEQRES 13 B 293 PRO PRO TYR GLN SER GLN LEU ILE ALA LYS THR GLU LEU SEQRES 14 B 293 LEU PRO VAL SER ALA CYS ASP GLU MET GLY LYS PRO ILE SEQRES 15 B 293 TYR ASP PHE ILE SER GLN GLY ALA VAL PRO TRP LEU THR SEQRES 16 B 293 TYR SER SER THR SER TYR ILE GLY ARG GLN VAL GLU ILE SEQRES 17 B 293 ILE ARG GLU GLN VAL ALA LEU THR PRO ILE PHE SER SER SEQRES 18 B 293 SER MET THR ASP MET LEU LYS ILE LEU VAL LEU ASN LYS SEQRES 19 B 293 GLN GLY ILE ALA TRP LEU PRO ALA TYR SER ILE GLN GLU SEQRES 20 B 293 GLU LEU ALA GLN LYS LYS VAL ALA ILE ILE GLY GLU GLN SEQRES 21 B 293 SER LEU ARG LEU PRO ILE GLU TYR TYR ALA TYR ARG TYR SEQRES 22 B 293 GLN ALA ARG LEU HIS PRO ALA GLY GLU LYS VAL TRP SER SEQRES 23 B 293 ILE LEU CYS ASN LEU ASP THR FORMUL 3 HOH *29(H2 O) HELIX 1 AA1 GLU A 4 LYS A 18 1 15 HELIX 2 AA2 ASN A 19 ARG A 27 1 9 HELIX 3 AA3 THR A 30 GLY A 46 1 17 HELIX 4 AA4 THR A 60 GLY A 91 1 32 HELIX 5 AA5 ALA A 100 ALA A 114 1 15 HELIX 6 AA6 GLU A 133 GLY A 141 1 9 HELIX 7 AA7 ASP A 151 LEU A 156 1 6 HELIX 8 AA8 ILE A 202 GLU A 207 1 6 HELIX 9 AA9 ILE A 208 VAL A 213 5 6 HELIX 10 AB1 MET A 223 ASN A 233 1 11 HELIX 11 AB2 ILE A 245 GLN A 251 1 7 HELIX 12 AB3 GLU A 259 ARG A 263 5 5 HELIX 13 AB4 HIS A 278 ASN A 290 1 13 HELIX 14 AB5 GLU B 4 LYS B 18 1 15 HELIX 15 AB6 ASN B 19 ARG B 27 1 9 HELIX 16 AB7 THR B 30 GLY B 46 1 17 HELIX 17 AB8 THR B 60 GLY B 91 1 32 HELIX 18 AB9 ALA B 100 ALA B 114 1 15 HELIX 19 AC1 GLU B 133 GLU B 140 1 8 HELIX 20 AC2 SER B 200 GLU B 207 1 8 HELIX 21 AC3 MET B 223 ASN B 233 1 11 HELIX 22 AC4 ILE B 245 GLN B 251 1 7 HELIX 23 AC5 GLU B 259 ARG B 263 5 5 HELIX 24 AC6 HIS B 278 ASN B 290 1 13 SHEET 1 AA1 2 VAL A 50 ASP A 51 0 SHEET 2 AA1 2 GLU A 58 LEU A 59 -1 O GLU A 58 N ASP A 51 SHEET 1 AA2 3 ALA A 238 PRO A 241 0 SHEET 2 AA2 3 GLN A 160 ALA A 174 -1 N LEU A 170 O LEU A 240 SHEET 3 AA2 3 VAL A 254 ILE A 256 -1 O ALA A 255 N SER A 173 SHEET 1 AA3 8 ALA A 238 PRO A 241 0 SHEET 2 AA3 8 GLN A 160 ALA A 174 -1 N LEU A 170 O LEU A 240 SHEET 3 AA3 8 LEU A 264 ARG A 272 -1 O LEU A 264 N LEU A 169 SHEET 4 AA3 8 ILE A 145 PHE A 149 -1 N LEU A 146 O TYR A 271 SHEET 5 AA3 8 VAL A 94 ALA A 99 1 N ALA A 98 O LEU A 147 SHEET 6 AA3 8 ILE A 123 ALA A 128 1 O SER A 125 N VAL A 97 SHEET 7 AA3 8 LEU B 215 SER B 221 1 O SER B 220 N LEU A 124 SHEET 8 AA3 8 VAL B 191 THR B 195 1 N TRP B 193 O THR B 216 SHEET 1 AA4 8 VAL A 191 THR A 195 0 SHEET 2 AA4 8 LEU A 215 SER A 221 1 O THR A 216 N VAL A 191 SHEET 3 AA4 8 ILE B 123 ALA B 128 1 O VAL B 126 N SER A 220 SHEET 4 AA4 8 VAL B 94 ALA B 99 1 N VAL B 97 O SER B 125 SHEET 5 AA4 8 ILE B 145 PHE B 149 1 O LEU B 147 N ALA B 98 SHEET 6 AA4 8 LEU B 264 ARG B 272 -1 O TYR B 269 N ALA B 148 SHEET 7 AA4 8 GLN B 160 ALA B 174 -1 N GLN B 160 O ARG B 272 SHEET 8 AA4 8 ALA B 238 PRO B 241 -1 O ALA B 238 N VAL B 172 SHEET 1 AA5 8 VAL A 191 THR A 195 0 SHEET 2 AA5 8 LEU A 215 SER A 221 1 O THR A 216 N VAL A 191 SHEET 3 AA5 8 ILE B 123 ALA B 128 1 O VAL B 126 N SER A 220 SHEET 4 AA5 8 VAL B 94 ALA B 99 1 N VAL B 97 O SER B 125 SHEET 5 AA5 8 ILE B 145 PHE B 149 1 O LEU B 147 N ALA B 98 SHEET 6 AA5 8 LEU B 264 ARG B 272 -1 O TYR B 269 N ALA B 148 SHEET 7 AA5 8 GLN B 160 ALA B 174 -1 N GLN B 160 O ARG B 272 SHEET 8 AA5 8 VAL B 254 ILE B 256 -1 O ALA B 255 N SER B 173 SHEET 1 AA6 2 VAL B 50 ASP B 51 0 SHEET 2 AA6 2 GLU B 58 LEU B 59 -1 O GLU B 58 N ASP B 51 CISPEP 1 LYS A 55 PRO A 56 0 1.08 CISPEP 2 PRO A 157 PRO A 158 0 5.84 CISPEP 3 LYS B 55 PRO B 56 0 2.65 CISPEP 4 PRO B 157 PRO B 158 0 3.86 CRYST1 74.863 180.223 51.657 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005549 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019358 0.00000