HEADER PLANT PROTEIN 18-JAN-21 7DXH TITLE CRYO-EM STRUCTURE OF PSII INTERMEDIATE PSB28-PSII COMPLEX CAVEAT 7DXH CLA D 406 HAS WRONG CHIRALITY AT ATOM C8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: TSL0063 PROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PHOTOSYSTEM II PROTEIN D1; COMPND 9 CHAIN: a; COMPND 10 SYNONYM: PSII D1 PROTEIN,PHOTOSYSTEM II Q(B) PROTEIN; COMPND 11 MOL_ID: 4; COMPND 12 MOLECULE: PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN; COMPND 13 CHAIN: b; COMPND 14 SYNONYM: PSII 47 KDA PROTEIN,PROTEIN CP-47; COMPND 15 MOL_ID: 5; COMPND 16 MOLECULE: PHOTOSYSTEM II D2 PROTEIN; COMPND 17 CHAIN: d; COMPND 18 SYNONYM: PSII D2 PROTEIN,PHOTOSYSTEM Q(A) PROTEIN; COMPND 19 MOL_ID: 6; COMPND 20 MOLECULE: CYTOCHROME B559 SUBUNIT ALPHA; COMPND 21 CHAIN: e; COMPND 22 SYNONYM: PSII REACTION CENTER SUBUNIT V; COMPND 23 MOL_ID: 7; COMPND 24 MOLECULE: CYTOCHROME B559 SUBUNIT BETA; COMPND 25 CHAIN: f; COMPND 26 SYNONYM: PSII REACTION CENTER SUBUNIT VI; COMPND 27 MOL_ID: 8; COMPND 28 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN H; COMPND 29 CHAIN: h; COMPND 30 SYNONYM: PSII-H; COMPND 31 MOL_ID: 9; COMPND 32 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN I; COMPND 33 CHAIN: i; COMPND 34 SYNONYM: PSII-I,PSII 4.4 KDA PROTEIN; COMPND 35 MOL_ID: 10; COMPND 36 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN L; COMPND 37 CHAIN: l; COMPND 38 SYNONYM: PSII-L; COMPND 39 MOL_ID: 11; COMPND 40 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN M; COMPND 41 CHAIN: m; COMPND 42 SYNONYM: PSII-M; COMPND 43 MOL_ID: 12; COMPND 44 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN T; COMPND 45 CHAIN: t; COMPND 46 SYNONYM: PSII-T,PSII-TC; COMPND 47 MOL_ID: 13; COMPND 48 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN X; COMPND 49 CHAIN: x; COMPND 50 MOL_ID: 14; COMPND 51 MOLECULE: PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN; COMPND 52 CHAIN: c; COMPND 53 SYNONYM: PSII 43 KDA PROTEIN,PROTEIN CP-43; COMPND 54 MOL_ID: 15; COMPND 55 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN K; COMPND 56 CHAIN: k; COMPND 57 MOL_ID: 16; COMPND 58 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN Z; COMPND 59 CHAIN: z; COMPND 60 SYNONYM: PSII-Z; COMPND 61 MOL_ID: 17; COMPND 62 MOLECULE: PHOTOSYSTEM II REACTION CENTER PROTEIN YCF12; COMPND 63 CHAIN: y; COMPND 64 MOL_ID: 18; COMPND 65 MOLECULE: UNIDENTIFIED TRANSMEMBRANE PROTEIN; COMPND 66 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 3 ORGANISM_TAXID: 32053; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 6 ORGANISM_TAXID: 32053; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 9 ORGANISM_TAXID: 32053; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 12 ORGANISM_TAXID: 32053; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 15 ORGANISM_TAXID: 32053; SOURCE 16 MOL_ID: 6; SOURCE 17 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 18 ORGANISM_TAXID: 32053; SOURCE 19 MOL_ID: 7; SOURCE 20 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 21 ORGANISM_TAXID: 32053; SOURCE 22 MOL_ID: 8; SOURCE 23 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 24 ORGANISM_TAXID: 32053; SOURCE 25 MOL_ID: 9; SOURCE 26 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 27 ORGANISM_TAXID: 32053; SOURCE 28 MOL_ID: 10; SOURCE 29 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 30 ORGANISM_TAXID: 32053; SOURCE 31 MOL_ID: 11; SOURCE 32 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 33 ORGANISM_TAXID: 32053; SOURCE 34 MOL_ID: 12; SOURCE 35 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 36 ORGANISM_TAXID: 32053; SOURCE 37 MOL_ID: 13; SOURCE 38 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 39 ORGANISM_TAXID: 32053; SOURCE 40 MOL_ID: 14; SOURCE 41 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 42 ORGANISM_TAXID: 32053; SOURCE 43 MOL_ID: 15; SOURCE 44 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 45 ORGANISM_TAXID: 32053; SOURCE 46 MOL_ID: 16; SOURCE 47 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 48 ORGANISM_TAXID: 32053; SOURCE 49 MOL_ID: 17; SOURCE 50 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 51 ORGANISM_TAXID: 32053; SOURCE 52 MOL_ID: 18; SOURCE 53 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VULCANUS; SOURCE 54 ORGANISM_TAXID: 32053 KEYWDS PHOTOSYSTEM II; CRYO-EM; ASSEMBLY; REPAIR; PSB28; TSL0063, PLANT KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.F.SUI,J.R.SHEN,G.Y.HAN,Y.N.XIAO,G.Q.HUANG REVDAT 2 06-APR-22 7DXH 1 JRNL FORMUL REVDAT 1 30-JUN-21 7DXH 0 JRNL AUTH Y.XIAO,G.HUANG,X.YOU,Q.ZHU,W.WANG,T.KUANG,G.HAN,S.F.SUI, JRNL AUTH 2 J.R.SHEN JRNL TITL STRUCTURAL INSIGHTS INTO CYANOBACTERIAL PHOTOSYSTEM II JRNL TITL 2 INTERMEDIATES ASSOCIATED WITH PSB28 AND TSL0063. JRNL REF NAT.PLANTS V. 7 1132 2021 JRNL REFN ESSN 2055-0278 JRNL PMID 34226692 JRNL DOI 10.1038/S41477-021-00961-7 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.140 REMARK 3 NUMBER OF PARTICLES : 194738 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7DXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300020381. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF PSII REMARK 245 INTERMEDIATE PSB28-PSII COMPLEX. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, a, b, d, e, f, h, i, l, REMARK 350 AND CHAINS: m, t, x, c, k, z, y, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 MET A 4 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 SER A 116 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 TYR B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 GLU B 7 REMARK 465 GLY B 8 REMARK 465 MET a 1 REMARK 465 THR a 2 REMARK 465 THR a 3 REMARK 465 THR a 4 REMARK 465 LEU a 5 REMARK 465 GLN a 6 REMARK 465 ARG a 7 REMARK 465 ARG a 8 REMARK 465 GLU a 9 REMARK 465 SER a 10 REMARK 465 ALA a 11 REMARK 465 GLU a 231 REMARK 465 SER a 232 REMARK 465 ALA a 233 REMARK 465 ASN a 234 REMARK 465 TYR a 235 REMARK 465 GLY a 236 REMARK 465 TYR a 237 REMARK 465 LYS a 238 REMARK 465 PHE a 239 REMARK 465 GLY a 240 REMARK 465 GLN a 241 REMARK 465 GLU a 242 REMARK 465 GLU a 243 REMARK 465 GLU a 244 REMARK 465 THR a 245 REMARK 465 TYR a 246 REMARK 465 ILE a 259 REMARK 465 PHE a 260 REMARK 465 GLN a 261 REMARK 465 TYR a 262 REMARK 465 ALA a 263 REMARK 465 SER a 264 REMARK 465 PHE a 265 REMARK 465 ASN a 266 REMARK 465 ASN a 267 REMARK 465 ARG a 334 REMARK 465 ASN a 335 REMARK 465 ALA a 336 REMARK 465 HIS a 337 REMARK 465 ASN a 338 REMARK 465 PHE a 339 REMARK 465 PRO a 340 REMARK 465 LEU a 341 REMARK 465 ASP a 342 REMARK 465 LEU a 343 REMARK 465 ALA a 344 REMARK 465 SER a 345 REMARK 465 ALA a 346 REMARK 465 GLU a 347 REMARK 465 SER a 348 REMARK 465 ALA a 349 REMARK 465 PRO a 350 REMARK 465 VAL a 351 REMARK 465 ALA a 352 REMARK 465 MET a 353 REMARK 465 ILE a 354 REMARK 465 ALA a 355 REMARK 465 PRO a 356 REMARK 465 SER a 357 REMARK 465 ILE a 358 REMARK 465 ASN a 359 REMARK 465 GLY a 360 REMARK 465 TYR b 496 REMARK 465 GLN b 497 REMARK 465 LYS b 498 REMARK 465 VAL b 499 REMARK 465 GLY b 500 REMARK 465 ASP b 501 REMARK 465 VAL b 502 REMARK 465 THR b 503 REMARK 465 THR b 504 REMARK 465 ARG b 505 REMARK 465 LYS b 506 REMARK 465 GLU d 11 REMARK 465 ARG d 12 REMARK 465 LEU d 352 REMARK 465 MET e 1 REMARK 465 ALA e 2 REMARK 465 GLY e 3 REMARK 465 THR e 4 REMARK 465 THR e 5 REMARK 465 GLY e 6 REMARK 465 GLU e 7 REMARK 465 ARG e 8 REMARK 465 PRO e 9 REMARK 465 PHE e 10 REMARK 465 SER e 11 REMARK 465 ASP e 12 REMARK 465 ILE e 13 REMARK 465 ILE e 14 REMARK 465 THR e 15 REMARK 465 SER e 16 REMARK 465 VAL e 17 REMARK 465 ARG e 18 REMARK 465 TYR e 19 REMARK 465 TRP e 20 REMARK 465 LYS e 84 REMARK 465 MET f 1 REMARK 465 THR f 2 REMARK 465 SER f 3 REMARK 465 ASN f 4 REMARK 465 THR f 5 REMARK 465 PRO f 6 REMARK 465 ASN f 7 REMARK 465 GLN f 8 REMARK 465 GLU f 9 REMARK 465 PRO f 10 REMARK 465 VAL f 11 REMARK 465 SER f 12 REMARK 465 TYR f 13 REMARK 465 PRO f 14 REMARK 465 ILE f 15 REMARK 465 PHE f 16 REMARK 465 ARG f 45 REMARK 465 ALA h 64 REMARK 465 LEU h 65 REMARK 465 GLY h 66 REMARK 465 ARG i 30 REMARK 465 ASN i 31 REMARK 465 PRO i 32 REMARK 465 LYS i 33 REMARK 465 ARG i 34 REMARK 465 LYS i 35 REMARK 465 ASP i 36 REMARK 465 LEU i 37 REMARK 465 GLU i 38 REMARK 465 MET m 1 REMARK 465 GLU m 2 REMARK 465 LYS m 34 REMARK 465 SER m 35 REMARK 465 SER m 36 REMARK 465 ARG t 28 REMARK 465 ILE t 29 REMARK 465 THR t 30 REMARK 465 LYS t 31 REMARK 465 LYS t 32 REMARK 465 GLN x 38 REMARK 465 ARG x 39 REMARK 465 SER x 40 REMARK 465 LEU x 41 REMARK 465 ALA c 23 REMARK 465 THR c 24 REMARK 465 ASN c 25 REMARK 465 ARG c 26 REMARK 465 ASP c 27 REMARK 465 ALA c 326 REMARK 465 ASN c 327 REMARK 465 VAL c 328 REMARK 465 GLY c 329 REMARK 465 SER c 330 REMARK 465 ALA c 331 REMARK 465 GLN c 332 REMARK 465 GLY c 333 REMARK 465 PRO c 334 REMARK 465 THR c 335 REMARK 465 GLY c 336 REMARK 465 GLY c 409 REMARK 465 VAL c 410 REMARK 465 ALA c 411 REMARK 465 THR c 412 REMARK 465 GLU c 413 REMARK 465 ILE c 414 REMARK 465 ASN c 415 REMARK 465 SER c 416 REMARK 465 VAL c 417 REMARK 465 ASN c 418 REMARK 465 ALA c 452 REMARK 465 ALA c 453 REMARK 465 GLY c 454 REMARK 465 PHE c 455 REMARK 465 GLU c 456 REMARK 465 LYS c 457 REMARK 465 GLY c 458 REMARK 465 ILE c 459 REMARK 465 ASP c 460 REMARK 465 ARG c 461 REMARK 465 GLU c 462 REMARK 465 SER c 463 REMARK 465 GLU c 464 REMARK 465 PRO c 465 REMARK 465 VAL c 466 REMARK 465 LEU c 467 REMARK 465 SER c 468 REMARK 465 MET c 469 REMARK 465 PRO c 470 REMARK 465 SER c 471 REMARK 465 LEU c 472 REMARK 465 ASP c 473 REMARK 465 MET k 1 REMARK 465 ILE k 2 REMARK 465 ASP k 3 REMARK 465 ALA k 4 REMARK 465 LEU k 5 REMARK 465 VAL k 6 REMARK 465 LEU k 7 REMARK 465 VAL k 8 REMARK 465 ALA k 9 REMARK 465 LYS k 10 REMARK 465 LEU k 11 REMARK 465 ARG k 46 REMARK 465 ASN y 29 REMARK 465 LEU y 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 36 CG CD1 CD2 REMARK 470 GLU a 229 CG CD OE1 OE2 REMARK 470 THR a 230 CB OG1 CG2 REMARK 470 ARG a 279 CD NE CZ NH1 NH2 REMARK 470 THR b 297 OG1 CG2 REMARK 470 SER d 230 OG REMARK 470 THR d 231 OG1 CG2 REMARK 470 GLN c 28 CG CD OE1 NE2 REMARK 470 GLU c 104 CG CD OE1 OE2 REMARK 470 ARG c 135 CG CD NE CZ NH1 NH2 REMARK 470 GLU c 141 CG CD OE1 OE2 REMARK 470 GLN z 31 CG CD OE1 NE2 REMARK 470 ASP z 32 CG OD1 OD2 REMARK 470 ASP z 34 CG OD1 OD2 REMARK 470 ARG z 35 CG CD NE CZ NH1 NH2 REMARK 470 SER z 36 OG REMARK 470 LYS z 37 CG CD CE NZ REMARK 470 VAL z 62 CG1 CG2 REMARK 470 GLU y 1 CG CD OE1 OE2 REMARK 470 VAL y 2 CG1 CG2 REMARK 470 ILE y 3 CG1 CG2 CD1 REMARK 470 GLN y 5 CG CD OE1 NE2 REMARK 470 LEU y 6 CG CD1 CD2 REMARK 470 THR y 7 OG1 CG2 REMARK 470 MET y 8 CG SD CE REMARK 470 ILE y 9 CG1 CG2 CD1 REMARK 470 MET y 11 CG SD CE REMARK 470 ILE y 12 CG1 CG2 CD1 REMARK 470 ILE y 14 CG1 CG2 CD1 REMARK 470 PRO y 17 CG CD REMARK 470 MET y 18 CG SD CE REMARK 470 ILE y 19 CG1 CG2 CD1 REMARK 470 ILE y 20 CG1 CG2 CD1 REMARK 470 PHE y 21 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU y 22 CG CD1 CD2 REMARK 470 LEU y 23 CG CD1 CD2 REMARK 470 VAL y 25 CG1 CG2 REMARK 470 ARG y 26 CG CD NE CZ NH1 NH2 REMARK 470 ARG y 27 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 LEU B 37 CD2 LEU b 218 1.22 REMARK 500 ND2 ASN d 263 O3D MGE d 410 1.30 REMARK 500 N GLY c 220 O3D DGD c 516 1.30 REMARK 500 CA SER c 226 O5E DGD c 516 1.37 REMARK 500 CE1 PHE h 41 O1D CLA h 101 1.37 REMARK 500 O LYS c 215 C5B MGE c 502 1.38 REMARK 500 O VAL c 225 C6E DGD c 516 1.38 REMARK 500 CH2 TRP k 39 O1A CLA k 501 1.46 REMARK 500 CD1 TRP c 223 C8B MGE c 502 1.49 REMARK 500 CH2 TRP k 39 CGA CLA k 501 1.51 REMARK 500 O GLY A 32 CG MET A 86 1.58 REMARK 500 O SER b 388 OE1 GLN b 394 1.66 REMARK 500 O ALA l 28 OG SER l 32 1.66 REMARK 500 SD MET c 342 CE MET c 356 1.74 REMARK 500 O LEU i 24 OD1 ASP i 27 1.77 REMARK 500 OD1 ASN c 39 CBB CLA c 510 1.81 REMARK 500 C SER c 226 O5E DGD c 516 1.84 REMARK 500 O LEU m 25 CG2 THR m 29 1.85 REMARK 500 O ARG A 66 CE2 PHE a 255 1.89 REMARK 500 NE1 TRP c 223 C8B MGE c 502 1.90 REMARK 500 O ASP c 205 CG1 ILE c 209 1.94 REMARK 500 O LYS c 215 C6B MGE c 502 1.96 REMARK 500 OD2 ASP b 125 OG1 THR b 128 1.99 REMARK 500 O ALA a 318 ND2 ASN a 322 2.01 REMARK 500 CB GLN A 33 O TYR A 84 2.02 REMARK 500 CD2 LEU B 37 CG LEU b 218 2.02 REMARK 500 OD2 ASP b 380 OE2 GLU d 344 2.05 REMARK 500 CE MET a 293 CB ASN a 298 2.06 REMARK 500 O ARG A 66 CZ PHE a 255 2.08 REMARK 500 O VAL c 225 O5E DGD c 516 2.09 REMARK 500 CD1 PHE h 41 O1D CLA h 101 2.16 REMARK 500 ND1 HIS b 100 C4 CLA b 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU a 297 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU d 267 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO k 26 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU k 31 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO y 17 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 33 -148.94 -102.24 REMARK 500 ALA A 34 102.32 -163.48 REMARK 500 ASN A 40 72.37 47.54 REMARK 500 GLN A 45 -80.44 -66.94 REMARK 500 GLU A 46 -153.06 -126.42 REMARK 500 ARG A 87 -0.54 63.53 REMARK 500 TRP B 26 -176.98 -68.55 REMARK 500 ASN a 76 -167.16 -127.74 REMARK 500 LEU a 174 59.89 -95.54 REMARK 500 ILE a 224 -61.23 -99.69 REMARK 500 TYR a 254 -159.20 -91.96 REMARK 500 PHE a 255 104.27 67.12 REMARK 500 ARG a 257 -155.26 -88.03 REMARK 500 THR a 316 -156.22 -132.59 REMARK 500 THR b 44 56.84 -97.03 REMARK 500 PRO b 47 45.60 -87.87 REMARK 500 ASP b 49 86.27 -157.74 REMARK 500 THR b 84 22.86 47.81 REMARK 500 ASP b 313 38.23 -99.17 REMARK 500 LYS b 321 70.60 -103.19 REMARK 500 PHE b 383 -70.83 -64.42 REMARK 500 ARG b 384 -58.71 -123.91 REMARK 500 ARG b 385 38.19 -140.93 REMARK 500 GLU b 387 105.53 -55.21 REMARK 500 TYR b 390 37.37 -99.36 REMARK 500 THR b 436 -8.09 72.53 REMARK 500 PHE b 475 52.85 -98.11 REMARK 500 VAL b 491 -154.27 -104.24 REMARK 500 TRP b 493 -55.61 -122.71 REMARK 500 LEU d 135 -61.36 -94.11 REMARK 500 THR d 221 44.57 -93.51 REMARK 500 ASP d 225 -80.30 -69.72 REMARK 500 SER d 295 68.22 -105.67 REMARK 500 ASN d 350 51.30 -93.75 REMARK 500 ARG e 61 38.16 -99.92 REMARK 500 ARG f 19 31.51 -74.41 REMARK 500 PHE f 42 56.60 -98.51 REMARK 500 LEU h 11 59.60 -102.52 REMARK 500 ASN h 15 65.96 -100.29 REMARK 500 LEU h 53 91.65 -165.70 REMARK 500 LEU i 24 -73.19 -76.65 REMARK 500 PRO l 3 45.32 -91.76 REMARK 500 PRO l 5 87.21 -55.47 REMARK 500 ASN l 6 -23.39 -157.15 REMARK 500 ARG l 7 80.69 -56.03 REMARK 500 GLN m 32 2.52 -160.08 REMARK 500 PHE t 23 41.04 -103.16 REMARK 500 SER c 30 -91.73 48.78 REMARK 500 ALA c 34 88.32 -61.51 REMARK 500 TRP c 35 -8.09 72.76 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SQD a 401 REMARK 610 CLA a 403 REMARK 610 DGD a 406 REMARK 610 CLA b 612 REMARK 610 CLA b 613 REMARK 610 CLA b 615 REMARK 610 MGE b 620 REMARK 610 CLA d 406 REMARK 610 CLA d 407 REMARK 610 MGE f 101 REMARK 610 CLA h 101 REMARK 610 HTG h 102 REMARK 610 DGD h 104 REMARK 610 SQD l 101 REMARK 610 CLA c 506 REMARK 610 CLA c 507 REMARK 610 CLA c 508 REMARK 610 CLA c 509 REMARK 610 CLA c 510 REMARK 610 CLA c 512 REMARK 610 CLA c 513 REMARK 610 DGD c 516 REMARK 610 DGD c 517 REMARK 610 CLA k 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 d 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS d 214 NE2 REMARK 620 2 GLU d 241 OE2 132.2 REMARK 620 3 HIS d 268 NE2 80.0 57.2 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30909 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PSII INTERMEDIATE PSB28-PSII COMPLEX DBREF 7DXH A 1 116 UNP Q8DLJ8 PSB28_THEEB 1 116 DBREF 7DXH B 1 56 UNP Q8DMP8 Q8DMP8_THEEB 1 56 DBREF 7DXH a 1 360 UNP P51765 PSBA_THEVL 1 360 DBREF 7DXH b 2 506 UNP D0VWR1 PSBB_THEVL 1 505 DBREF 7DXH d 11 352 UNP D0VWR8 PSBD_THEVL 1 342 DBREF 7DXH e 1 84 UNP P12238 PSBE_THEVL 1 84 DBREF 7DXH f 1 45 UNP P12239 PSBF_THEVL 1 45 DBREF 7DXH h 2 66 UNP P19052 PSBH_THEVL 1 65 DBREF 7DXH i 1 38 UNP P12240 PSBI_THEVL 1 38 DBREF 7DXH l 1 37 UNP P12241 PSBL_THEVL 1 37 DBREF 7DXH m 1 36 UNP P12312 PSBM_THEVL 1 36 DBREF 7DXH t 1 32 UNP P12313 PSBT_THEVL 1 32 DBREF 7DXH x 2 41 UNP D0VWR4 PSBX_THEVL 1 40 DBREF 7DXH c 23 473 UNP D0VWR7 PSBC_THEVL 1 451 DBREF 7DXH k 1 46 UNP Q9F1K9 PSBK_THEEB 1 46 DBREF 7DXH z 1 62 UNP D0VWR5 PSBZ_THEVL 1 62 DBREF 7DXH y 1 30 UNP D0VWR3 YCF12_THEVL 1 30 DBREF 7DXH C 29 51 PDB 7DXH 7DXH 29 51 SEQRES 1 A 116 MET GLY ALA MET ALA GLU ILE GLN PHE ILE ARG GLY ILE SEQRES 2 A 116 ASN GLU GLU VAL VAL PRO ASP VAL ARG LEU THR ARG ALA SEQRES 3 A 116 ARG ASP GLY SER SER GLY GLN ALA MET PHE TYR PHE ASP SEQRES 4 A 116 ASN PRO LYS ILE VAL GLN GLU GLY ASN LEU GLU VAL THR SEQRES 5 A 116 GLY MET TYR MET VAL ASP GLU GLU GLY GLU ILE VAL THR SEQRES 6 A 116 ARG ASP VAL ASN ALA LYS PHE ILE ASN GLY GLN PRO VAL SEQRES 7 A 116 ALA ILE GLU ALA THR TYR THR MET ARG SER PRO GLN GLU SEQRES 8 A 116 TRP ASP ARG PHE ILE ARG PHE MET ASP ARG TYR ALA ALA SEQRES 9 A 116 SER HIS GLY LEU GLY PHE GLN LYS SER GLU ASN SER SEQRES 1 B 56 MET ARG TYR THR THR ASP GLU GLY GLY ARG LEU ASN ASN SEQRES 2 B 56 PHE ALA ILE GLU PRO LYS VAL TYR GLN ALA GLN PRO TRP SEQRES 3 B 56 THR PRO GLN GLN LYS VAL ARG ALA ALA LEU LEU VAL GLY SEQRES 4 B 56 GLY GLY LEU LEU LEU VAL ALA GLY LEU VAL ALA ILE ALA SEQRES 5 B 56 VAL GLY VAL SER SEQRES 1 a 360 MET THR THR THR LEU GLN ARG ARG GLU SER ALA ASN LEU SEQRES 2 a 360 TRP GLU ARG PHE CYS ASN TRP VAL THR SER THR ASP ASN SEQRES 3 a 360 ARG LEU TYR VAL GLY TRP PHE GLY VAL ILE MET ILE PRO SEQRES 4 a 360 THR LEU LEU ALA ALA THR ILE CYS PHE VAL ILE ALA PHE SEQRES 5 a 360 ILE ALA ALA PRO PRO VAL ASP ILE ASP GLY ILE ARG GLU SEQRES 6 a 360 PRO VAL SER GLY SER LEU LEU TYR GLY ASN ASN ILE ILE SEQRES 7 a 360 THR GLY ALA VAL VAL PRO SER SER ASN ALA ILE GLY LEU SEQRES 8 a 360 HIS PHE TYR PRO ILE TRP GLU ALA ALA SER LEU ASP GLU SEQRES 9 a 360 TRP LEU TYR ASN GLY GLY PRO TYR GLN LEU ILE ILE PHE SEQRES 10 a 360 HIS PHE LEU LEU GLY ALA SER CYS TYR MET GLY ARG GLN SEQRES 11 a 360 TRP GLU LEU SER TYR ARG LEU GLY MET ARG PRO TRP ILE SEQRES 12 a 360 CYS VAL ALA TYR SER ALA PRO LEU ALA SER ALA PHE ALA SEQRES 13 a 360 VAL PHE LEU ILE TYR PRO ILE GLY GLN GLY SER PHE SER SEQRES 14 a 360 ASP GLY MET PRO LEU GLY ILE SER GLY THR PHE ASN PHE SEQRES 15 a 360 MET ILE VAL PHE GLN ALA GLU HIS ASN ILE LEU MET HIS SEQRES 16 a 360 PRO PHE HIS GLN LEU GLY VAL ALA GLY VAL PHE GLY GLY SEQRES 17 a 360 ALA LEU PHE CYS ALA MET HIS GLY SER LEU VAL THR SER SEQRES 18 a 360 SER LEU ILE ARG GLU THR THR GLU THR GLU SER ALA ASN SEQRES 19 a 360 TYR GLY TYR LYS PHE GLY GLN GLU GLU GLU THR TYR ASN SEQRES 20 a 360 ILE VAL ALA ALA HIS GLY TYR PHE GLY ARG LEU ILE PHE SEQRES 21 a 360 GLN TYR ALA SER PHE ASN ASN SER ARG SER LEU HIS PHE SEQRES 22 a 360 PHE LEU ALA ALA TRP ARG VAL VAL GLY VAL TRP PHE ALA SEQRES 23 a 360 ALA LEU GLY ILE SER THR MET ALA PHE ASN LEU ASN GLY SEQRES 24 a 360 PHE ASN PHE ASN HIS SER VAL ILE ASP ALA LYS GLY ASN SEQRES 25 a 360 VAL ILE ASN THR TRP ALA ASP ILE ILE ASN ARG ALA ASN SEQRES 26 a 360 LEU GLY MET GLU VAL MET HIS GLU ARG ASN ALA HIS ASN SEQRES 27 a 360 PHE PRO LEU ASP LEU ALA SER ALA GLU SER ALA PRO VAL SEQRES 28 a 360 ALA MET ILE ALA PRO SER ILE ASN GLY SEQRES 1 b 505 GLY LEU PRO TRP TYR ARG VAL HIS THR VAL LEU ILE ASN SEQRES 2 b 505 ASP PRO GLY ARG LEU ILE ALA ALA HIS LEU MET HIS THR SEQRES 3 b 505 ALA LEU VAL ALA GLY TRP ALA GLY SER MET ALA LEU TYR SEQRES 4 b 505 GLU LEU ALA THR PHE ASP PRO SER ASP PRO VAL LEU ASN SEQRES 5 b 505 PRO MET TRP ARG GLN GLY MET PHE VAL LEU PRO PHE MET SEQRES 6 b 505 ALA ARG LEU GLY VAL THR GLY SER TRP SER GLY TRP SER SEQRES 7 b 505 ILE THR GLY GLU THR GLY ILE ASP PRO GLY PHE TRP SER SEQRES 8 b 505 PHE GLU GLY VAL ALA LEU ALA HIS ILE VAL LEU SER GLY SEQRES 9 b 505 LEU LEU PHE LEU ALA ALA CYS TRP HIS TRP VAL TYR TRP SEQRES 10 b 505 ASP LEU GLU LEU PHE ARG ASP PRO ARG THR GLY GLU PRO SEQRES 11 b 505 ALA LEU ASP LEU PRO LYS MET PHE GLY ILE HIS LEU PHE SEQRES 12 b 505 LEU ALA GLY LEU LEU CYS PHE GLY PHE GLY ALA PHE HIS SEQRES 13 b 505 LEU THR GLY LEU PHE GLY PRO GLY MET TRP VAL SER ASP SEQRES 14 b 505 PRO TYR GLY LEU THR GLY SER VAL GLN PRO VAL ALA PRO SEQRES 15 b 505 GLU TRP GLY PRO ASP GLY PHE ASN PRO TYR ASN PRO GLY SEQRES 16 b 505 GLY VAL VAL ALA HIS HIS ILE ALA ALA GLY ILE VAL GLY SEQRES 17 b 505 ILE ILE ALA GLY LEU PHE HIS ILE LEU VAL ARG PRO PRO SEQRES 18 b 505 GLN ARG LEU TYR LYS ALA LEU ARG MET GLY ASN ILE GLU SEQRES 19 b 505 THR VAL LEU SER SER SER ILE ALA ALA VAL PHE PHE ALA SEQRES 20 b 505 ALA PHE VAL VAL ALA GLY THR MET TRP TYR GLY SER ALA SEQRES 21 b 505 THR THR PRO ILE GLU LEU PHE GLY PRO THR ARG TYR GLN SEQRES 22 b 505 TRP ASP SER SER TYR PHE GLN GLN GLU ILE ASN ARG ARG SEQRES 23 b 505 VAL GLN ALA SER LEU ALA SER GLY ALA THR LEU GLU GLU SEQRES 24 b 505 ALA TRP SER ALA ILE PRO GLU LYS LEU ALA PHE TYR ASP SEQRES 25 b 505 TYR ILE GLY ASN ASN PRO ALA LYS GLY GLY LEU PHE ARG SEQRES 26 b 505 THR GLY PRO MET ASN LYS GLY ASP GLY ILE ALA GLN ALA SEQRES 27 b 505 TRP LYS GLY HIS ALA VAL PHE ARG ASN LYS GLU GLY GLU SEQRES 28 b 505 GLU LEU PHE VAL ARG ARG MET PRO ALA PHE PHE GLU SER SEQRES 29 b 505 PHE PRO VAL ILE LEU THR ASP LYS ASN GLY VAL VAL LYS SEQRES 30 b 505 ALA ASP ILE PRO PHE ARG ARG ALA GLU SER LYS TYR SER SEQRES 31 b 505 PHE GLU GLN GLN GLY VAL THR VAL SER PHE TYR GLY GLY SEQRES 32 b 505 GLU LEU ASN GLY GLN THR PHE THR ASP PRO PRO THR VAL SEQRES 33 b 505 LYS SER TYR ALA ARG LYS ALA ILE PHE GLY GLU ILE PHE SEQRES 34 b 505 GLU PHE ASP THR GLU THR LEU ASN SER ASP GLY ILE PHE SEQRES 35 b 505 ARG THR SER PRO ARG GLY TRP PHE THR PHE ALA HIS ALA SEQRES 36 b 505 VAL PHE ALA LEU LEU PHE PHE PHE GLY HIS ILE TRP HIS SEQRES 37 b 505 GLY ALA ARG THR LEU PHE ARG ASP VAL PHE SER GLY ILE SEQRES 38 b 505 ASP PRO GLU LEU SER PRO GLU GLN VAL GLU TRP GLY PHE SEQRES 39 b 505 TYR GLN LYS VAL GLY ASP VAL THR THR ARG LYS SEQRES 1 d 342 GLU ARG GLY TRP PHE ASP ILE LEU ASP ASP TRP LEU LYS SEQRES 2 d 342 ARG ASP ARG PHE VAL PHE VAL GLY TRP SER GLY ILE LEU SEQRES 3 d 342 LEU PHE PRO CYS ALA TYR LEU ALA LEU GLY GLY TRP LEU SEQRES 4 d 342 THR GLY THR THR PHE VAL THR SER TRP TYR THR HIS GLY SEQRES 5 d 342 LEU ALA SER SER TYR LEU GLU GLY CYS ASN PHE LEU THR SEQRES 6 d 342 VAL ALA VAL SER THR PRO ALA ASN SER MET GLY HIS SER SEQRES 7 d 342 LEU LEU LEU LEU TRP GLY PRO GLU ALA GLN GLY ASP PHE SEQRES 8 d 342 THR ARG TRP CYS GLN LEU GLY GLY LEU TRP THR PHE ILE SEQRES 9 d 342 ALA LEU HIS GLY ALA PHE GLY LEU ILE GLY PHE MET LEU SEQRES 10 d 342 ARG GLN PHE GLU ILE ALA ARG LEU VAL GLY VAL ARG PRO SEQRES 11 d 342 TYR ASN ALA ILE ALA PHE SER ALA PRO ILE ALA VAL PHE SEQRES 12 d 342 VAL SER VAL PHE LEU ILE TYR PRO LEU GLY GLN SER SER SEQRES 13 d 342 TRP PHE PHE ALA PRO SER PHE GLY VAL ALA ALA ILE PHE SEQRES 14 d 342 ARG PHE LEU LEU PHE PHE GLN GLY PHE HIS ASN TRP THR SEQRES 15 d 342 LEU ASN PRO PHE HIS MET MET GLY VAL ALA GLY VAL LEU SEQRES 16 d 342 GLY GLY ALA LEU LEU CYS ALA ILE HIS GLY ALA THR VAL SEQRES 17 d 342 GLU ASN THR LEU PHE GLN ASP GLY GLU GLY ALA SER THR SEQRES 18 d 342 PHE ARG ALA PHE ASN PRO THR GLN ALA GLU GLU THR TYR SEQRES 19 d 342 SER MET VAL THR ALA ASN ARG PHE TRP SER GLN ILE PHE SEQRES 20 d 342 GLY ILE ALA PHE SER ASN LYS ARG TRP LEU HIS PHE PHE SEQRES 21 d 342 MET LEU PHE VAL PRO VAL THR GLY LEU TRP MET SER ALA SEQRES 22 d 342 ILE GLY VAL VAL GLY LEU ALA LEU ASN LEU ARG SER TYR SEQRES 23 d 342 ASP PHE ILE SER GLN GLU ILE ARG ALA ALA GLU ASP PRO SEQRES 24 d 342 GLU PHE GLU THR PHE TYR THR LYS ASN LEU LEU LEU ASN SEQRES 25 d 342 GLU GLY ILE ARG ALA TRP MET ALA PRO GLN ASP GLN PRO SEQRES 26 d 342 HIS GLU ASN PHE VAL PHE PRO GLU GLU VAL LEU PRO ARG SEQRES 27 d 342 GLY ASN ALA LEU SEQRES 1 e 84 MET ALA GLY THR THR GLY GLU ARG PRO PHE SER ASP ILE SEQRES 2 e 84 ILE THR SER VAL ARG TYR TRP VAL ILE HIS SER ILE THR SEQRES 3 e 84 ILE PRO ALA LEU PHE ILE ALA GLY TRP LEU PHE VAL SER SEQRES 4 e 84 THR GLY LEU ALA TYR ASP VAL PHE GLY THR PRO ARG PRO SEQRES 5 e 84 ASP SER TYR TYR ALA GLN GLU GLN ARG SER ILE PRO LEU SEQRES 6 e 84 VAL THR ASP ARG PHE GLU ALA LYS GLN GLN VAL GLU THR SEQRES 7 e 84 PHE LEU GLU GLN LEU LYS SEQRES 1 f 45 MET THR SER ASN THR PRO ASN GLN GLU PRO VAL SER TYR SEQRES 2 f 45 PRO ILE PHE THR VAL ARG TRP VAL ALA VAL HIS THR LEU SEQRES 3 f 45 ALA VAL PRO THR ILE PHE PHE LEU GLY ALA ILE ALA ALA SEQRES 4 f 45 MET GLN PHE ILE GLN ARG SEQRES 1 h 65 ALA ARG ARG THR TRP LEU GLY ASP ILE LEU ARG PRO LEU SEQRES 2 h 65 ASN SER GLU TYR GLY LYS VAL ALA PRO GLY TRP GLY THR SEQRES 3 h 65 THR PRO LEU MET ALA VAL PHE MET GLY LEU PHE LEU VAL SEQRES 4 h 65 PHE LEU LEU ILE ILE LEU GLU ILE TYR ASN SER THR LEU SEQRES 5 h 65 ILE LEU ASP GLY VAL ASN VAL SER TRP LYS ALA LEU GLY SEQRES 1 i 38 MET GLU THR LEU LYS ILE THR VAL TYR ILE VAL VAL THR SEQRES 2 i 38 PHE PHE VAL LEU LEU PHE VAL PHE GLY PHE LEU SER GLY SEQRES 3 i 38 ASP PRO ALA ARG ASN PRO LYS ARG LYS ASP LEU GLU SEQRES 1 l 37 MET GLU PRO ASN PRO ASN ARG GLN PRO VAL GLU LEU ASN SEQRES 2 l 37 ARG THR SER LEU TYR LEU GLY LEU LEU LEU ILE LEU VAL SEQRES 3 l 37 LEU ALA LEU LEU PHE SER SER TYR PHE PHE ASN SEQRES 1 m 36 MET GLU VAL ASN GLN LEU GLY PHE ILE ALA THR ALA LEU SEQRES 2 m 36 PHE VAL LEU VAL PRO SER VAL PHE LEU ILE ILE LEU TYR SEQRES 3 m 36 VAL GLN THR GLU SER GLN GLN LYS SER SER SEQRES 1 t 32 MET GLU THR ILE THR TYR VAL PHE ILE PHE ALA CYS ILE SEQRES 2 t 32 ILE ALA LEU PHE PHE PHE ALA ILE PHE PHE ARG GLU PRO SEQRES 3 t 32 PRO ARG ILE THR LYS LYS SEQRES 1 x 40 THR ILE THR PRO SER LEU LYS GLY PHE PHE ILE GLY LEU SEQRES 2 x 40 LEU SER GLY ALA VAL VAL LEU GLY LEU THR PHE ALA VAL SEQRES 3 x 40 LEU ILE ALA ILE SER GLN ILE ASP LYS VAL GLN ARG SER SEQRES 4 x 40 LEU SEQRES 1 c 451 ALA THR ASN ARG ASP GLN GLU SER SER GLY PHE ALA TRP SEQRES 2 c 451 TRP ALA GLY ASN ALA ARG LEU ILE ASN LEU SER GLY LYS SEQRES 3 c 451 LEU LEU GLY ALA HIS VAL ALA HIS ALA GLY LEU ILE VAL SEQRES 4 c 451 PHE TRP ALA GLY ALA MET THR LEU PHE GLU LEU ALA HIS SEQRES 5 c 451 PHE ILE PRO GLU LYS PRO MET TYR GLU GLN GLY LEU ILE SEQRES 6 c 451 LEU ILE PRO HIS ILE ALA THR LEU GLY TRP GLY VAL GLY SEQRES 7 c 451 PRO GLY GLY GLU VAL VAL ASP THR PHE PRO PHE PHE VAL SEQRES 8 c 451 VAL GLY VAL VAL HIS LEU ILE SER SER ALA VAL LEU GLY SEQRES 9 c 451 PHE GLY GLY VAL TYR HIS ALA ILE ARG GLY PRO GLU THR SEQRES 10 c 451 LEU GLU GLU TYR SER SER PHE PHE GLY TYR ASP TRP LYS SEQRES 11 c 451 ASP LYS ASN LYS MET THR THR ILE LEU GLY PHE HIS LEU SEQRES 12 c 451 ILE VAL LEU GLY ILE GLY ALA LEU LEU LEU VAL ALA LYS SEQRES 13 c 451 ALA MET PHE PHE GLY GLY LEU TYR ASP THR TRP ALA PRO SEQRES 14 c 451 GLY GLY GLY ASP VAL ARG VAL ILE THR ASN PRO THR LEU SEQRES 15 c 451 ASP PRO ARG VAL ILE PHE GLY TYR LEU LEU LYS SER PRO SEQRES 16 c 451 PHE GLY GLY GLU GLY TRP ILE VAL SER VAL ASN ASN LEU SEQRES 17 c 451 GLU ASP VAL VAL GLY GLY HIS ILE TRP ILE GLY LEU ILE SEQRES 18 c 451 CYS ILE ALA GLY GLY ILE TRP HIS ILE LEU THR THR PRO SEQRES 19 c 451 PHE GLY TRP ALA ARG ARG ALA PHE ILE TRP SER GLY GLU SEQRES 20 c 451 ALA TYR LEU SER TYR SER LEU GLY ALA LEU SER MET MET SEQRES 21 c 451 GLY PHE ILE ALA THR CYS PHE VAL TRP PHE ASN ASN THR SEQRES 22 c 451 VAL TYR PRO SER GLU PHE TYR GLY PRO THR GLY PRO GLU SEQRES 23 c 451 ALA SER GLN ALA GLN ALA MET THR PHE LEU ILE ARG ASP SEQRES 24 c 451 GLN LYS LEU GLY ALA ASN VAL GLY SER ALA GLN GLY PRO SEQRES 25 c 451 THR GLY LEU GLY LYS TYR LEU MET ARG SER PRO THR GLY SEQRES 26 c 451 GLU ILE ILE PHE GLY GLY GLU THR MET ARG PHE TRP ASP SEQRES 27 c 451 PHE ARG GLY PRO TRP LEU GLU PRO LEU ARG GLY PRO ASN SEQRES 28 c 451 GLY LEU ASP LEU ASN LYS ILE LYS ASN ASP ILE GLN PRO SEQRES 29 c 451 TRP GLN GLU ARG ARG ALA ALA GLU TYR MET THR HIS ALA SEQRES 30 c 451 PRO LEU GLY SER LEU ASN SER VAL GLY GLY VAL ALA THR SEQRES 31 c 451 GLU ILE ASN SER VAL ASN PHE VAL SER PRO ARG SER TRP SEQRES 32 c 451 LEU ALA THR SER HIS PHE VAL LEU ALA PHE PHE PHE LEU SEQRES 33 c 451 VAL GLY HIS LEU TRP HIS ALA GLY ARG ALA ARG ALA ALA SEQRES 34 c 451 ALA ALA GLY PHE GLU LYS GLY ILE ASP ARG GLU SER GLU SEQRES 35 c 451 PRO VAL LEU SER MET PRO SER LEU ASP SEQRES 1 k 46 MET ILE ASP ALA LEU VAL LEU VAL ALA LYS LEU PRO GLU SEQRES 2 k 46 ALA TYR ALA ILE PHE ASP PRO LEU VAL ASP VAL LEU PRO SEQRES 3 k 46 VAL ILE PRO VAL LEU PHE LEU ALA LEU ALA PHE VAL TRP SEQRES 4 k 46 GLN ALA ALA VAL GLY PHE ARG SEQRES 1 z 62 MET THR ILE LEU PHE GLN LEU ALA LEU ALA ALA LEU VAL SEQRES 2 z 62 ILE LEU SER PHE VAL MET VAL ILE GLY VAL PRO VAL ALA SEQRES 3 z 62 TYR ALA SER PRO GLN ASP TRP ASP ARG SER LYS GLN LEU SEQRES 4 z 62 ILE PHE LEU GLY SER GLY LEU TRP ILE ALA LEU VAL LEU SEQRES 5 z 62 VAL VAL GLY VAL LEU ASN PHE PHE VAL VAL SEQRES 1 y 30 GLU VAL ILE ALA GLN LEU THR MET ILE ALA MET ILE GLY SEQRES 2 y 30 ILE ALA GLY PRO MET ILE ILE PHE LEU LEU ALA VAL ARG SEQRES 3 y 30 ARG GLY ASN LEU SEQRES 1 C 23 ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA SEQRES 2 C 23 ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA HET MGE B 101 48 HET SQD a 401 26 HET CLA a 402 65 HET CLA a 403 51 HET BCR a 404 40 HET CL a 405 1 HET DGD a 406 57 HET CLA a 407 65 HET CLA b 601 65 HET CLA b 602 65 HET CLA b 603 65 HET CLA b 604 65 HET CLA b 605 65 HET CLA b 606 65 HET CLA b 607 65 HET CLA b 608 65 HET CLA b 609 65 HET CLA b 610 65 HET CLA b 611 65 HET CLA b 612 54 HET CLA b 613 52 HET CLA b 614 65 HET CLA b 615 46 HET BCR b 616 40 HET BCR b 617 40 HET BCR b 618 40 HET MGE b 619 48 HET MGE b 620 41 HET PHO d 401 64 HET CLA d 402 65 HET PHO d 403 64 HET LMT d 404 35 HET FE2 d 405 1 HET CLA d 406 61 HET CLA d 407 50 HET PQ9 d 408 45 HET BCR d 409 40 HET MGE d 410 48 HET UNL d 411 17 HET UNL d 412 36 HET HEM e 101 43 HET MGE f 101 47 HET CLA h 101 41 HET HTG h 102 16 HET BCR h 103 40 HET DGD h 104 54 HET SQD l 101 47 HET LMT m 101 35 HET MGE m 102 48 HET LMT t 301 35 HET CL c 501 1 HET MGE c 502 48 HET CLA c 503 65 HET CLA c 504 65 HET CLA c 505 65 HET CLA c 506 46 HET CLA c 507 51 HET CLA c 508 46 HET CLA c 509 63 HET CLA c 510 46 HET CLA c 511 65 HET CLA c 512 51 HET CLA c 513 50 HET BCR c 514 40 HET BCR c 515 40 HET DGD c 516 53 HET DGD c 517 47 HET CLA k 501 46 HET BCR z 101 40 HETNAM MGE (1S)-2-(ALPHA-L-ALLOPYRANOSYLOXY)-1-[(TRIDECANOYLOXY) HETNAM 2 MGE METHYL]ETHYL PALMITATE HETNAM SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D- HETNAM 2 SQD GLUCOPYRANOSYL]-SN-GLYCEROL HETNAM CLA CHLOROPHYLL A HETNAM BCR BETA-CAROTENE HETNAM CL CHLORIDE ION HETNAM DGD DIGALACTOSYL DIACYL GLYCEROL (DGDG) HETNAM PHO PHEOPHYTIN A HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETNAM FE2 FE (II) ION HETNAM PQ9 5-[(2E,6E,10E,14E,18E,22E)-3,7,11,15,19,23,27- HETNAM 2 PQ9 HEPTAMETHYLOCTACOSA-2,6,10,14,18,22,26-HEPTAENYL]-2,3- HETNAM 3 PQ9 DIMETHYLBENZO-1,4-QUINONE HETNAM UNL UNKNOWN LIGAND HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM HTG HEPTYL 1-THIO-BETA-D-GLUCOPYRANOSIDE HETSYN MGE MONOGALACTOSYL-DIACYLGLYCEROL HETSYN SQD SULFOQUINOVOSYLDIACYLGLYCEROL HETSYN HEM HEME HETSYN HTG HEPTYL 1-THIOHEXOPYRANOSIDE; HEPTYL 1-THIO-BETA-D- HETSYN 2 HTG GLUCOSIDE; HEPTYL 1-THIO-D-GLUCOSIDE; HEPTYL 1-THIO- HETSYN 3 HTG GLUCOSIDE FORMUL 19 MGE 7(C38 H72 O10) FORMUL 20 SQD 2(C41 H78 O12 S) FORMUL 21 CLA 34(C55 H72 MG N4 O5) FORMUL 23 BCR 9(C40 H56) FORMUL 24 CL 2(CL 1-) FORMUL 25 DGD 4(C51 H96 O15) FORMUL 47 PHO 2(C55 H74 N4 O5) FORMUL 50 LMT 3(C24 H46 O11) FORMUL 51 FE2 FE 2+ FORMUL 54 PQ9 C43 H64 O2 FORMUL 59 HEM C34 H32 FE N4 O4 FORMUL 62 HTG C13 H26 O5 S HELIX 1 AA1 PRO A 41 GLU A 46 1 6 HELIX 2 AA2 SER A 88 HIS A 106 1 19 HELIX 3 AA3 THR B 27 VAL B 55 1 29 HELIX 4 AA4 LEU a 13 SER a 23 1 11 HELIX 5 AA5 GLY a 31 ALA a 54 1 24 HELIX 6 AA6 SER a 70 GLY a 74 5 5 HELIX 7 AA7 SER a 101 ASN a 108 1 8 HELIX 8 AA8 GLY a 109 GLY a 138 1 30 HELIX 9 AA9 TRP a 142 LEU a 159 1 18 HELIX 10 AB1 LEU a 159 GLY a 166 1 8 HELIX 11 AB2 SER a 167 GLY a 171 5 5 HELIX 12 AB3 GLY a 175 ASN a 191 1 17 HELIX 13 AB4 ILE a 192 MET a 194 5 3 HELIX 14 AB5 HIS a 195 SER a 221 1 27 HELIX 15 AB6 SER a 270 ALA a 294 1 25 HELIX 16 AB7 THR a 316 HIS a 332 1 17 HELIX 17 AB8 PRO b 4 ILE b 13 5 10 HELIX 18 AB9 ASP b 15 THR b 44 1 30 HELIX 19 AC1 VAL b 62 GLY b 70 1 9 HELIX 20 AC2 SER b 92 TYR b 117 1 26 HELIX 21 AC3 ASP b 134 HIS b 157 1 24 HELIX 22 AC4 GLY b 186 ASN b 191 5 6 HELIX 23 AC5 PRO b 195 ILE b 217 1 23 HELIX 24 AC6 PRO b 222 LEU b 229 1 8 HELIX 25 AC7 ILE b 234 TYR b 258 1 25 HELIX 26 AC8 ARG b 272 SER b 277 1 6 HELIX 27 AC9 SER b 278 ALA b 293 1 16 HELIX 28 AD1 THR b 297 ALA b 304 1 8 HELIX 29 AD2 PRO b 306 TYR b 312 1 7 HELIX 30 AD3 TYR b 314 ASN b 318 5 5 HELIX 31 AD4 ASP b 413 ILE b 425 1 13 HELIX 32 AD5 SER b 446 PHE b 475 1 30 HELIX 33 AD6 PHE b 475 GLY b 481 1 7 HELIX 34 AD7 TRP d 14 LYS d 23 1 10 HELIX 35 AD8 SER d 33 VAL d 55 1 23 HELIX 36 AD9 ALA d 82 GLY d 86 5 5 HELIX 37 AE1 ASP d 100 LEU d 107 1 8 HELIX 38 AE2 GLY d 108 GLY d 137 1 30 HELIX 39 AE3 PRO d 140 PHE d 146 1 7 HELIX 40 AE4 PHE d 146 LEU d 158 1 13 HELIX 41 AE5 LEU d 158 GLN d 164 1 7 HELIX 42 AE6 VAL d 175 ASN d 190 1 16 HELIX 43 AE7 TRP d 191 LEU d 193 5 3 HELIX 44 AE8 ASN d 194 GLU d 219 1 26 HELIX 45 AE9 PHE d 235 GLN d 239 5 5 HELIX 46 AF1 SER d 245 ILE d 256 1 12 HELIX 47 AF2 ASN d 263 LEU d 291 1 29 HELIX 48 AF3 PHE d 298 ASP d 308 1 11 HELIX 49 AF4 THR d 313 GLN d 334 1 22 HELIX 50 AF5 ILE e 27 THR e 40 1 14 HELIX 51 AF6 LEU e 42 PHE e 47 1 6 HELIX 52 AF7 GLU e 71 LEU e 80 1 10 HELIX 53 AF8 TRP f 20 THR f 25 1 6 HELIX 54 AF9 ALA f 27 GLN f 41 1 15 HELIX 55 AG1 THR h 5 LEU h 11 1 7 HELIX 56 AG2 THR h 27 ASN h 50 1 24 HELIX 57 AG3 GLU i 2 SER i 25 1 24 HELIX 58 AG4 ASN l 13 ASN l 37 1 25 HELIX 59 AG5 LEU m 6 GLN m 28 1 23 HELIX 60 AG6 GLU t 2 PHE t 23 1 22 HELIX 61 AG7 THR x 4 ASP x 35 1 32 HELIX 62 AG8 GLY c 38 ILE c 43 5 6 HELIX 63 AG9 GLY c 47 HIS c 74 1 28 HELIX 64 AH1 LEU c 88 LEU c 95 1 8 HELIX 65 AH2 GLY c 100 GLU c 104 5 5 HELIX 66 AH3 THR c 108 LEU c 125 1 18 HELIX 67 AH4 PHE c 127 HIS c 132 1 6 HELIX 68 AH5 LYS c 156 PHE c 181 1 26 HELIX 69 AH6 LEU c 230 ILE c 249 1 20 HELIX 70 AH7 ILE c 249 THR c 254 1 6 HELIX 71 AH8 ALA c 270 ASN c 293 1 24 HELIX 72 AH9 PRO c 298 GLY c 303 1 6 HELIX 73 AI1 THR c 305 LEU c 324 1 20 HELIX 74 AI2 LEU c 377 ASP c 383 1 7 HELIX 75 AI3 TRP c 387 THR c 397 1 11 HELIX 76 AI4 PRO c 422 ALA c 445 1 24 HELIX 77 AI5 PHE k 18 ASP k 23 1 6 HELIX 78 AI6 PRO k 26 LEU k 31 1 6 HELIX 79 AI7 LEU k 31 GLN k 40 1 10 HELIX 80 AI8 ILE z 3 LEU z 9 1 7 HELIX 81 AI9 LEU z 9 ILE z 14 1 6 HELIX 82 AJ1 PHE z 17 GLY z 22 1 6 HELIX 83 AJ2 LEU z 46 VAL z 56 1 11 HELIX 84 AJ3 LEU z 57 PHE z 59 5 3 HELIX 85 AJ4 MET y 11 LEU y 23 1 13 HELIX 86 AJ5 ALA C 32 ALA C 51 1 20 SHEET 1 AA1 6 ASP A 20 LEU A 23 0 SHEET 2 AA1 6 ALA A 34 ASP A 39 -1 O TYR A 37 N ASP A 20 SHEET 3 AA1 6 GLN A 76 TYR A 84 -1 O ALA A 82 N PHE A 36 SHEET 4 AA1 6 VAL A 68 ILE A 73 -1 N LYS A 71 O ALA A 79 SHEET 5 AA1 6 VAL a 249 HIS a 252 -1 O ALA a 250 N PHE A 72 SHEET 6 AA1 6 ARG a 225 THR a 227 -1 N ARG a 225 O ALA a 251 SHEET 1 AA2 2 MET A 54 VAL A 57 0 SHEET 2 AA2 2 GLU A 62 THR A 65 -1 O THR A 65 N MET A 54 SHEET 1 AA3 2 TYR B 21 GLN B 22 0 SHEET 2 AA3 2 LYS h 20 VAL h 21 1 O VAL h 21 N TYR B 21 SHEET 1 AA4 2 ILE a 307 ASP a 308 0 SHEET 2 AA4 2 ASN a 312 VAL a 313 -1 O ASN a 312 N ASP a 308 SHEET 1 AA5 2 MET b 166 VAL b 168 0 SHEET 2 AA5 2 SER b 177 GLN b 179 -1 O SER b 177 N VAL b 168 SHEET 1 AA6 4 GLN b 409 PHE b 411 0 SHEET 2 AA6 4 VAL b 397 TYR b 402 -1 N VAL b 399 O PHE b 411 SHEET 3 AA6 4 ILE b 336 ASN b 348 -1 N VAL b 345 O SER b 400 SHEET 4 AA6 4 ILE b 429 ASP b 433 -1 O ASP b 433 N ILE b 336 SHEET 1 AA7 3 PHE b 355 VAL b 356 0 SHEET 2 AA7 3 ILE b 369 THR b 371 -1 O THR b 371 N PHE b 355 SHEET 3 AA7 3 VAL b 377 ASP b 380 -1 O ALA b 379 N LEU b 370 SHEET 1 AA8 2 LEU c 341 ARG c 343 0 SHEET 2 AA8 2 ILE c 349 PHE c 351 -1 O ILE c 350 N MET c 342 SHEET 1 AA9 2 ARG c 370 GLY c 371 0 SHEET 2 AA9 2 GLY c 374 LEU c 375 -1 O GLY c 374 N GLY c 371 LINK NE2 HIS d 214 FE FE2 d 405 1555 1555 2.44 LINK OE2 GLU d 241 FE FE2 d 405 1555 1555 2.56 LINK NE2 HIS d 268 FE FE2 d 405 1555 1555 2.66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000