HEADER TRANSFERASE 19-JAN-21 7DXI TITLE STRUCTURE OF DROSOPHILA MELANOGASTER GLCNAC-1-PHOSPHOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FI02838P; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLCNAC-1-PHOSPHOTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: DMEL\CG8027, CG8027, CG8027-RA, CG8027, DMEL_CG8027; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS GNPTAB, GLCNAC-1-PHOSPHOTRANSFERASE, SUGAR BINDING PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.DU,J.XIAO,W.GUOPENG REVDAT 4 25-JUN-25 7DXI 1 REMARK REVDAT 3 06-NOV-24 7DXI 1 REMARK REVDAT 2 17-AUG-22 7DXI 1 JRNL REVDAT 1 02-FEB-22 7DXI 0 JRNL AUTH S.DU,G.WANG,Z.ZHANG,C.MA,N.GAO,J.XIAO JRNL TITL STRUCTURAL INSIGHTS INTO HOW GLCNAC-1-PHOSPHOTRANSFERASE JRNL TITL 2 DIRECTS LYSOSOMAL PROTEIN TRANSPORT. JRNL REF J.BIOL.CHEM. V. 298 01702 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35148990 JRNL DOI 10.1016/J.JBC.2022.101702 REMARK 2 REMARK 2 RESOLUTION. 3.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.530 REMARK 3 NUMBER OF PARTICLES : 131301 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7DXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020382. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GNPT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6029.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 GLN A 53 REMARK 465 THR A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 PHE A 57 REMARK 465 SER A 58 REMARK 465 SER A 59 REMARK 465 ASP A 86 REMARK 465 ASP A 87 REMARK 465 LYS A 88 REMARK 465 TYR A 89 REMARK 465 ASP A 90 REMARK 465 PRO A 91 REMARK 465 SER A 92 REMARK 465 ARG A 93 REMARK 465 PHE A 94 REMARK 465 ASP A 95 REMARK 465 ASP A 96 REMARK 465 TRP A 204 REMARK 465 MET A 205 REMARK 465 VAL A 206 REMARK 465 PRO A 207 REMARK 465 ASP A 208 REMARK 465 CYS A 209 REMARK 465 ALA A 210 REMARK 465 LEU A 211 REMARK 465 ASP A 212 REMARK 465 CYS A 213 REMARK 465 PRO A 214 REMARK 465 TRP A 215 REMARK 465 THR A 216 REMARK 465 TYR A 217 REMARK 465 ILE A 218 REMARK 465 GLY A 219 REMARK 465 ASP A 220 REMARK 465 GLY A 221 REMARK 465 ALA A 222 REMARK 465 CYS A 223 REMARK 465 ASP A 224 REMARK 465 ARG A 225 REMARK 465 HIS A 226 REMARK 465 CYS A 227 REMARK 465 ASN A 228 REMARK 465 ILE A 229 REMARK 465 ASP A 230 REMARK 465 ALA A 231 REMARK 465 CYS A 232 REMARK 465 GLN A 233 REMARK 465 PHE A 234 REMARK 465 ASP A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 CYS A 239 REMARK 465 SER A 240 REMARK 465 GLU A 241 REMARK 465 THR A 242 REMARK 465 GLY A 243 REMARK 465 PRO A 244 REMARK 465 ALA A 245 REMARK 465 SER A 246 REMARK 465 ASP A 247 REMARK 465 ALA A 248 REMARK 465 HIS A 249 REMARK 465 VAL A 250 REMARK 465 ILE A 251 REMARK 465 PRO A 252 REMARK 465 PRO A 253 REMARK 465 SER A 254 REMARK 465 LYS A 255 REMARK 465 GLU A 256 REMARK 465 VAL A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 VAL A 260 REMARK 465 GLN A 261 REMARK 465 PRO A 262 REMARK 465 ALA A 263 REMARK 465 ALA A 264 REMARK 465 VAL A 265 REMARK 465 PRO A 266 REMARK 465 GLN A 267 REMARK 465 SER A 268 REMARK 465 ARG A 269 REMARK 465 VAL A 270 REMARK 465 HIS A 271 REMARK 465 ARG A 272 REMARK 465 PHE A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 MET A 276 REMARK 465 GLY A 277 REMARK 465 LEU A 278 REMARK 465 GLN A 279 REMARK 465 LYS A 280 REMARK 465 LEU A 281 REMARK 465 PHE A 282 REMARK 465 ARG A 283 REMARK 465 ARG A 284 REMARK 465 SER A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 ASN A 288 REMARK 465 PHE A 289 REMARK 465 LYS A 290 REMARK 465 ASP A 291 REMARK 465 VAL A 292 REMARK 465 MET A 293 REMARK 465 ARG A 294 REMARK 465 HIS A 295 REMARK 465 ARG A 296 REMARK 465 ASN A 297 REMARK 465 VAL A 298 REMARK 465 SER A 299 REMARK 465 THR A 300 REMARK 465 LEU A 301 REMARK 465 LYS A 302 REMARK 465 GLU A 303 REMARK 465 LEU A 304 REMARK 465 ARG A 305 REMARK 465 ARG A 306 REMARK 465 ILE A 307 REMARK 465 VAL A 308 REMARK 465 GLU A 309 REMARK 465 ARG A 310 REMARK 465 PHE A 311 REMARK 465 ASN A 312 REMARK 465 LYS A 313 REMARK 465 ALA A 314 REMARK 465 LYS A 315 REMARK 465 LEU A 316 REMARK 465 MET A 317 REMARK 465 SER A 318 REMARK 465 LEU A 319 REMARK 465 ASN A 320 REMARK 465 PRO A 321 REMARK 465 GLU A 322 REMARK 465 LEU A 323 REMARK 465 GLU A 324 REMARK 465 THR A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 SER A 328 REMARK 465 GLU A 329 REMARK 465 PRO A 330 REMARK 465 GLN A 331 REMARK 465 THR A 332 REMARK 465 THR A 333 REMARK 465 GLN A 334 REMARK 465 ARG A 335 REMARK 465 HIS A 336 REMARK 465 GLY A 337 REMARK 465 LEU A 338 REMARK 465 ARG A 339 REMARK 465 LYS A 340 REMARK 465 GLU A 341 REMARK 465 ASP A 342 REMARK 465 PHE A 343 REMARK 465 LYS A 344 REMARK 465 SER A 345 REMARK 465 SER A 346 REMARK 465 ARG A 478 REMARK 465 ASN A 479 REMARK 465 LEU A 480 REMARK 465 GLY A 481 REMARK 465 MET A 482 REMARK 465 HIS A 483 REMARK 465 LEU A 484 REMARK 465 LYS A 485 REMARK 465 VAL A 486 REMARK 465 ASP A 487 REMARK 465 THR A 488 REMARK 465 VAL A 489 REMARK 465 GLU A 490 REMARK 465 HIS A 491 REMARK 465 SER A 492 REMARK 465 THR A 493 REMARK 465 LEU A 494 REMARK 465 VAL A 495 REMARK 465 TYR A 496 REMARK 465 GLU A 497 REMARK 465 ARG A 498 REMARK 465 TYR A 499 REMARK 465 GLU A 500 REMARK 465 ASP A 501 REMARK 465 SER A 502 REMARK 465 ASN A 503 REMARK 465 GLN A 611 REMARK 465 TYR A 612 REMARK 465 ARG A 613 REMARK 465 ASN A 614 REMARK 465 ARG A 615 REMARK 465 PHE A 616 REMARK 465 GLU A 617 REMARK 465 SER A 618 REMARK 465 TRP A 619 REMARK 465 ARG A 620 REMARK 465 ASP A 621 REMARK 465 PHE A 622 REMARK 465 GLN A 623 REMARK 465 ARG A 624 REMARK 465 TRP A 625 REMARK 465 LYS A 626 REMARK 465 ARG A 627 REMARK 465 ARG A 628 REMARK 465 LYS A 629 REMARK 465 ARG A 630 REMARK 465 GLU B 50 REMARK 465 GLU B 51 REMARK 465 GLY B 52 REMARK 465 GLN B 53 REMARK 465 THR B 54 REMARK 465 GLY B 55 REMARK 465 GLY B 56 REMARK 465 PHE B 57 REMARK 465 SER B 58 REMARK 465 SER B 59 REMARK 465 ASP B 86 REMARK 465 ASP B 87 REMARK 465 LYS B 88 REMARK 465 TYR B 89 REMARK 465 ASP B 90 REMARK 465 PRO B 91 REMARK 465 SER B 92 REMARK 465 ARG B 93 REMARK 465 PHE B 94 REMARK 465 ASP B 95 REMARK 465 ASP B 96 REMARK 465 TRP B 204 REMARK 465 MET B 205 REMARK 465 VAL B 206 REMARK 465 PRO B 207 REMARK 465 ASP B 208 REMARK 465 CYS B 209 REMARK 465 ALA B 210 REMARK 465 LEU B 211 REMARK 465 ASP B 212 REMARK 465 CYS B 213 REMARK 465 PRO B 214 REMARK 465 TRP B 215 REMARK 465 THR B 216 REMARK 465 TYR B 217 REMARK 465 ILE B 218 REMARK 465 GLY B 219 REMARK 465 ASP B 220 REMARK 465 GLY B 221 REMARK 465 ALA B 222 REMARK 465 CYS B 223 REMARK 465 ASP B 224 REMARK 465 ARG B 225 REMARK 465 HIS B 226 REMARK 465 CYS B 227 REMARK 465 ASN B 228 REMARK 465 ILE B 229 REMARK 465 ASP B 230 REMARK 465 ALA B 231 REMARK 465 CYS B 232 REMARK 465 GLN B 233 REMARK 465 PHE B 234 REMARK 465 ASP B 235 REMARK 465 GLY B 236 REMARK 465 GLY B 237 REMARK 465 ASP B 238 REMARK 465 CYS B 239 REMARK 465 SER B 240 REMARK 465 GLU B 241 REMARK 465 THR B 242 REMARK 465 GLY B 243 REMARK 465 PRO B 244 REMARK 465 ALA B 245 REMARK 465 SER B 246 REMARK 465 ASP B 247 REMARK 465 ALA B 248 REMARK 465 HIS B 249 REMARK 465 VAL B 250 REMARK 465 ILE B 251 REMARK 465 PRO B 252 REMARK 465 PRO B 253 REMARK 465 SER B 254 REMARK 465 LYS B 255 REMARK 465 GLU B 256 REMARK 465 VAL B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 VAL B 260 REMARK 465 GLN B 261 REMARK 465 PRO B 262 REMARK 465 ALA B 263 REMARK 465 ALA B 264 REMARK 465 VAL B 265 REMARK 465 PRO B 266 REMARK 465 GLN B 267 REMARK 465 SER B 268 REMARK 465 ARG B 269 REMARK 465 VAL B 270 REMARK 465 HIS B 271 REMARK 465 ARG B 272 REMARK 465 PHE B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 MET B 276 REMARK 465 GLY B 277 REMARK 465 LEU B 278 REMARK 465 GLN B 279 REMARK 465 LYS B 280 REMARK 465 LEU B 281 REMARK 465 PHE B 282 REMARK 465 ARG B 283 REMARK 465 ARG B 284 REMARK 465 SER B 285 REMARK 465 SER B 286 REMARK 465 ALA B 287 REMARK 465 ASN B 288 REMARK 465 PHE B 289 REMARK 465 LYS B 290 REMARK 465 ASP B 291 REMARK 465 VAL B 292 REMARK 465 MET B 293 REMARK 465 ARG B 294 REMARK 465 HIS B 295 REMARK 465 ARG B 296 REMARK 465 ASN B 297 REMARK 465 VAL B 298 REMARK 465 SER B 299 REMARK 465 THR B 300 REMARK 465 LEU B 301 REMARK 465 LYS B 302 REMARK 465 GLU B 303 REMARK 465 LEU B 304 REMARK 465 ARG B 305 REMARK 465 ARG B 306 REMARK 465 ILE B 307 REMARK 465 VAL B 308 REMARK 465 GLU B 309 REMARK 465 ARG B 310 REMARK 465 PHE B 311 REMARK 465 ASN B 312 REMARK 465 LYS B 313 REMARK 465 ALA B 314 REMARK 465 LYS B 315 REMARK 465 LEU B 316 REMARK 465 MET B 317 REMARK 465 SER B 318 REMARK 465 LEU B 319 REMARK 465 ASN B 320 REMARK 465 PRO B 321 REMARK 465 GLU B 322 REMARK 465 LEU B 323 REMARK 465 GLU B 324 REMARK 465 THR B 325 REMARK 465 SER B 326 REMARK 465 SER B 327 REMARK 465 SER B 328 REMARK 465 GLU B 329 REMARK 465 PRO B 330 REMARK 465 GLN B 331 REMARK 465 THR B 332 REMARK 465 THR B 333 REMARK 465 GLN B 334 REMARK 465 ARG B 335 REMARK 465 HIS B 336 REMARK 465 GLY B 337 REMARK 465 LEU B 338 REMARK 465 ARG B 339 REMARK 465 LYS B 340 REMARK 465 GLU B 341 REMARK 465 ASP B 342 REMARK 465 PHE B 343 REMARK 465 LYS B 344 REMARK 465 SER B 345 REMARK 465 SER B 346 REMARK 465 ARG B 478 REMARK 465 ASN B 479 REMARK 465 LEU B 480 REMARK 465 GLY B 481 REMARK 465 MET B 482 REMARK 465 HIS B 483 REMARK 465 LEU B 484 REMARK 465 LYS B 485 REMARK 465 VAL B 486 REMARK 465 ASP B 487 REMARK 465 THR B 488 REMARK 465 VAL B 489 REMARK 465 GLU B 490 REMARK 465 HIS B 491 REMARK 465 SER B 492 REMARK 465 THR B 493 REMARK 465 LEU B 494 REMARK 465 VAL B 495 REMARK 465 TYR B 496 REMARK 465 GLU B 497 REMARK 465 ARG B 498 REMARK 465 TYR B 499 REMARK 465 GLU B 500 REMARK 465 ASP B 501 REMARK 465 SER B 502 REMARK 465 ASN B 503 REMARK 465 GLN B 611 REMARK 465 TYR B 612 REMARK 465 ARG B 613 REMARK 465 ASN B 614 REMARK 465 ARG B 615 REMARK 465 PHE B 616 REMARK 465 GLU B 617 REMARK 465 SER B 618 REMARK 465 TRP B 619 REMARK 465 ARG B 620 REMARK 465 ASP B 621 REMARK 465 PHE B 622 REMARK 465 GLN B 623 REMARK 465 ARG B 624 REMARK 465 TRP B 625 REMARK 465 LYS B 626 REMARK 465 ARG B 627 REMARK 465 ARG B 628 REMARK 465 LYS B 629 REMARK 465 ARG B 630 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 439 OG1 THR B 443 1.47 REMARK 500 OD2 ASP A 439 OG1 THR A 443 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 182 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 460 C - N - CD ANGL. DEV. = -23.4 DEGREES REMARK 500 LEU A 517 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU B 182 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO B 460 C - N - CD ANGL. DEV. = -23.4 DEGREES REMARK 500 LEU B 517 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 64 -57.68 -124.77 REMARK 500 ASP A 65 71.74 60.61 REMARK 500 TRP A 70 73.93 55.37 REMARK 500 ALA A 112 31.85 -98.32 REMARK 500 ARG A 115 -1.75 60.22 REMARK 500 THR A 121 -168.24 -124.37 REMARK 500 ASP A 147 80.80 54.04 REMARK 500 PRO A 148 65.89 -67.71 REMARK 500 PRO A 152 77.34 -66.86 REMARK 500 LYS A 168 52.64 -95.78 REMARK 500 LEU A 176 127.10 -35.81 REMARK 500 ASN A 177 -73.45 -81.14 REMARK 500 ASP A 178 -40.69 -140.39 REMARK 500 ASP A 179 49.85 -97.30 REMARK 500 ALA A 184 79.56 54.01 REMARK 500 GLU A 196 -155.01 -85.23 REMARK 500 LYS A 368 -75.29 -54.75 REMARK 500 ALA A 369 4.58 -154.53 REMARK 500 PHE A 436 -12.25 72.53 REMARK 500 ILE A 456 -64.21 -120.60 REMARK 500 THR A 506 70.84 59.29 REMARK 500 LEU A 517 6.81 58.24 REMARK 500 HIS A 535 111.15 -161.25 REMARK 500 THR A 541 -62.34 -94.29 REMARK 500 SER A 544 72.75 61.63 REMARK 500 PHE A 546 -72.16 -86.98 REMARK 500 MET A 547 71.36 60.52 REMARK 500 LEU A 549 53.60 -114.97 REMARK 500 ILE B 64 -57.65 -124.78 REMARK 500 ASP B 65 71.75 60.56 REMARK 500 TRP B 70 73.88 55.40 REMARK 500 ALA B 112 31.81 -98.38 REMARK 500 ARG B 115 -1.82 60.20 REMARK 500 THR B 121 -168.23 -124.33 REMARK 500 ASP B 147 80.82 54.03 REMARK 500 PRO B 148 65.85 -67.65 REMARK 500 PRO B 152 77.39 -66.77 REMARK 500 LYS B 168 52.66 -95.80 REMARK 500 LEU B 176 127.10 -35.81 REMARK 500 ASN B 177 -73.53 -81.08 REMARK 500 ASP B 178 -40.76 -140.36 REMARK 500 ASP B 179 49.89 -97.24 REMARK 500 ALA B 184 79.48 54.08 REMARK 500 GLU B 196 -154.97 -85.24 REMARK 500 LYS B 368 -75.36 -54.75 REMARK 500 ALA B 369 4.59 -154.48 REMARK 500 PHE B 436 -12.33 72.57 REMARK 500 ILE B 456 -64.20 -120.62 REMARK 500 THR B 506 70.91 59.29 REMARK 500 LEU B 517 6.76 58.35 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 175 LEU A 176 -145.09 REMARK 500 LEU A 176 ASN A 177 -149.13 REMARK 500 PHE A 367 LYS A 368 -128.71 REMARK 500 ALA A 369 ARG A 370 -139.48 REMARK 500 PHE A 436 ASP A 437 148.07 REMARK 500 GLN A 458 PRO A 459 -145.28 REMARK 500 PRO A 459 PRO A 460 132.79 REMARK 500 TYR B 175 LEU B 176 -145.10 REMARK 500 LEU B 176 ASN B 177 -149.12 REMARK 500 PHE B 367 LYS B 368 -128.74 REMARK 500 ALA B 369 ARG B 370 -139.48 REMARK 500 PHE B 436 ASP B 437 148.07 REMARK 500 GLN B 458 PRO B 459 -145.32 REMARK 500 PRO B 459 PRO B 460 132.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 437 OD2 REMARK 620 2 ASP A 439 OD2 123.0 REMARK 620 3 THR A 443 O 70.0 104.7 REMARK 620 4 THR A 443 OG1 108.8 34.2 70.6 REMARK 620 5 GLU A 448 OE2 133.5 97.9 123.4 117.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 437 OD2 REMARK 620 2 ASP B 439 OD2 123.0 REMARK 620 3 THR B 443 O 70.0 104.8 REMARK 620 4 THR B 443 OG1 108.8 34.2 70.6 REMARK 620 5 GLU B 448 OE2 133.5 97.9 123.4 117.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30910 RELATED DB: EMDB REMARK 900 STRUCTURE OF DROSOPHILA MELANOGASTER GLCNAC-1-PHOSPHOTRANSFERASE DBREF 7DXI A 50 630 UNP A1Z7S7 A1Z7S7_DROME 50 630 DBREF 7DXI B 50 630 UNP A1Z7S7 A1Z7S7_DROME 50 630 SEQADV 7DXI ASP A 208 UNP A1Z7S7 GLY 208 CONFLICT SEQADV 7DXI ASP B 208 UNP A1Z7S7 GLY 208 CONFLICT SEQRES 1 A 581 GLU GLU GLY GLN THR GLY GLY PHE SER SER ALA CYS THR SEQRES 2 A 581 ALA ILE ASP ALA VAL TYR THR TRP VAL ASN GLY SER ASP SEQRES 3 A 581 PRO ASN PHE ILE GLU ASP ILE ARG ARG PHE ASP ASP LYS SEQRES 4 A 581 TYR ASP PRO SER ARG PHE ASP ASP LYS ASN GLU LEU ARG SEQRES 5 A 581 TYR SER LEU ARG SER LEU GLU LYS HIS ALA ALA TRP ILE SEQRES 6 A 581 ARG HIS VAL TYR ILE VAL THR ASN GLY GLN ILE PRO SER SEQRES 7 A 581 TRP LEU ASP LEU SER TYR GLU ARG VAL THR VAL VAL PRO SEQRES 8 A 581 HIS GLU VAL LEU ALA PRO ASP PRO ASP GLN LEU PRO THR SEQRES 9 A 581 PHE SER SER SER ALA ILE GLU THR PHE LEU HIS ARG ILE SEQRES 10 A 581 PRO LYS LEU SER LYS ARG PHE LEU TYR LEU ASN ASP ASP SEQRES 11 A 581 ILE PHE LEU GLY ALA PRO LEU TYR PRO GLU ASP LEU TYR SEQRES 12 A 581 THR GLU ALA GLU GLY VAL ARG VAL TYR GLN ALA TRP MET SEQRES 13 A 581 VAL PRO ASP CYS ALA LEU ASP CYS PRO TRP THR TYR ILE SEQRES 14 A 581 GLY ASP GLY ALA CYS ASP ARG HIS CYS ASN ILE ASP ALA SEQRES 15 A 581 CYS GLN PHE ASP GLY GLY ASP CYS SER GLU THR GLY PRO SEQRES 16 A 581 ALA SER ASP ALA HIS VAL ILE PRO PRO SER LYS GLU VAL SEQRES 17 A 581 LEU GLU VAL GLN PRO ALA ALA VAL PRO GLN SER ARG VAL SEQRES 18 A 581 HIS ARG PHE PRO GLN MET GLY LEU GLN LYS LEU PHE ARG SEQRES 19 A 581 ARG SER SER ALA ASN PHE LYS ASP VAL MET ARG HIS ARG SEQRES 20 A 581 ASN VAL SER THR LEU LYS GLU LEU ARG ARG ILE VAL GLU SEQRES 21 A 581 ARG PHE ASN LYS ALA LYS LEU MET SER LEU ASN PRO GLU SEQRES 22 A 581 LEU GLU THR SER SER SER GLU PRO GLN THR THR GLN ARG SEQRES 23 A 581 HIS GLY LEU ARG LYS GLU ASP PHE LYS SER SER THR ASP SEQRES 24 A 581 ILE TYR SER HIS SER LEU ILE ALA THR ASN MET LEU LEU SEQRES 25 A 581 ASN ARG ALA TYR GLY PHE LYS ALA ARG HIS VAL LEU ALA SEQRES 26 A 581 HIS VAL GLY PHE LEU ILE ASP LYS ASP ILE VAL GLU ALA SEQRES 27 A 581 MET GLN ARG ARG PHE HIS GLN GLN ILE LEU ASP THR ALA SEQRES 28 A 581 HIS GLN ARG PHE ARG ALA PRO THR ASP LEU GLN TYR ALA SEQRES 29 A 581 PHE ALA TYR TYR SER PHE LEU MET SER GLU THR LYS VAL SEQRES 30 A 581 MET SER VAL GLU GLU ILE PHE ASP GLU PHE ASP THR ASP SEQRES 31 A 581 GLY SER ALA THR TRP SER ASP ARG GLU VAL ARG THR PHE SEQRES 32 A 581 LEU THR ARG ILE TYR GLN PRO PRO LEU ASP TRP SER ALA SEQRES 33 A 581 MET ARG TYR PHE GLU GLU VAL VAL GLN ASN CYS THR ARG SEQRES 34 A 581 ASN LEU GLY MET HIS LEU LYS VAL ASP THR VAL GLU HIS SEQRES 35 A 581 SER THR LEU VAL TYR GLU ARG TYR GLU ASP SER ASN LEU SEQRES 36 A 581 PRO THR ILE THR ARG ASP LEU VAL VAL ARG CYS PRO LEU SEQRES 37 A 581 LEU ALA GLU ALA LEU ALA ALA ASN PHE ALA VAL ARG PRO SEQRES 38 A 581 LYS TYR ASN PHE HIS VAL SER PRO LYS ARG THR SER HIS SEQRES 39 A 581 SER ASN PHE MET MET LEU THR SER ASN LEU THR GLU VAL SEQRES 40 A 581 VAL GLU SER LEU ASP ARG LEU ARG ARG ASN PRO ARG LYS SEQRES 41 A 581 PHE ASN CYS ILE ASN ASP ASN LEU ASP ALA ASN ARG GLY SEQRES 42 A 581 GLU ASP ASN GLU MET VAL ARG HIS LEU LEU GLU ASP PHE SEQRES 43 A 581 TYR LEU SER PHE PHE PRO ARG ARG SER LYS PHE GLU LEU SEQRES 44 A 581 PRO PRO GLN TYR ARG ASN ARG PHE GLU SER TRP ARG ASP SEQRES 45 A 581 PHE GLN ARG TRP LYS ARG ARG LYS ARG SEQRES 1 B 581 GLU GLU GLY GLN THR GLY GLY PHE SER SER ALA CYS THR SEQRES 2 B 581 ALA ILE ASP ALA VAL TYR THR TRP VAL ASN GLY SER ASP SEQRES 3 B 581 PRO ASN PHE ILE GLU ASP ILE ARG ARG PHE ASP ASP LYS SEQRES 4 B 581 TYR ASP PRO SER ARG PHE ASP ASP LYS ASN GLU LEU ARG SEQRES 5 B 581 TYR SER LEU ARG SER LEU GLU LYS HIS ALA ALA TRP ILE SEQRES 6 B 581 ARG HIS VAL TYR ILE VAL THR ASN GLY GLN ILE PRO SER SEQRES 7 B 581 TRP LEU ASP LEU SER TYR GLU ARG VAL THR VAL VAL PRO SEQRES 8 B 581 HIS GLU VAL LEU ALA PRO ASP PRO ASP GLN LEU PRO THR SEQRES 9 B 581 PHE SER SER SER ALA ILE GLU THR PHE LEU HIS ARG ILE SEQRES 10 B 581 PRO LYS LEU SER LYS ARG PHE LEU TYR LEU ASN ASP ASP SEQRES 11 B 581 ILE PHE LEU GLY ALA PRO LEU TYR PRO GLU ASP LEU TYR SEQRES 12 B 581 THR GLU ALA GLU GLY VAL ARG VAL TYR GLN ALA TRP MET SEQRES 13 B 581 VAL PRO ASP CYS ALA LEU ASP CYS PRO TRP THR TYR ILE SEQRES 14 B 581 GLY ASP GLY ALA CYS ASP ARG HIS CYS ASN ILE ASP ALA SEQRES 15 B 581 CYS GLN PHE ASP GLY GLY ASP CYS SER GLU THR GLY PRO SEQRES 16 B 581 ALA SER ASP ALA HIS VAL ILE PRO PRO SER LYS GLU VAL SEQRES 17 B 581 LEU GLU VAL GLN PRO ALA ALA VAL PRO GLN SER ARG VAL SEQRES 18 B 581 HIS ARG PHE PRO GLN MET GLY LEU GLN LYS LEU PHE ARG SEQRES 19 B 581 ARG SER SER ALA ASN PHE LYS ASP VAL MET ARG HIS ARG SEQRES 20 B 581 ASN VAL SER THR LEU LYS GLU LEU ARG ARG ILE VAL GLU SEQRES 21 B 581 ARG PHE ASN LYS ALA LYS LEU MET SER LEU ASN PRO GLU SEQRES 22 B 581 LEU GLU THR SER SER SER GLU PRO GLN THR THR GLN ARG SEQRES 23 B 581 HIS GLY LEU ARG LYS GLU ASP PHE LYS SER SER THR ASP SEQRES 24 B 581 ILE TYR SER HIS SER LEU ILE ALA THR ASN MET LEU LEU SEQRES 25 B 581 ASN ARG ALA TYR GLY PHE LYS ALA ARG HIS VAL LEU ALA SEQRES 26 B 581 HIS VAL GLY PHE LEU ILE ASP LYS ASP ILE VAL GLU ALA SEQRES 27 B 581 MET GLN ARG ARG PHE HIS GLN GLN ILE LEU ASP THR ALA SEQRES 28 B 581 HIS GLN ARG PHE ARG ALA PRO THR ASP LEU GLN TYR ALA SEQRES 29 B 581 PHE ALA TYR TYR SER PHE LEU MET SER GLU THR LYS VAL SEQRES 30 B 581 MET SER VAL GLU GLU ILE PHE ASP GLU PHE ASP THR ASP SEQRES 31 B 581 GLY SER ALA THR TRP SER ASP ARG GLU VAL ARG THR PHE SEQRES 32 B 581 LEU THR ARG ILE TYR GLN PRO PRO LEU ASP TRP SER ALA SEQRES 33 B 581 MET ARG TYR PHE GLU GLU VAL VAL GLN ASN CYS THR ARG SEQRES 34 B 581 ASN LEU GLY MET HIS LEU LYS VAL ASP THR VAL GLU HIS SEQRES 35 B 581 SER THR LEU VAL TYR GLU ARG TYR GLU ASP SER ASN LEU SEQRES 36 B 581 PRO THR ILE THR ARG ASP LEU VAL VAL ARG CYS PRO LEU SEQRES 37 B 581 LEU ALA GLU ALA LEU ALA ALA ASN PHE ALA VAL ARG PRO SEQRES 38 B 581 LYS TYR ASN PHE HIS VAL SER PRO LYS ARG THR SER HIS SEQRES 39 B 581 SER ASN PHE MET MET LEU THR SER ASN LEU THR GLU VAL SEQRES 40 B 581 VAL GLU SER LEU ASP ARG LEU ARG ARG ASN PRO ARG LYS SEQRES 41 B 581 PHE ASN CYS ILE ASN ASP ASN LEU ASP ALA ASN ARG GLY SEQRES 42 B 581 GLU ASP ASN GLU MET VAL ARG HIS LEU LEU GLU ASP PHE SEQRES 43 B 581 TYR LEU SER PHE PHE PRO ARG ARG SER LYS PHE GLU LEU SEQRES 44 B 581 PRO PRO GLN TYR ARG ASN ARG PHE GLU SER TRP ARG ASP SEQRES 45 B 581 PHE GLN ARG TRP LYS ARG ARG LYS ARG HET CA A 701 1 HET CA B 701 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) HELIX 1 AA1 ASP A 75 PHE A 85 1 11 HELIX 2 AA2 GLU A 99 TYR A 102 5 4 HELIX 3 AA3 SER A 103 ALA A 111 1 9 HELIX 4 AA4 HIS A 141 ALA A 145 1 5 HELIX 5 AA5 SER A 155 GLU A 160 1 6 HELIX 6 AA6 THR A 161 ILE A 166 5 6 HELIX 7 AA7 TYR A 187 LEU A 191 5 5 HELIX 8 AA8 ILE A 349 ALA A 364 1 16 HELIX 9 AA9 LYS A 382 ARG A 390 1 9 HELIX 10 AB1 PHE A 392 HIS A 401 1 10 HELIX 11 AB2 GLN A 411 TYR A 417 1 7 HELIX 12 AB3 SER A 428 GLU A 435 1 8 HELIX 13 AB4 SER A 445 ARG A 455 1 11 HELIX 14 AB5 ASP A 462 CYS A 476 1 15 HELIX 15 AB6 THR A 508 CYS A 515 1 8 HELIX 16 AB7 LEU A 518 ALA A 524 1 7 HELIX 17 AB8 ASN A 552 ASN A 566 1 15 HELIX 18 AB9 GLU A 583 PHE A 600 1 18 HELIX 19 AC1 ASP B 75 PHE B 85 1 11 HELIX 20 AC2 GLU B 99 TYR B 102 5 4 HELIX 21 AC3 SER B 103 ALA B 111 1 9 HELIX 22 AC4 HIS B 141 ALA B 145 1 5 HELIX 23 AC5 SER B 155 GLU B 160 1 6 HELIX 24 AC6 THR B 161 ILE B 166 5 6 HELIX 25 AC7 TYR B 187 LEU B 191 5 5 HELIX 26 AC8 ILE B 349 ALA B 364 1 16 HELIX 27 AC9 LYS B 382 ARG B 390 1 9 HELIX 28 AD1 PHE B 392 HIS B 401 1 10 HELIX 29 AD2 GLN B 411 TYR B 417 1 7 HELIX 30 AD3 SER B 428 GLU B 435 1 8 HELIX 31 AD4 SER B 445 ARG B 455 1 11 HELIX 32 AD5 ASP B 462 CYS B 476 1 15 HELIX 33 AD6 THR B 508 CYS B 515 1 8 HELIX 34 AD7 LEU B 518 ALA B 524 1 7 HELIX 35 AD8 ASN B 552 ASN B 566 1 15 HELIX 36 AD9 GLU B 583 PHE B 600 1 18 SHEET 1 AA1 3 ALA A 66 TYR A 68 0 SHEET 2 AA1 3 VAL A 117 THR A 121 1 O VAL A 120 N TYR A 68 SHEET 3 AA1 3 VAL A 136 PRO A 140 1 O VAL A 139 N ILE A 119 SHEET 1 AA2 2 ARG A 172 LEU A 174 0 SHEET 2 AA2 2 LEU A 379 ASP A 381 -1 O ILE A 380 N PHE A 173 SHEET 1 AA3 2 ILE A 180 PHE A 181 0 SHEET 2 AA3 2 ASN A 571 CYS A 572 -1 O ASN A 571 N PHE A 181 SHEET 1 AA4 2 ARG A 199 VAL A 200 0 SHEET 2 AA4 2 HIS A 535 VAL A 536 1 O HIS A 535 N VAL A 200 SHEET 1 AA5 3 ALA B 66 TYR B 68 0 SHEET 2 AA5 3 VAL B 117 THR B 121 1 O VAL B 120 N TYR B 68 SHEET 3 AA5 3 VAL B 136 PRO B 140 1 O VAL B 139 N ILE B 119 SHEET 1 AA6 2 ARG B 172 LEU B 174 0 SHEET 2 AA6 2 LEU B 379 ASP B 381 -1 O ILE B 380 N PHE B 173 SHEET 1 AA7 2 ILE B 180 PHE B 181 0 SHEET 2 AA7 2 ASN B 571 CYS B 572 -1 O ASN B 571 N PHE B 181 SHEET 1 AA8 2 ARG B 199 VAL B 200 0 SHEET 2 AA8 2 HIS B 535 VAL B 536 1 O HIS B 535 N VAL B 200 SSBOND 1 CYS A 476 CYS A 515 1555 1555 2.03 SSBOND 2 CYS B 476 CYS B 515 1555 1555 2.03 LINK OD2 ASP A 437 CA CA A 701 1555 1555 2.73 LINK OD2 ASP A 439 CA CA A 701 1555 1555 2.53 LINK O THR A 443 CA CA A 701 1555 1555 2.25 LINK OG1 THR A 443 CA CA A 701 1555 1555 2.47 LINK OE2 GLU A 448 CA CA A 701 1555 1555 2.64 LINK OD2 ASP B 437 CA CA B 701 1555 1555 2.73 LINK OD2 ASP B 439 CA CA B 701 1555 1555 2.53 LINK O THR B 443 CA CA B 701 1555 1555 2.25 LINK OG1 THR B 443 CA CA B 701 1555 1555 2.47 LINK OE2 GLU B 448 CA CA B 701 1555 1555 2.64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1848 6131 CONECT 1863 6131 CONECT 1882 6131 CONECT 1884 6131 CONECT 1933 6131 CONECT 2176 2278 CONECT 2278 2176 CONECT 4913 6132 CONECT 4928 6132 CONECT 4947 6132 CONECT 4949 6132 CONECT 4998 6132 CONECT 5241 5343 CONECT 5343 5241 CONECT 6131 1848 1863 1882 1884 CONECT 6131 1933 CONECT 6132 4913 4928 4947 4949 CONECT 6132 4998 MASTER 677 0 2 36 18 0 0 6 6130 2 18 90 END