data_7DXZ # _entry.id 7DXZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7DXZ pdb_00007dxz 10.2210/pdb7dxz/pdb WWPDB D_1300020409 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7DXZ _pdbx_database_status.recvd_initial_deposition_date 2021-01-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yagi, S.' 1 ? 'Tagami, S.' 2 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 143 ? 15998 16006 'Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.' 2021 ? 10.1021/jacs.1c05367 34559526 ? ? ? ? ? ? ? ? US ? ? 1 Biorxiv ? ? 2692-8205 ? ? ? ? ? ? 'Seven amino acid types suffice to reconstruct the core fold of RNA polymerase.' 2021 ? 10.1101/2021.02.22.432383 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi, S.' 1 ? primary 'Padhi, A.K.' 2 ? primary 'Vucinic, J.' 3 ? primary 'Barbe, S.' 4 ? primary 'Schiex, T.' 5 ? primary 'Nakagawa, R.' 6 0000-0002-6178-2945 primary 'Simoncini, D.' 7 ? primary 'Zhang, K.Y.J.' 8 0000-0002-9282-8045 primary 'Tagami, S.' 9 0000-0002-1720-3627 1 'Yagi, S.' 10 ? 1 'Padhi, A.K.' 11 ? 1 'Vucinic, J.' 12 ? 1 'Barbe, S.' 13 ? 1 'Schiex, T.' 14 ? 1 'Nakagawa, R.' 15 ? 1 'Simoncini, D.' 16 ? 1 'Zhang, K.Y.J.' 17 ? 1 'Tagami, S.' 18 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7DXZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.070 _cell.length_a_esd ? _cell.length_b 52.070 _cell.length_b_esd ? _cell.length_c 146.376 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mk2h_deltaMILPYS protein' 5124.123 4 ? ? ? ? 2 non-polymer syn 'MALONIC ACID' 104.061 7 ? ? ? ? 3 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPMPGKKVVARVAEARAEDVGKRVVRVDKAERAKVGVKVGDVVEVKKV _entity_poly.pdbx_seq_one_letter_code_can GPMPGKKVVARVAEARAEDVGKRVVRVDKAERAKVGVKVGDVVEVKKV _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 MET n 1 4 PRO n 1 5 GLY n 1 6 LYS n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 ALA n 1 11 ARG n 1 12 VAL n 1 13 ALA n 1 14 GLU n 1 15 ALA n 1 16 ARG n 1 17 ALA n 1 18 GLU n 1 19 ASP n 1 20 VAL n 1 21 GLY n 1 22 LYS n 1 23 ARG n 1 24 VAL n 1 25 VAL n 1 26 ARG n 1 27 VAL n 1 28 ASP n 1 29 LYS n 1 30 ALA n 1 31 GLU n 1 32 ARG n 1 33 ALA n 1 34 LYS n 1 35 VAL n 1 36 GLY n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 GLY n 1 41 ASP n 1 42 VAL n 1 43 VAL n 1 44 GLU n 1 45 VAL n 1 46 LYS n 1 47 LYS n 1 48 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7DXZ _struct_ref.pdbx_db_accession 7DXZ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7DXZ A 1 ? 48 ? 7DXZ -1 ? 46 ? -1 46 2 1 7DXZ B 1 ? 48 ? 7DXZ -1 ? 46 ? -1 46 3 1 7DXZ C 1 ? 48 ? 7DXZ -1 ? 46 ? -1 46 4 1 7DXZ D 1 ? 48 ? 7DXZ -1 ? 46 ? -1 46 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLA non-polymer . 'MALONIC ACID' 'DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID' 'C3 H4 O4' 104.061 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7DXZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '3000 M Sodium malonate dibasic' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-11-19 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7DXZ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18940 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 21.37 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.49 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 2.01 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2985 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.957 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 122.000 _refine.B_iso_mean 37.6560 _refine.B_iso_min 13.330 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7DXZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 28.4150 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18909 _refine.ls_number_reflns_R_free 1896 _refine.ls_number_reflns_R_work 17013 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9600 _refine.ls_percent_reflns_R_free 10.0300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1995 _refine.ls_R_factor_R_free 0.2429 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1948 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.500 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7DXX _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.4900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 28.4150 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 1456 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 169 _refine_hist.pdbx_B_iso_mean_ligand 54.92 _refine_hist.pdbx_B_iso_mean_solvent 44.22 _refine_hist.pdbx_number_atoms_protein 1285 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 49 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9000 1.9475 . . 137 1190 100.0000 . . . 0.3042 0.0000 0.2914 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9475 2.0002 . . 134 1218 100.0000 . . . 0.2615 0.0000 0.2103 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0002 2.0590 . . 131 1170 100.0000 . . . 0.2358 0.0000 0.1982 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0590 2.1255 . . 130 1176 100.0000 . . . 0.2437 0.0000 0.2031 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1255 2.2014 . . 130 1204 100.0000 . . . 0.2246 0.0000 0.2003 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2014 2.2895 . . 135 1207 100.0000 . . . 0.2574 0.0000 0.2128 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2895 2.3937 . . 134 1190 100.0000 . . . 0.2713 0.0000 0.2074 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3937 2.5198 . . 135 1197 100.0000 . . . 0.2535 0.0000 0.2124 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5198 2.6775 . . 132 1211 100.0000 . . . 0.2571 0.0000 0.2030 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6775 2.8841 . . 137 1209 100.0000 . . . 0.2357 0.0000 0.2117 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8841 3.1740 . . 135 1219 100.0000 . . . 0.2648 0.0000 0.1969 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1740 3.6325 . . 139 1234 100.0000 . . . 0.2251 0.0000 0.1689 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6325 4.5734 . . 139 1259 100.0000 . . . 0.2017 0.0000 0.1511 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5734 28.415 . . 148 1329 100.0000 . . . 0.2593 0.0000 0.2132 . . . . . . . . . . . # _struct.entry_id 7DXZ _struct.title 'Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer in complex with malonate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7DXZ _struct_keywords.text 'Double psi beta barrel, CHAPERONE' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 16 ? VAL A 20 ? ARG A 14 VAL A 18 5 ? 5 HELX_P HELX_P2 AA2 ASP A 28 ? GLY A 36 ? ASP A 26 GLY A 34 1 ? 9 HELX_P HELX_P3 AA3 ARG B 16 ? VAL B 20 ? ARG B 14 VAL B 18 5 ? 5 HELX_P HELX_P4 AA4 ASP B 28 ? GLY B 36 ? ASP B 26 GLY B 34 1 ? 9 HELX_P HELX_P5 AA5 ARG C 16 ? VAL C 20 ? ARG C 14 VAL C 18 5 ? 5 HELX_P HELX_P6 AA6 ASP C 28 ? GLY C 36 ? ASP C 26 GLY C 34 1 ? 9 HELX_P HELX_P7 AA7 ARG D 16 ? VAL D 20 ? ARG D 14 VAL D 18 5 ? 5 HELX_P HELX_P8 AA8 ASP D 28 ? GLY D 36 ? ASP D 26 GLY D 34 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL B 9 ? GLU B 14 ? VAL B 7 GLU B 12 AA1 2 VAL C 24 ? VAL C 27 ? VAL C 22 VAL C 25 AA1 3 VAL B 24 ? VAL B 27 ? VAL B 22 VAL B 25 AA1 4 VAL C 8 ? GLU C 14 ? VAL C 6 GLU C 12 AA1 5 VAL B 42 ? LYS B 47 ? VAL B 40 LYS B 45 AA1 6 VAL C 42 ? LYS C 47 ? VAL C 40 LYS C 45 AA1 7 VAL B 9 ? GLU B 14 ? VAL B 7 GLU B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG B 11 ? N ARG B 9 O VAL C 25 ? O VAL C 23 AA1 2 3 O ARG C 26 ? O ARG C 24 N ARG B 26 ? N ARG B 24 AA1 3 4 N VAL B 25 ? N VAL B 23 O ALA C 13 ? O ALA C 11 AA1 4 5 O ALA C 10 ? O ALA C 8 N VAL B 43 ? N VAL B 41 AA1 5 6 N GLU B 44 ? N GLU B 42 O LYS C 46 ? O LYS C 44 AA1 6 7 O VAL C 43 ? O VAL C 41 N ALA B 10 ? N ALA B 8 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MLA 101 ? 6 'binding site for residue MLA A 101' AC2 Software A MLA 102 ? 8 'binding site for residue MLA A 102' AC3 Software B MLA 201 ? 4 'binding site for residue MLA B 201' AC4 Software C MLA 101 ? 8 'binding site for residue MLA C 101' AC5 Software C MLA 102 ? 5 'binding site for residue MLA C 102' AC6 Software D MLA 101 ? 8 'binding site for residue MLA D 101' AC7 Software D MLA 102 ? 5 'binding site for residue MLA D 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 29 ? LYS A 27 . ? 1_555 ? 2 AC1 6 ARG A 32 ? ARG A 30 . ? 1_555 ? 3 AC1 6 LYS A 38 ? LYS A 36 . ? 1_555 ? 4 AC1 6 VAL A 39 ? VAL A 37 . ? 1_555 ? 5 AC1 6 HOH L . ? HOH A 204 . ? 1_555 ? 6 AC1 6 HOH L . ? HOH A 212 . ? 1_555 ? 7 AC2 8 GLU A 14 ? GLU A 12 . ? 1_555 ? 8 AC2 8 ALA A 15 ? ALA A 13 . ? 1_555 ? 9 AC2 8 VAL A 20 ? VAL A 18 . ? 1_555 ? 10 AC2 8 ASP A 28 ? ASP A 26 . ? 6_555 ? 11 AC2 8 LYS A 29 ? LYS A 27 . ? 6_555 ? 12 AC2 8 ARG A 32 ? ARG A 30 . ? 6_555 ? 13 AC2 8 HOH L . ? HOH A 216 . ? 1_555 ? 14 AC2 8 ARG D 11 ? ARG D 9 . ? 1_555 ? 15 AC3 4 LYS B 29 ? LYS B 27 . ? 1_555 ? 16 AC3 4 ARG B 32 ? ARG B 30 . ? 1_555 ? 17 AC3 4 LYS B 38 ? LYS B 36 . ? 1_555 ? 18 AC3 4 VAL B 39 ? VAL B 37 . ? 1_555 ? 19 AC4 8 HOH L . ? HOH A 206 . ? 1_665 ? 20 AC4 8 HOH L . ? HOH A 218 . ? 1_665 ? 21 AC4 8 GLU B 14 ? GLU B 12 . ? 1_555 ? 22 AC4 8 ALA B 15 ? ALA B 13 . ? 1_555 ? 23 AC4 8 VAL C 27 ? VAL C 25 . ? 1_555 ? 24 AC4 8 ASP C 28 ? ASP C 26 . ? 1_555 ? 25 AC4 8 LYS C 29 ? LYS C 27 . ? 1_555 ? 26 AC4 8 ARG C 32 ? ARG C 30 . ? 1_555 ? 27 AC5 5 ARG C 32 ? ARG C 30 . ? 1_555 ? 28 AC5 5 LYS C 38 ? LYS C 36 . ? 1_555 ? 29 AC5 5 VAL C 39 ? VAL C 37 . ? 1_555 ? 30 AC5 5 HOH N . ? HOH C 201 . ? 1_555 ? 31 AC5 5 HOH N . ? HOH C 203 . ? 1_555 ? 32 AC6 8 GLU D 14 ? GLU D 12 . ? 5_555 ? 33 AC6 8 ALA D 15 ? ALA D 13 . ? 5_555 ? 34 AC6 8 VAL D 20 ? VAL D 18 . ? 5_555 ? 35 AC6 8 VAL D 27 ? VAL D 25 . ? 1_555 ? 36 AC6 8 ASP D 28 ? ASP D 26 . ? 1_555 ? 37 AC6 8 LYS D 29 ? LYS D 27 . ? 1_555 ? 38 AC6 8 ARG D 32 ? ARG D 30 . ? 1_555 ? 39 AC6 8 HOH O . ? HOH D 219 . ? 1_555 ? 40 AC7 5 LYS D 29 ? LYS D 27 . ? 1_555 ? 41 AC7 5 ARG D 32 ? ARG D 30 . ? 1_555 ? 42 AC7 5 LYS D 38 ? LYS D 36 . ? 1_555 ? 43 AC7 5 VAL D 39 ? VAL D 37 . ? 1_555 ? 44 AC7 5 HOH O . ? HOH D 212 . ? 1_555 ? # _atom_sites.entry_id 7DXZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.019205 _atom_sites.fract_transf_matrix[1][2] 0.011088 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022176 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006832 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 PRO 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 PRO 4 2 ? ? ? A . n A 1 5 GLY 5 3 ? ? ? A . n A 1 6 LYS 6 4 ? ? ? A . n A 1 7 LYS 7 5 5 LYS LYS A . n A 1 8 VAL 8 6 6 VAL VAL A . n A 1 9 VAL 9 7 7 VAL VAL A . n A 1 10 ALA 10 8 8 ALA ALA A . n A 1 11 ARG 11 9 9 ARG ARG A . n A 1 12 VAL 12 10 10 VAL VAL A . n A 1 13 ALA 13 11 11 ALA ALA A . n A 1 14 GLU 14 12 12 GLU GLU A . n A 1 15 ALA 15 13 13 ALA ALA A . n A 1 16 ARG 16 14 14 ARG ARG A . n A 1 17 ALA 17 15 15 ALA ALA A . n A 1 18 GLU 18 16 16 GLU GLU A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 GLY 21 19 19 GLY GLY A . n A 1 22 LYS 22 20 20 LYS LYS A . n A 1 23 ARG 23 21 21 ARG ARG A . n A 1 24 VAL 24 22 22 VAL VAL A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 VAL 27 25 25 VAL VAL A . n A 1 28 ASP 28 26 26 ASP ASP A . n A 1 29 LYS 29 27 27 LYS LYS A . n A 1 30 ALA 30 28 28 ALA ALA A . n A 1 31 GLU 31 29 29 GLU GLU A . n A 1 32 ARG 32 30 30 ARG ARG A . n A 1 33 ALA 33 31 31 ALA ALA A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 VAL 35 33 33 VAL VAL A . n A 1 36 GLY 36 34 34 GLY GLY A . n A 1 37 VAL 37 35 35 VAL VAL A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 VAL 39 37 37 VAL VAL A . n A 1 40 GLY 40 38 38 GLY GLY A . n A 1 41 ASP 41 39 39 ASP ASP A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 VAL 43 41 41 VAL VAL A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 VAL 45 43 43 VAL VAL A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 LYS 47 45 45 LYS LYS A . n A 1 48 VAL 48 46 46 VAL VAL A . n B 1 1 GLY 1 -1 ? ? ? B . n B 1 2 PRO 2 0 ? ? ? B . n B 1 3 MET 3 1 ? ? ? B . n B 1 4 PRO 4 2 ? ? ? B . n B 1 5 GLY 5 3 ? ? ? B . n B 1 6 LYS 6 4 ? ? ? B . n B 1 7 LYS 7 5 5 LYS LYS B . n B 1 8 VAL 8 6 6 VAL VAL B . n B 1 9 VAL 9 7 7 VAL VAL B . n B 1 10 ALA 10 8 8 ALA ALA B . n B 1 11 ARG 11 9 9 ARG ARG B . n B 1 12 VAL 12 10 10 VAL VAL B . n B 1 13 ALA 13 11 11 ALA ALA B . n B 1 14 GLU 14 12 12 GLU GLU B . n B 1 15 ALA 15 13 13 ALA ALA B . n B 1 16 ARG 16 14 14 ARG ARG B . n B 1 17 ALA 17 15 15 ALA ALA B . n B 1 18 GLU 18 16 16 GLU GLU B . n B 1 19 ASP 19 17 17 ASP ASP B . n B 1 20 VAL 20 18 18 VAL VAL B . n B 1 21 GLY 21 19 19 GLY GLY B . n B 1 22 LYS 22 20 20 LYS LYS B . n B 1 23 ARG 23 21 21 ARG ARG B . n B 1 24 VAL 24 22 22 VAL VAL B . n B 1 25 VAL 25 23 23 VAL VAL B . n B 1 26 ARG 26 24 24 ARG ARG B . n B 1 27 VAL 27 25 25 VAL VAL B . n B 1 28 ASP 28 26 26 ASP ASP B . n B 1 29 LYS 29 27 27 LYS LYS B . n B 1 30 ALA 30 28 28 ALA ALA B . n B 1 31 GLU 31 29 29 GLU GLU B . n B 1 32 ARG 32 30 30 ARG ARG B . n B 1 33 ALA 33 31 31 ALA ALA B . n B 1 34 LYS 34 32 32 LYS LYS B . n B 1 35 VAL 35 33 33 VAL VAL B . n B 1 36 GLY 36 34 34 GLY GLY B . n B 1 37 VAL 37 35 35 VAL VAL B . n B 1 38 LYS 38 36 36 LYS LYS B . n B 1 39 VAL 39 37 37 VAL VAL B . n B 1 40 GLY 40 38 38 GLY GLY B . n B 1 41 ASP 41 39 39 ASP ASP B . n B 1 42 VAL 42 40 40 VAL VAL B . n B 1 43 VAL 43 41 41 VAL VAL B . n B 1 44 GLU 44 42 42 GLU GLU B . n B 1 45 VAL 45 43 43 VAL VAL B . n B 1 46 LYS 46 44 44 LYS LYS B . n B 1 47 LYS 47 45 45 LYS LYS B . n B 1 48 VAL 48 46 46 VAL VAL B . n C 1 1 GLY 1 -1 ? ? ? C . n C 1 2 PRO 2 0 ? ? ? C . n C 1 3 MET 3 1 ? ? ? C . n C 1 4 PRO 4 2 ? ? ? C . n C 1 5 GLY 5 3 ? ? ? C . n C 1 6 LYS 6 4 ? ? ? C . n C 1 7 LYS 7 5 5 LYS LYS C . n C 1 8 VAL 8 6 6 VAL VAL C . n C 1 9 VAL 9 7 7 VAL VAL C . n C 1 10 ALA 10 8 8 ALA ALA C . n C 1 11 ARG 11 9 9 ARG ARG C . n C 1 12 VAL 12 10 10 VAL VAL C . n C 1 13 ALA 13 11 11 ALA ALA C . n C 1 14 GLU 14 12 12 GLU GLU C . n C 1 15 ALA 15 13 13 ALA ALA C . n C 1 16 ARG 16 14 14 ARG ARG C . n C 1 17 ALA 17 15 15 ALA ALA C . n C 1 18 GLU 18 16 16 GLU GLU C . n C 1 19 ASP 19 17 17 ASP ASP C . n C 1 20 VAL 20 18 18 VAL VAL C . n C 1 21 GLY 21 19 19 GLY GLY C . n C 1 22 LYS 22 20 20 LYS LYS C . n C 1 23 ARG 23 21 21 ARG ARG C . n C 1 24 VAL 24 22 22 VAL VAL C . n C 1 25 VAL 25 23 23 VAL VAL C . n C 1 26 ARG 26 24 24 ARG ARG C . n C 1 27 VAL 27 25 25 VAL VAL C . n C 1 28 ASP 28 26 26 ASP ASP C . n C 1 29 LYS 29 27 27 LYS LYS C . n C 1 30 ALA 30 28 28 ALA ALA C . n C 1 31 GLU 31 29 29 GLU GLU C . n C 1 32 ARG 32 30 30 ARG ARG C . n C 1 33 ALA 33 31 31 ALA ALA C . n C 1 34 LYS 34 32 32 LYS LYS C . n C 1 35 VAL 35 33 33 VAL VAL C . n C 1 36 GLY 36 34 34 GLY GLY C . n C 1 37 VAL 37 35 35 VAL VAL C . n C 1 38 LYS 38 36 36 LYS LYS C . n C 1 39 VAL 39 37 37 VAL VAL C . n C 1 40 GLY 40 38 38 GLY GLY C . n C 1 41 ASP 41 39 39 ASP ASP C . n C 1 42 VAL 42 40 40 VAL VAL C . n C 1 43 VAL 43 41 41 VAL VAL C . n C 1 44 GLU 44 42 42 GLU GLU C . n C 1 45 VAL 45 43 43 VAL VAL C . n C 1 46 LYS 46 44 44 LYS LYS C . n C 1 47 LYS 47 45 45 LYS LYS C . n C 1 48 VAL 48 46 46 VAL VAL C . n D 1 1 GLY 1 -1 ? ? ? D . n D 1 2 PRO 2 0 ? ? ? D . n D 1 3 MET 3 1 ? ? ? D . n D 1 4 PRO 4 2 ? ? ? D . n D 1 5 GLY 5 3 ? ? ? D . n D 1 6 LYS 6 4 4 LYS LYS D . n D 1 7 LYS 7 5 5 LYS LYS D . n D 1 8 VAL 8 6 6 VAL VAL D . n D 1 9 VAL 9 7 7 VAL VAL D . n D 1 10 ALA 10 8 8 ALA ALA D . n D 1 11 ARG 11 9 9 ARG ARG D . n D 1 12 VAL 12 10 10 VAL VAL D . n D 1 13 ALA 13 11 11 ALA ALA D . n D 1 14 GLU 14 12 12 GLU GLU D . n D 1 15 ALA 15 13 13 ALA ALA D . n D 1 16 ARG 16 14 14 ARG ARG D . n D 1 17 ALA 17 15 15 ALA ALA D . n D 1 18 GLU 18 16 16 GLU GLU D . n D 1 19 ASP 19 17 17 ASP ASP D . n D 1 20 VAL 20 18 18 VAL VAL D . n D 1 21 GLY 21 19 19 GLY GLY D . n D 1 22 LYS 22 20 20 LYS LYS D . n D 1 23 ARG 23 21 21 ARG ARG D . n D 1 24 VAL 24 22 22 VAL VAL D . n D 1 25 VAL 25 23 23 VAL VAL D . n D 1 26 ARG 26 24 24 ARG ARG D . n D 1 27 VAL 27 25 25 VAL VAL D . n D 1 28 ASP 28 26 26 ASP ASP D . n D 1 29 LYS 29 27 27 LYS LYS D . n D 1 30 ALA 30 28 28 ALA ALA D . n D 1 31 GLU 31 29 29 GLU GLU D . n D 1 32 ARG 32 30 30 ARG ARG D . n D 1 33 ALA 33 31 31 ALA ALA D . n D 1 34 LYS 34 32 32 LYS LYS D . n D 1 35 VAL 35 33 33 VAL VAL D . n D 1 36 GLY 36 34 34 GLY GLY D . n D 1 37 VAL 37 35 35 VAL VAL D . n D 1 38 LYS 38 36 36 LYS LYS D . n D 1 39 VAL 39 37 37 VAL VAL D . n D 1 40 GLY 40 38 38 GLY GLY D . n D 1 41 ASP 41 39 39 ASP ASP D . n D 1 42 VAL 42 40 40 VAL VAL D . n D 1 43 VAL 43 41 41 VAL VAL D . n D 1 44 GLU 44 42 42 GLU GLU D . n D 1 45 VAL 45 43 43 VAL VAL D . n D 1 46 LYS 46 44 44 LYS LYS D . n D 1 47 LYS 47 45 45 LYS LYS D . n D 1 48 VAL 48 46 46 VAL VAL D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MLA 1 101 101 MLA MLA A . F 2 MLA 1 102 301 MLA MLA A . G 2 MLA 1 201 201 MLA MLA B . H 2 MLA 1 101 101 MLA MLA C . I 2 MLA 1 102 101 MLA MLA C . J 2 MLA 1 101 101 MLA MLA D . K 2 MLA 1 102 201 MLA MLA D . L 3 HOH 1 201 78 HOH HOH A . L 3 HOH 2 202 87 HOH HOH A . L 3 HOH 3 203 6 HOH HOH A . L 3 HOH 4 204 30 HOH HOH A . L 3 HOH 5 205 42 HOH HOH A . L 3 HOH 6 206 3 HOH HOH A . L 3 HOH 7 207 17 HOH HOH A . L 3 HOH 8 208 1 HOH HOH A . L 3 HOH 9 209 4 HOH HOH A . L 3 HOH 10 210 24 HOH HOH A . L 3 HOH 11 211 93 HOH HOH A . L 3 HOH 12 212 33 HOH HOH A . L 3 HOH 13 213 2 HOH HOH A . L 3 HOH 14 214 59 HOH HOH A . L 3 HOH 15 215 75 HOH HOH A . L 3 HOH 16 216 105 HOH HOH A . L 3 HOH 17 217 8 HOH HOH A . L 3 HOH 18 218 100 HOH HOH A . L 3 HOH 19 219 110 HOH HOH A . L 3 HOH 20 220 12 HOH HOH A . L 3 HOH 21 221 11 HOH HOH A . L 3 HOH 22 222 56 HOH HOH A . L 3 HOH 23 223 111 HOH HOH A . L 3 HOH 24 224 55 HOH HOH A . L 3 HOH 25 225 95 HOH HOH A . L 3 HOH 26 226 107 HOH HOH A . L 3 HOH 27 227 20 HOH HOH A . L 3 HOH 28 228 98 HOH HOH A . L 3 HOH 29 229 29 HOH HOH A . L 3 HOH 30 230 94 HOH HOH A . L 3 HOH 31 231 40 HOH HOH A . L 3 HOH 32 232 86 HOH HOH A . L 3 HOH 33 233 72 HOH HOH A . L 3 HOH 34 234 27 HOH HOH A . L 3 HOH 35 235 53 HOH HOH A . L 3 HOH 36 236 101 HOH HOH A . L 3 HOH 37 237 61 HOH HOH A . L 3 HOH 38 238 114 HOH HOH A . L 3 HOH 39 239 112 HOH HOH A . L 3 HOH 40 240 108 HOH HOH A . M 3 HOH 1 301 121 HOH HOH B . M 3 HOH 2 302 50 HOH HOH B . M 3 HOH 3 303 16 HOH HOH B . M 3 HOH 4 304 9 HOH HOH B . M 3 HOH 5 305 62 HOH HOH B . M 3 HOH 6 306 83 HOH HOH B . M 3 HOH 7 307 65 HOH HOH B . M 3 HOH 8 308 119 HOH HOH B . M 3 HOH 9 309 77 HOH HOH B . M 3 HOH 10 310 37 HOH HOH B . M 3 HOH 11 311 21 HOH HOH B . M 3 HOH 12 312 28 HOH HOH B . M 3 HOH 13 313 46 HOH HOH B . M 3 HOH 14 314 71 HOH HOH B . M 3 HOH 15 315 58 HOH HOH B . M 3 HOH 16 316 85 HOH HOH B . M 3 HOH 17 317 45 HOH HOH B . M 3 HOH 18 318 54 HOH HOH B . M 3 HOH 19 319 41 HOH HOH B . M 3 HOH 20 320 60 HOH HOH B . M 3 HOH 21 321 66 HOH HOH B . M 3 HOH 22 322 70 HOH HOH B . M 3 HOH 23 323 73 HOH HOH B . M 3 HOH 24 324 104 HOH HOH B . M 3 HOH 25 325 67 HOH HOH B . M 3 HOH 26 326 106 HOH HOH B . M 3 HOH 27 327 99 HOH HOH B . M 3 HOH 28 328 122 HOH HOH B . N 3 HOH 1 201 117 HOH HOH C . N 3 HOH 2 202 102 HOH HOH C . N 3 HOH 3 203 113 HOH HOH C . N 3 HOH 4 204 22 HOH HOH C . N 3 HOH 5 205 34 HOH HOH C . N 3 HOH 6 206 32 HOH HOH C . N 3 HOH 7 207 7 HOH HOH C . N 3 HOH 8 208 5 HOH HOH C . N 3 HOH 9 209 19 HOH HOH C . N 3 HOH 10 210 69 HOH HOH C . N 3 HOH 11 211 13 HOH HOH C . N 3 HOH 12 212 68 HOH HOH C . N 3 HOH 13 213 63 HOH HOH C . N 3 HOH 14 214 35 HOH HOH C . N 3 HOH 15 215 26 HOH HOH C . N 3 HOH 16 216 15 HOH HOH C . N 3 HOH 17 217 52 HOH HOH C . N 3 HOH 18 218 25 HOH HOH C . N 3 HOH 19 219 82 HOH HOH C . N 3 HOH 20 220 43 HOH HOH C . N 3 HOH 21 221 14 HOH HOH C . N 3 HOH 22 222 103 HOH HOH C . N 3 HOH 23 223 31 HOH HOH C . N 3 HOH 24 224 81 HOH HOH C . N 3 HOH 25 225 97 HOH HOH C . N 3 HOH 26 226 89 HOH HOH C . N 3 HOH 27 227 92 HOH HOH C . N 3 HOH 28 228 118 HOH HOH C . N 3 HOH 29 229 80 HOH HOH C . N 3 HOH 30 230 48 HOH HOH C . N 3 HOH 31 231 79 HOH HOH C . N 3 HOH 32 232 90 HOH HOH C . O 3 HOH 1 201 120 HOH HOH D . O 3 HOH 2 202 23 HOH HOH D . O 3 HOH 3 203 49 HOH HOH D . O 3 HOH 4 204 84 HOH HOH D . O 3 HOH 5 205 57 HOH HOH D . O 3 HOH 6 206 74 HOH HOH D . O 3 HOH 7 207 10 HOH HOH D . O 3 HOH 8 208 47 HOH HOH D . O 3 HOH 9 209 51 HOH HOH D . O 3 HOH 10 210 64 HOH HOH D . O 3 HOH 11 211 116 HOH HOH D . O 3 HOH 12 212 38 HOH HOH D . O 3 HOH 13 213 91 HOH HOH D . O 3 HOH 14 214 44 HOH HOH D . O 3 HOH 15 215 39 HOH HOH D . O 3 HOH 16 216 123 HOH HOH D . O 3 HOH 17 217 18 HOH HOH D . O 3 HOH 18 218 76 HOH HOH D . O 3 HOH 19 219 109 HOH HOH D . O 3 HOH 20 220 36 HOH HOH D . O 3 HOH 21 221 96 HOH HOH D . O 3 HOH 22 222 88 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,3 A,E,F,L 2 1 B,C,G,H,I,M,N 3 1,2 D,J,K,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4770 ? 1 MORE -24 ? 1 'SSA (A^2)' 4860 ? 2 'ABSA (A^2)' 4660 ? 2 MORE -23 ? 2 'SSA (A^2)' 4780 ? 3 'ABSA (A^2)' 5200 ? 3 MORE -41 ? 3 'SSA (A^2)' 5080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 97.5840000000 3 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 48.7920000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-29 2 'Structure model' 1 1 2021-11-17 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' citation 6 3 'Structure model' pdbx_initial_refinement_model # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_citation.journal_id_ISSN' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7DXZ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1A C MLA 102 ? ? O C HOH 201 ? ? 1.88 2 1 O3A C MLA 102 ? ? O C HOH 201 ? ? 1.96 3 1 O C HOH 220 ? ? O C HOH 232 ? ? 1.97 4 1 O B HOH 318 ? ? O C HOH 230 ? ? 2.00 5 1 NZ C LYS 20 ? ? O C HOH 202 ? ? 2.03 6 1 OE1 D GLU 42 ? ? O D HOH 201 ? ? 2.11 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 NZ D LYS 5 ? ? 1_555 OE1 D GLU 42 ? ? 5_555 1.38 2 1 NZ D LYS 5 ? ? 1_555 CD D GLU 42 ? ? 5_555 1.47 3 1 NZ D LYS 5 ? ? 1_555 OE2 D GLU 42 ? ? 5_555 1.90 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id D _pdbx_validate_torsion.auth_seq_id 21 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 58.50 _pdbx_validate_torsion.psi 18.92 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id VAL _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 23 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id B _pdbx_validate_main_chain_plane.improper_torsion_angle 10.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A PRO 0 ? A PRO 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A PRO 2 ? A PRO 4 5 1 Y 1 A GLY 3 ? A GLY 5 6 1 Y 1 A LYS 4 ? A LYS 6 7 1 Y 1 B GLY -1 ? B GLY 1 8 1 Y 1 B PRO 0 ? B PRO 2 9 1 Y 1 B MET 1 ? B MET 3 10 1 Y 1 B PRO 2 ? B PRO 4 11 1 Y 1 B GLY 3 ? B GLY 5 12 1 Y 1 B LYS 4 ? B LYS 6 13 1 Y 1 C GLY -1 ? C GLY 1 14 1 Y 1 C PRO 0 ? C PRO 2 15 1 Y 1 C MET 1 ? C MET 3 16 1 Y 1 C PRO 2 ? C PRO 4 17 1 Y 1 C GLY 3 ? C GLY 5 18 1 Y 1 C LYS 4 ? C LYS 6 19 1 Y 1 D GLY -1 ? D GLY 1 20 1 Y 1 D PRO 0 ? D PRO 2 21 1 Y 1 D MET 1 ? D MET 3 22 1 Y 1 D PRO 2 ? D PRO 4 23 1 Y 1 D GLY 3 ? D GLY 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 HOH O O N N 86 HOH H1 H N N 87 HOH H2 H N N 88 LYS N N N N 89 LYS CA C N S 90 LYS C C N N 91 LYS O O N N 92 LYS CB C N N 93 LYS CG C N N 94 LYS CD C N N 95 LYS CE C N N 96 LYS NZ N N N 97 LYS OXT O N N 98 LYS H H N N 99 LYS H2 H N N 100 LYS HA H N N 101 LYS HB2 H N N 102 LYS HB3 H N N 103 LYS HG2 H N N 104 LYS HG3 H N N 105 LYS HD2 H N N 106 LYS HD3 H N N 107 LYS HE2 H N N 108 LYS HE3 H N N 109 LYS HZ1 H N N 110 LYS HZ2 H N N 111 LYS HZ3 H N N 112 LYS HXT H N N 113 MET N N N N 114 MET CA C N S 115 MET C C N N 116 MET O O N N 117 MET CB C N N 118 MET CG C N N 119 MET SD S N N 120 MET CE C N N 121 MET OXT O N N 122 MET H H N N 123 MET H2 H N N 124 MET HA H N N 125 MET HB2 H N N 126 MET HB3 H N N 127 MET HG2 H N N 128 MET HG3 H N N 129 MET HE1 H N N 130 MET HE2 H N N 131 MET HE3 H N N 132 MET HXT H N N 133 MLA C1 C N N 134 MLA O1A O N N 135 MLA O1B O N N 136 MLA C2 C N N 137 MLA C3 C N N 138 MLA O3A O N N 139 MLA O3B O N N 140 MLA H1A H N N 141 MLA HC21 H N N 142 MLA HC22 H N N 143 MLA H3B H N N 144 PRO N N N N 145 PRO CA C N S 146 PRO C C N N 147 PRO O O N N 148 PRO CB C N N 149 PRO CG C N N 150 PRO CD C N N 151 PRO OXT O N N 152 PRO H H N N 153 PRO HA H N N 154 PRO HB2 H N N 155 PRO HB3 H N N 156 PRO HG2 H N N 157 PRO HG3 H N N 158 PRO HD2 H N N 159 PRO HD3 H N N 160 PRO HXT H N N 161 VAL N N N N 162 VAL CA C N S 163 VAL C C N N 164 VAL O O N N 165 VAL CB C N N 166 VAL CG1 C N N 167 VAL CG2 C N N 168 VAL OXT O N N 169 VAL H H N N 170 VAL H2 H N N 171 VAL HA H N N 172 VAL HB H N N 173 VAL HG11 H N N 174 VAL HG12 H N N 175 VAL HG13 H N N 176 VAL HG21 H N N 177 VAL HG22 H N N 178 VAL HG23 H N N 179 VAL HXT H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 HOH O H1 sing N N 81 HOH O H2 sing N N 82 LYS N CA sing N N 83 LYS N H sing N N 84 LYS N H2 sing N N 85 LYS CA C sing N N 86 LYS CA CB sing N N 87 LYS CA HA sing N N 88 LYS C O doub N N 89 LYS C OXT sing N N 90 LYS CB CG sing N N 91 LYS CB HB2 sing N N 92 LYS CB HB3 sing N N 93 LYS CG CD sing N N 94 LYS CG HG2 sing N N 95 LYS CG HG3 sing N N 96 LYS CD CE sing N N 97 LYS CD HD2 sing N N 98 LYS CD HD3 sing N N 99 LYS CE NZ sing N N 100 LYS CE HE2 sing N N 101 LYS CE HE3 sing N N 102 LYS NZ HZ1 sing N N 103 LYS NZ HZ2 sing N N 104 LYS NZ HZ3 sing N N 105 LYS OXT HXT sing N N 106 MET N CA sing N N 107 MET N H sing N N 108 MET N H2 sing N N 109 MET CA C sing N N 110 MET CA CB sing N N 111 MET CA HA sing N N 112 MET C O doub N N 113 MET C OXT sing N N 114 MET CB CG sing N N 115 MET CB HB2 sing N N 116 MET CB HB3 sing N N 117 MET CG SD sing N N 118 MET CG HG2 sing N N 119 MET CG HG3 sing N N 120 MET SD CE sing N N 121 MET CE HE1 sing N N 122 MET CE HE2 sing N N 123 MET CE HE3 sing N N 124 MET OXT HXT sing N N 125 MLA C1 O1A sing N N 126 MLA C1 O1B doub N N 127 MLA C1 C2 sing N N 128 MLA O1A H1A sing N N 129 MLA C2 C3 sing N N 130 MLA C2 HC21 sing N N 131 MLA C2 HC22 sing N N 132 MLA C3 O3A doub N N 133 MLA C3 O3B sing N N 134 MLA O3B H3B sing N N 135 PRO N CA sing N N 136 PRO N CD sing N N 137 PRO N H sing N N 138 PRO CA C sing N N 139 PRO CA CB sing N N 140 PRO CA HA sing N N 141 PRO C O doub N N 142 PRO C OXT sing N N 143 PRO CB CG sing N N 144 PRO CB HB2 sing N N 145 PRO CB HB3 sing N N 146 PRO CG CD sing N N 147 PRO CG HG2 sing N N 148 PRO CG HG3 sing N N 149 PRO CD HD2 sing N N 150 PRO CD HD3 sing N N 151 PRO OXT HXT sing N N 152 VAL N CA sing N N 153 VAL N H sing N N 154 VAL N H2 sing N N 155 VAL CA C sing N N 156 VAL CA CB sing N N 157 VAL CA HA sing N N 158 VAL C O doub N N 159 VAL C OXT sing N N 160 VAL CB CG1 sing N N 161 VAL CB CG2 sing N N 162 VAL CB HB sing N N 163 VAL CG1 HG11 sing N N 164 VAL CG1 HG12 sing N N 165 VAL CG1 HG13 sing N N 166 VAL CG2 HG21 sing N N 167 VAL CG2 HG22 sing N N 168 VAL CG2 HG23 sing N N 169 VAL OXT HXT sing N N 170 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 18H01328 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONIC ACID' MLA 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7DXX _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #