HEADER HYDROLASE 28-JAN-21 7E0V TITLE GDPD FROM PYROCOCCUS FURIOSUS DSM 3638 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS DSM 3638; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638; SOURCE 5 GENE: PF2003; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCEROPHOSPHATE PHOSPHODIESTERASE, HYDROLYSIS, KEYWDS 2 GLYCEROPHOSPHORYLCHOLINE, LYSOPHOSPHORYLCHOLINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.WANG,J.WANG,F.H.WANG REVDAT 2 29-NOV-23 7E0V 1 REMARK REVDAT 1 09-FEB-22 7E0V 0 JRNL AUTH Y.H.WANG,J.WANG,F.H.WANG JRNL TITL CRYSTAL STRUCTURE OF BOMGL, A MONOACYLGLYCEROL LIPASE FROM JRNL TITL 2 MARINE BACILLUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 68363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.4400 - 3.9800 0.98 4953 145 0.1551 0.1867 REMARK 3 2 3.9800 - 3.1600 0.99 4883 148 0.1556 0.1890 REMARK 3 3 3.1600 - 2.7600 0.99 4831 151 0.1614 0.2102 REMARK 3 4 2.7600 - 2.5100 0.98 4842 143 0.1562 0.1864 REMARK 3 5 2.5100 - 2.3300 0.98 4765 144 0.1493 0.1793 REMARK 3 6 2.3300 - 2.1900 0.98 4780 139 0.1471 0.1834 REMARK 3 7 2.1900 - 2.0800 0.98 4781 145 0.1454 0.1661 REMARK 3 8 2.0800 - 1.9900 0.98 4741 149 0.1470 0.1802 REMARK 3 9 1.9900 - 1.9100 0.97 4728 141 0.1541 0.2178 REMARK 3 10 1.9100 - 1.8500 0.97 4723 150 0.1605 0.1915 REMARK 3 11 1.8500 - 1.7900 0.97 4726 134 0.1694 0.2204 REMARK 3 12 1.7900 - 1.7400 0.92 4491 136 0.1830 0.2097 REMARK 3 13 1.7400 - 1.6900 0.95 4619 143 0.2028 0.2214 REMARK 3 14 1.6900 - 1.6500 0.93 4500 132 0.2325 0.2564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.146 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4130 REMARK 3 ANGLE : 1.430 5571 REMARK 3 CHIRALITY : 0.087 638 REMARK 3 PLANARITY : 0.017 705 REMARK 3 DIHEDRAL : 5.878 546 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4028 4.4412 3.9933 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1704 REMARK 3 T33: 0.1994 T12: 0.0250 REMARK 3 T13: -0.0020 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.4760 L22: 1.4543 REMARK 3 L33: 1.7853 L12: -0.3014 REMARK 3 L13: 0.2487 L23: -0.0344 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.0245 S13: -0.0458 REMARK 3 S21: 0.0635 S22: 0.0192 S23: -0.1509 REMARK 3 S31: 0.1448 S32: 0.1511 S33: -0.0477 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4048 9.5786 -7.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1536 REMARK 3 T33: 0.1386 T12: 0.0022 REMARK 3 T13: 0.0064 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.8164 L22: 1.5335 REMARK 3 L33: 0.9104 L12: -0.0061 REMARK 3 L13: 0.2882 L23: 0.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.1834 S13: 0.0595 REMARK 3 S21: -0.1466 S22: -0.0044 S23: 0.0283 REMARK 3 S31: -0.0075 S32: -0.0017 S33: -0.0202 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3136 -9.1147 -50.5198 REMARK 3 T TENSOR REMARK 3 T11: 0.2406 T22: 0.3719 REMARK 3 T33: 0.2527 T12: -0.0718 REMARK 3 T13: -0.0386 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.6274 L22: 1.9832 REMARK 3 L33: 1.7023 L12: 0.6304 REMARK 3 L13: -0.1496 L23: -0.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.1482 S12: 0.4242 S13: 0.1361 REMARK 3 S21: -0.3067 S22: 0.2292 S23: 0.3202 REMARK 3 S31: 0.1701 S32: -0.1233 S33: -0.0627 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 95 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8721 -2.4892 -39.9893 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.1783 REMARK 3 T33: 0.1838 T12: 0.0035 REMARK 3 T13: 0.0178 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.0247 L22: 1.5278 REMARK 3 L33: 0.9689 L12: 0.7126 REMARK 3 L13: -0.0146 L23: -0.1596 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0733 S13: 0.2016 REMARK 3 S21: -0.0151 S22: 0.0452 S23: 0.1311 REMARK 3 S31: -0.0201 S32: -0.0492 S33: -0.0622 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1300020545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68423 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 66.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.5), 25% W/V PEG3350, REMARK 280 0.2M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 LEU A 254 REMARK 465 GLU A 255 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 226 CE NZ REMARK 470 LEU C 254 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 83 O HOH A 301 1.54 REMARK 500 OE1 GLU A 79 O HOH A 301 1.62 REMARK 500 O HOH A 461 O HOH A 497 2.00 REMARK 500 O HOH A 463 O HOH A 474 2.03 REMARK 500 O HOH A 361 O HOH A 406 2.03 REMARK 500 O HOH C 486 O HOH C 491 2.11 REMARK 500 O HOH C 318 O HOH C 440 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 502 O HOH A 513 2445 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 26 CB GLU C 26 CG -0.116 REMARK 500 ARG C 132 CG ARG C 132 CD -0.289 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 20 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 TYR C 20 CB - CA - C ANGL. DEV. = 13.6 DEGREES REMARK 500 TYR C 20 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 20 69.78 -162.00 REMARK 500 ASP A 52 30.93 -99.21 REMARK 500 ASN A 53 34.46 71.49 REMARK 500 MET A 58 137.54 -171.20 REMARK 500 ASN A 128 41.06 -141.75 REMARK 500 ASN A 129 76.45 65.14 REMARK 500 TYR C 20 67.87 -163.65 REMARK 500 MET C 58 133.34 -171.33 REMARK 500 LYS C 82 1.38 -68.47 REMARK 500 ASN C 129 77.38 65.86 REMARK 500 ARG C 253 111.81 -162.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 20 0.07 SIDE CHAIN REMARK 500 TYR C 20 0.09 SIDE CHAIN REMARK 500 ARG C 91 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 494 DISTANCE = 5.91 ANGSTROMS DBREF 7E0V A 1 253 UNP Q8TZI9 Q8TZI9_PYRFU 1 253 DBREF 7E0V C 1 253 UNP Q8TZI9 Q8TZI9_PYRFU 1 253 SEQADV 7E0V LEU A 254 UNP Q8TZI9 EXPRESSION TAG SEQADV 7E0V GLU A 255 UNP Q8TZI9 EXPRESSION TAG SEQADV 7E0V LEU C 254 UNP Q8TZI9 EXPRESSION TAG SEQADV 7E0V GLU C 255 UNP Q8TZI9 EXPRESSION TAG SEQRES 1 A 255 MET VAL GLY ASN PRO MET TRP GLU ARG ASP LYS ILE ILE SEQRES 2 A 255 VAL LEU GLY HIS ARG GLY TYR MET ALA LYS TYR PRO GLU SEQRES 3 A 255 ASN SER LEU LEU SER ILE ARG LYS ALA ILE GLU ALA GLY SEQRES 4 A 255 ALA ASP GLY VAL GLU ILE ASP VAL TRP LEU SER LYS ASP SEQRES 5 A 255 ASN LYS VAL ILE LEU MET HIS ASP GLU THR ILE ASP ARG SEQRES 6 A 255 THR SER ASN LEU LYS GLY ARG GLN LYS GLU MET THR LEU SEQRES 7 A 255 GLU GLU LEU LYS LYS ALA ASN ILE GLY MET GLY GLU ARG SEQRES 8 A 255 ILE PRO THR LEU GLU GLU VAL PHE GLU ILE LEU PRO LYS SEQRES 9 A 255 ASP ALA LEU LEU ASN ILE GLU ILE LYS ASP ARG ASP ALA SEQRES 10 A 255 ALA LYS GLU VAL ALA ARG ILE VAL SER GLU ASN ASN PRO SEQRES 11 A 255 GLU ARG VAL MET ILE SER SER PHE ASP ILE GLU ALA LEU SEQRES 12 A 255 ARG GLU TYR ARG LYS TYR ASP ASP THR THR ILE MET GLY SEQRES 13 A 255 LEU LEU VAL ASP LYS GLU GLU THR VAL PRO LEU ILE PRO SEQRES 14 A 255 LYS LEU LYS GLU LYS LEU ASN LEU TRP SER VAL ASN VAL SEQRES 15 A 255 PRO MET GLU ALA ILE PRO ILE ILE GLY PHE GLU LYS THR SEQRES 16 A 255 TYR GLN ALA ILE LYS TRP VAL ARG SER LEU GLY LEU LYS SEQRES 17 A 255 ILE VAL LEU TRP THR GLU ASP ASP LYS LEU PHE TYR VAL SEQRES 18 A 255 ASP GLU ASN LEU LYS ARG LEU LEU GLY MET PHE GLU VAL SEQRES 19 A 255 VAL ILE ALA ASN ASP VAL GLU ARG MET VAL SER TYR LEU SEQRES 20 A 255 SER SER LEU GLY ILE ARG LEU GLU SEQRES 1 C 255 MET VAL GLY ASN PRO MET TRP GLU ARG ASP LYS ILE ILE SEQRES 2 C 255 VAL LEU GLY HIS ARG GLY TYR MET ALA LYS TYR PRO GLU SEQRES 3 C 255 ASN SER LEU LEU SER ILE ARG LYS ALA ILE GLU ALA GLY SEQRES 4 C 255 ALA ASP GLY VAL GLU ILE ASP VAL TRP LEU SER LYS ASP SEQRES 5 C 255 ASN LYS VAL ILE LEU MET HIS ASP GLU THR ILE ASP ARG SEQRES 6 C 255 THR SER ASN LEU LYS GLY ARG GLN LYS GLU MET THR LEU SEQRES 7 C 255 GLU GLU LEU LYS LYS ALA ASN ILE GLY MET GLY GLU ARG SEQRES 8 C 255 ILE PRO THR LEU GLU GLU VAL PHE GLU ILE LEU PRO LYS SEQRES 9 C 255 ASP ALA LEU LEU ASN ILE GLU ILE LYS ASP ARG ASP ALA SEQRES 10 C 255 ALA LYS GLU VAL ALA ARG ILE VAL SER GLU ASN ASN PRO SEQRES 11 C 255 GLU ARG VAL MET ILE SER SER PHE ASP ILE GLU ALA LEU SEQRES 12 C 255 ARG GLU TYR ARG LYS TYR ASP ASP THR THR ILE MET GLY SEQRES 13 C 255 LEU LEU VAL ASP LYS GLU GLU THR VAL PRO LEU ILE PRO SEQRES 14 C 255 LYS LEU LYS GLU LYS LEU ASN LEU TRP SER VAL ASN VAL SEQRES 15 C 255 PRO MET GLU ALA ILE PRO ILE ILE GLY PHE GLU LYS THR SEQRES 16 C 255 TYR GLN ALA ILE LYS TRP VAL ARG SER LEU GLY LEU LYS SEQRES 17 C 255 ILE VAL LEU TRP THR GLU ASP ASP LYS LEU PHE TYR VAL SEQRES 18 C 255 ASP GLU ASN LEU LYS ARG LEU LEU GLY MET PHE GLU VAL SEQRES 19 C 255 VAL ILE ALA ASN ASP VAL GLU ARG MET VAL SER TYR LEU SEQRES 20 C 255 SER SER LEU GLY ILE ARG LEU GLU FORMUL 3 HOH *415(H2 O) HELIX 1 AA1 SER A 28 ALA A 38 1 11 HELIX 2 AA2 ARG A 72 MET A 76 5 5 HELIX 3 AA3 THR A 77 LYS A 82 1 6 HELIX 4 AA4 THR A 94 LEU A 102 1 9 HELIX 5 AA5 ASP A 114 ASP A 116 5 3 HELIX 6 AA6 ALA A 117 GLU A 127 1 11 HELIX 7 AA7 ASN A 128 GLU A 131 5 4 HELIX 8 AA8 ASP A 139 LYS A 148 1 10 HELIX 9 AA9 LYS A 161 PRO A 166 5 6 HELIX 10 AB1 LEU A 167 ASN A 176 1 10 HELIX 11 AB2 GLU A 185 GLY A 191 1 7 HELIX 12 AB3 GLY A 191 LEU A 205 1 15 HELIX 13 AB4 ASP A 216 VAL A 221 1 6 HELIX 14 AB5 GLU A 223 LEU A 228 1 6 HELIX 15 AB6 ASP A 239 LEU A 250 1 12 HELIX 16 AB7 SER C 28 ALA C 38 1 11 HELIX 17 AB8 ARG C 72 MET C 76 5 5 HELIX 18 AB9 THR C 77 LYS C 82 1 6 HELIX 19 AC1 THR C 94 LEU C 102 1 9 HELIX 20 AC2 ASP C 114 ASP C 116 5 3 HELIX 21 AC3 ALA C 117 GLU C 127 1 11 HELIX 22 AC4 ASN C 128 GLU C 131 5 4 HELIX 23 AC5 ASP C 139 LYS C 148 1 10 HELIX 24 AC6 LYS C 161 PRO C 166 5 6 HELIX 25 AC7 LEU C 167 ASN C 176 1 10 HELIX 26 AC8 GLU C 185 GLY C 191 1 7 HELIX 27 AC9 GLY C 191 LEU C 205 1 15 HELIX 28 AD1 ASP C 216 VAL C 221 1 6 HELIX 29 AD2 GLU C 223 LEU C 228 1 6 HELIX 30 AD3 ASP C 239 LEU C 250 1 12 SHEET 1 AA110 VAL A 55 LEU A 57 0 SHEET 2 AA110 GLY A 42 LEU A 49 -1 N TRP A 48 O ILE A 56 SHEET 3 AA110 LEU A 107 ILE A 112 1 O GLU A 111 N ILE A 45 SHEET 4 AA110 VAL A 133 SER A 137 1 O SER A 136 N ILE A 112 SHEET 5 AA110 ILE A 154 LEU A 158 1 O ILE A 154 N ILE A 135 SHEET 6 AA110 SER A 179 PRO A 183 1 O ASN A 181 N LEU A 157 SHEET 7 AA110 LYS A 208 TRP A 212 1 O VAL A 210 N VAL A 182 SHEET 8 AA110 VAL A 234 ALA A 237 1 O ILE A 236 N LEU A 211 SHEET 9 AA110 ILE A 13 GLY A 16 1 N ILE A 13 O VAL A 235 SHEET 10 AA110 GLY A 42 LEU A 49 1 O GLU A 44 N GLY A 16 SHEET 1 AA210 VAL C 55 LEU C 57 0 SHEET 2 AA210 GLY C 42 LEU C 49 -1 N TRP C 48 O ILE C 56 SHEET 3 AA210 LEU C 107 ILE C 112 1 O GLU C 111 N ILE C 45 SHEET 4 AA210 VAL C 133 SER C 137 1 O SER C 136 N ILE C 112 SHEET 5 AA210 ILE C 154 LEU C 158 1 O ILE C 154 N ILE C 135 SHEET 6 AA210 SER C 179 PRO C 183 1 O ASN C 181 N LEU C 157 SHEET 7 AA210 LYS C 208 TRP C 212 1 O VAL C 210 N VAL C 182 SHEET 8 AA210 VAL C 234 ALA C 237 1 O ILE C 236 N LEU C 211 SHEET 9 AA210 ILE C 13 GLY C 16 1 N ILE C 13 O VAL C 235 SHEET 10 AA210 GLY C 42 LEU C 49 1 O GLU C 44 N GLY C 16 CRYST1 70.330 45.870 96.660 90.00 109.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014219 0.000000 0.004936 0.00000 SCALE2 0.000000 0.021801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010951 0.00000