HEADER VIRAL PROTEIN 01-FEB-21 7E1K TITLE CRYSTAL STRUCTURE OF PR55GAG-MATRIX DOMAIN IN COMPLEX WITH IP6 IN TITLE 2 SPACE GROUP R32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MATRIX PROTEIN P17,NUCLEOCAPSID PROTEIN P7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1, MATRIX PROTEIN, MYO-INOSITOL HEXAKISPHOSPHATE, SERIAL KEYWDS 2 FEMTOSECOND X-RAY CRYSTALLOGRAPHY, AMBIENT-TEMPERATURE KEYWDS 3 CRYSTALLOGRAPHY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.DEMIRCI,T.SENDA,E.DESTAN REVDAT 2 27-MAR-24 7E1K 1 REMARK REVDAT 1 04-AUG-21 7E1K 0 JRNL AUTH H.DEMIRCI,T.SENDA,E.DESTAN JRNL TITL CRYSTAL STRUCTURE OF PR55GAG-MATRIX DOMAIN IN COMPLEX WITH JRNL TITL 2 IP6 IN SPACE GROUP R32 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-3318 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0000 - 3.8093 0.99 3152 182 0.2063 0.2685 REMARK 3 2 3.8093 - 3.0239 1.00 3080 137 0.2129 0.2646 REMARK 3 3 3.0239 - 2.6417 1.00 3051 153 0.2495 0.2766 REMARK 3 4 2.6417 - 2.4002 1.00 3027 149 0.2544 0.3393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1706 73.1590 21.6768 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.3827 REMARK 3 T33: 0.5083 T12: 0.0473 REMARK 3 T13: 0.0855 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.0354 L22: 0.2111 REMARK 3 L33: 0.7073 L12: -0.1273 REMARK 3 L13: -0.3136 L23: 0.1928 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: 0.4988 S13: -0.2380 REMARK 3 S21: -0.1332 S22: -0.3038 S23: -0.4939 REMARK 3 S31: -0.4790 S32: 0.3191 S33: -0.0090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7548 62.6153 21.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.4296 T22: 0.2697 REMARK 3 T33: 0.4840 T12: 0.0061 REMARK 3 T13: 0.0532 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.6812 L22: 0.1524 REMARK 3 L33: 0.7198 L12: 0.0891 REMARK 3 L13: -0.3812 L23: 0.2367 REMARK 3 S TENSOR REMARK 3 S11: -0.6828 S12: 0.6895 S13: -0.6542 REMARK 3 S21: -0.6076 S22: 0.8066 S23: -0.1028 REMARK 3 S31: 0.7182 S32: -0.4948 S33: 0.0276 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8795 78.3370 18.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.3930 T22: 0.3401 REMARK 3 T33: 0.2786 T12: -0.0128 REMARK 3 T13: 0.0410 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.6844 L22: 0.8203 REMARK 3 L33: 0.1796 L12: -0.1872 REMARK 3 L13: 0.2037 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.3720 S13: -0.5250 REMARK 3 S21: -0.7178 S22: 0.0013 S23: 0.6681 REMARK 3 S31: 0.1606 S32: 0.1506 S33: 0.0305 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0061 81.8772 30.7974 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.2230 REMARK 3 T33: 0.4136 T12: 0.0239 REMARK 3 T13: 0.0173 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.7397 L22: 0.8690 REMARK 3 L33: 0.5519 L12: -0.6851 REMARK 3 L13: -0.5238 L23: 0.2715 REMARK 3 S TENSOR REMARK 3 S11: 0.4532 S12: -0.1990 S13: 0.4202 REMARK 3 S21: 0.2276 S22: -0.2530 S23: -0.0926 REMARK 3 S31: -0.5636 S32: 0.4809 S33: 0.0116 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8569 73.0202 29.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.2639 REMARK 3 T33: 0.2396 T12: 0.0090 REMARK 3 T13: -0.0253 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.4334 L22: 0.8769 REMARK 3 L33: 0.0753 L12: -0.4159 REMARK 3 L13: -0.0594 L23: -0.3144 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: -0.2473 S13: -0.4642 REMARK 3 S21: 0.2107 S22: 0.0173 S23: 0.1371 REMARK 3 S31: 0.0869 S32: -0.1459 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3501 65.4040 32.3400 REMARK 3 T TENSOR REMARK 3 T11: 0.2840 T22: 0.3834 REMARK 3 T33: 0.4723 T12: 0.1003 REMARK 3 T13: -0.0909 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 0.5007 L22: 0.2913 REMARK 3 L33: 1.8872 L12: 0.3580 REMARK 3 L13: -0.1989 L23: 0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.1572 S12: -0.2047 S13: 0.3130 REMARK 3 S21: 0.0168 S22: -0.2726 S23: -0.9391 REMARK 3 S31: 0.8289 S32: 0.3852 S33: -0.0545 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7562 66.2130 37.1825 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.3114 REMARK 3 T33: 0.2489 T12: 0.0432 REMARK 3 T13: 0.0732 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.1834 L22: 0.0244 REMARK 3 L33: 0.2736 L12: -0.0404 REMARK 3 L13: 0.2345 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: 0.2404 S12: -0.0093 S13: 0.1434 REMARK 3 S21: 0.1242 S22: 0.0388 S23: -0.0913 REMARK 3 S31: 0.0922 S32: 0.5220 S33: 0.0248 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4194 74.5203 53.6288 REMARK 3 T TENSOR REMARK 3 T11: 0.5949 T22: 0.5973 REMARK 3 T33: 0.6246 T12: -0.0574 REMARK 3 T13: 0.0258 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.7755 L22: 0.4899 REMARK 3 L33: 0.2173 L12: -0.4939 REMARK 3 L13: -0.2839 L23: -0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.1942 S12: -0.0063 S13: 0.0133 REMARK 3 S21: 0.2632 S22: 0.0218 S23: -0.3450 REMARK 3 S31: 0.3788 S32: 0.3110 S33: -0.0039 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.8126 56.7822 68.4095 REMARK 3 T TENSOR REMARK 3 T11: 0.4453 T22: 0.3855 REMARK 3 T33: 0.5631 T12: -0.0246 REMARK 3 T13: 0.0419 T23: 0.1158 REMARK 3 L TENSOR REMARK 3 L11: 1.0021 L22: 0.0825 REMARK 3 L33: 0.7467 L12: -0.2060 REMARK 3 L13: 0.0912 L23: -0.2437 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.2680 S13: -0.9260 REMARK 3 S21: 0.4663 S22: 0.3794 S23: 1.2146 REMARK 3 S31: 0.5330 S32: -0.0568 S33: 0.0477 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6831 59.5320 68.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.3325 T22: 0.3712 REMARK 3 T33: 0.2791 T12: 0.0380 REMARK 3 T13: 0.0179 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.7584 L22: 0.4193 REMARK 3 L33: 0.8697 L12: 0.3289 REMARK 3 L13: 0.3555 L23: 0.2924 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -1.4198 S13: 0.0072 REMARK 3 S21: -0.2779 S22: 0.2376 S23: 0.5253 REMARK 3 S31: 0.6422 S32: 0.5477 S33: 0.0390 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.3279 70.8419 71.2255 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.2969 REMARK 3 T33: 0.2259 T12: 0.0335 REMARK 3 T13: -0.0451 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.5405 L22: 0.7407 REMARK 3 L33: 0.2827 L12: -0.8394 REMARK 3 L13: 0.5955 L23: -0.4932 REMARK 3 S TENSOR REMARK 3 S11: -0.4422 S12: -0.4557 S13: 0.4025 REMARK 3 S21: 0.1272 S22: 0.0156 S23: -0.4334 REMARK 3 S31: -0.1177 S32: -0.1471 S33: -0.0857 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.2135 71.1758 59.4386 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.3249 REMARK 3 T33: 0.3230 T12: -0.0128 REMARK 3 T13: -0.0484 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.4476 L22: 0.3608 REMARK 3 L33: 0.4508 L12: -0.0065 REMARK 3 L13: 0.1672 L23: -0.2530 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0540 S13: 0.2963 REMARK 3 S21: -0.0056 S22: 0.0012 S23: 0.8079 REMARK 3 S31: -0.0380 S32: 0.0446 S33: 0.0015 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.6523 70.1696 60.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.2448 REMARK 3 T33: 0.3272 T12: -0.0113 REMARK 3 T13: -0.0216 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.4094 L22: 0.2894 REMARK 3 L33: 0.0777 L12: 0.1046 REMARK 3 L13: -0.2881 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: 0.0921 S13: 0.3541 REMARK 3 S21: -0.2224 S22: 0.1454 S23: -0.1382 REMARK 3 S31: 0.1217 S32: -0.0532 S33: -0.0004 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.1400 55.4986 58.0751 REMARK 3 T TENSOR REMARK 3 T11: 0.7231 T22: 0.3002 REMARK 3 T33: 0.5615 T12: 0.1345 REMARK 3 T13: 0.1024 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.5792 L22: 0.3176 REMARK 3 L33: 0.6924 L12: -0.3597 REMARK 3 L13: -0.1476 L23: -0.1629 REMARK 3 S TENSOR REMARK 3 S11: 0.4429 S12: -0.3388 S13: -0.2222 REMARK 3 S21: -0.2659 S22: -0.5897 S23: 0.3776 REMARK 3 S31: 0.7311 S32: 0.1434 S33: 0.0167 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0984 62.3931 53.3492 REMARK 3 T TENSOR REMARK 3 T11: 0.4432 T22: 0.3768 REMARK 3 T33: 0.3173 T12: 0.0196 REMARK 3 T13: 0.0517 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1553 L22: 0.0315 REMARK 3 L33: 0.3323 L12: 0.0931 REMARK 3 L13: 0.1833 L23: 0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.4517 S12: -0.0720 S13: -0.0997 REMARK 3 S21: 0.1781 S22: 0.5087 S23: 0.1000 REMARK 3 S31: 0.4915 S32: -0.2152 S33: 0.0050 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.9188 64.7771 37.0279 REMARK 3 T TENSOR REMARK 3 T11: 0.5747 T22: 0.4994 REMARK 3 T33: 0.5090 T12: 0.0055 REMARK 3 T13: -0.0250 T23: 0.2870 REMARK 3 L TENSOR REMARK 3 L11: 0.4058 L22: 0.4000 REMARK 3 L33: 0.0784 L12: -0.3825 REMARK 3 L13: -0.1092 L23: 0.1303 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: 0.1290 S13: 1.2834 REMARK 3 S21: 0.3406 S22: 0.0199 S23: 0.0466 REMARK 3 S31: 1.0596 S32: 1.1687 S33: 0.0056 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.21700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.20 REMARK 200 R MERGE FOR SHELL (I) : 1.70700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 AND 100 MM MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 48.91400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.24051 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 58.76567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 48.91400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.24051 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 58.76567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 48.91400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.24051 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 58.76567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 48.91400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.24051 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.76567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 48.91400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.24051 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.76567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 48.91400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.24051 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.76567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 56.48102 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 117.53133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 56.48102 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 117.53133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 56.48102 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 117.53133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 56.48102 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 117.53133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 56.48102 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 117.53133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 56.48102 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 117.53133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 122 REMARK 465 GLY B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 42 CZ NH1 NH2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 470 GLY B 122 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 94 OE1 GLU B 98 1.81 REMARK 500 O PRO A 22 O HOH A 301 1.93 REMARK 500 N GLY A 23 O HOH A 302 2.02 REMARK 500 OE1 GLU A 105 O HOH A 303 2.05 REMARK 500 O HOH A 325 O HOH A 335 2.06 REMARK 500 O HOH A 343 O HOH A 348 2.09 REMARK 500 NH2 ARG A 19 O HOH A 304 2.11 REMARK 500 O HOH A 332 O HOH A 335 2.14 REMARK 500 O HOH B 320 O HOH B 329 2.16 REMARK 500 O HOH A 334 O HOH A 342 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 102 O42 IHP A 201 11565 1.30 REMARK 500 NZ LYS B 26 O31 IHP A 201 8565 1.33 REMARK 500 CE LYS B 26 O31 IHP A 201 8565 1.67 REMARK 500 CE LYS B 26 P1 IHP A 201 8565 2.01 REMARK 500 NZ LYS B 31 O34 IHP A 201 8565 2.10 REMARK 500 O GLY A 9 NH2 ARG B 3 15454 2.12 REMARK 500 NZ LYS B 31 O15 IHP A 201 8565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 26 CD LYS B 26 CE 0.232 REMARK 500 LYS B 94 CD LYS B 94 CE 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 3 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LYS B 26 CG - CD - CE ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -65.17 -93.83 REMARK 500 ALA A 2 -65.08 -93.83 REMARK 500 ARG A 3 51.34 35.05 REMARK 500 ARG A 3 52.63 34.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 353 DISTANCE = 6.32 ANGSTROMS DBREF 7E1K A 1 122 UNP T2CJ20 T2CJ20_9HIV1 2 123 DBREF 7E1K B 1 122 UNP T2CJ20 T2CJ20_9HIV1 2 123 SEQRES 1 A 122 GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU LEU ASP SEQRES 2 A 122 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 122 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 A 122 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 A 122 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 A 122 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 A 122 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 A 122 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 A 122 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 A 122 ALA ALA ASP THR GLY SEQRES 1 B 122 GLY ALA ARG ALA SER VAL LEU SER GLY GLY GLU LEU ASP SEQRES 2 B 122 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 B 122 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 B 122 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 B 122 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 B 122 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 B 122 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 B 122 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 B 122 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 B 122 ALA ALA ASP THR GLY HET IHP A 201 84 HET IHP B 201 42 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP 2(C6 H18 O24 P6) FORMUL 5 HOH *96(H2 O) HELIX 1 AA1 SER A 8 GLU A 16 1 9 HELIX 2 AA2 LYS A 29 PHE A 43 1 15 HELIX 3 AA3 ASN A 46 GLU A 51 5 6 HELIX 4 AA4 THR A 52 GLN A 64 1 13 HELIX 5 AA5 PRO A 65 LEU A 67 5 3 HELIX 6 AA6 SER A 71 GLN A 89 1 19 HELIX 7 AA7 ASP A 95 ASP A 120 1 26 HELIX 8 AA8 SER B 8 GLU B 16 1 9 HELIX 9 AA9 LYS B 29 PHE B 43 1 15 HELIX 10 AB1 ASN B 46 GLU B 51 5 6 HELIX 11 AB2 THR B 52 GLN B 64 1 13 HELIX 12 AB3 PRO B 65 LEU B 67 5 3 HELIX 13 AB4 SER B 71 ARG B 90 1 20 HELIX 14 AB5 ASP B 95 ASP B 120 1 26 CRYST1 97.828 97.828 176.297 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010222 0.005902 0.000000 0.00000 SCALE2 0.000000 0.011803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005672 0.00000