data_7E4E # _entry.id 7E4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7E4E pdb_00007e4e 10.2210/pdb7e4e/pdb WWPDB D_1300020743 ? ? BMRB 36410 ? 10.13018/BMR36410 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-04-07 2 'Structure model' 1 1 2021-04-21 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.identifier_ORCID' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7E4E _pdbx_database_status.recvd_initial_deposition_date 2021-02-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR solution structures of DNA minidumbbell containing a N1-methyladenine' _pdbx_database_related.db_id 36410 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wan, L.' 1 0000-0003-3663-2678 'Guo, P.' 2 0000-0001-7760-5786 'Lam, S.L.' 3 0000-0001-5368-706X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 22 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms22073633 _citation.pdbx_database_id_PubMed 33807305 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, L.' 1 0000-0003-3663-2678 primary 'Lam, S.L.' 2 ? primary 'Lee, H.K.' 3 ? primary 'Guo, P.' 4 0000-0001-7760-5786 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3') ; 2421.647 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DT)(MA7)(DT)(DT)(DT)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTTATTTA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 MA7 n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'Staphylococcus aureus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1280 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 MA7 'DNA linking' n "1N-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H17 N5 O6 P 1' 346.256 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 MA7 4 4 4 MA7 MA7 A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 9 NA NA A . C 2 NA 1 102 10 NA NA A . D 2 NA 1 103 11 NA NA A . E 2 NA 1 104 12 NA NA A . F 2 NA 1 105 13 NA NA A . G 2 NA 1 106 14 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7E4E _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7E4E _struct.title 'NMR solution structures of DNA minidumbbell containing a N1-methyladenine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7E4E _struct_keywords.text 'DNA minidumbbell, N1-methyladenine, methylation, non-B DNA, Hoogsteen base pair, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7E4E _struct_ref.pdbx_db_accession 7E4E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7E4E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7E4E _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1400 ? 1 MORE -68 ? 1 'SSA (A^2)' 1310 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A MA7 4 P ? ? A DT 3 A MA7 4 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? A MA7 4 "O3'" ? ? ? 1_555 A DT 5 P ? ? A MA7 4 A DT 5 1_555 ? ? ? ? ? ? ? 1.636 ? ? metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 C NA . NA ? ? A DT 2 A NA 102 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc2 metalc ? ? A DT 2 "O5'" ? ? ? 1_555 C NA . NA ? ? A DT 2 A NA 102 1_555 ? ? ? ? ? ? ? 2.486 ? ? metalc3 metalc ? ? A DT 2 "O4'" ? ? ? 1_555 C NA . NA ? ? A DT 2 A NA 102 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc4 metalc ? ? A DT 2 O4 ? ? ? 1_555 G NA . NA ? ? A DT 2 A NA 106 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc5 metalc ? ? A DT 3 OP1 ? ? ? 1_555 F NA . NA ? ? A DT 3 A NA 105 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc6 metalc ? ? A MA7 4 OP1 ? ? ? 1_555 D NA . NA ? ? A MA7 4 A NA 103 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc7 metalc ? ? A MA7 4 "O4'" ? ? ? 1_555 D NA . NA ? ? A MA7 4 A NA 103 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc8 metalc ? ? A MA7 4 OP1 ? ? ? 1_555 F NA . NA ? ? A MA7 4 A NA 105 1_555 ? ? ? ? ? ? ? 2.498 ? ? metalc9 metalc ? ? A MA7 4 OP2 ? ? ? 1_555 F NA . NA ? ? A MA7 4 A NA 105 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc10 metalc ? ? A DT 5 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 5 A NA 103 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc11 metalc ? ? A DT 6 OP1 ? ? ? 1_555 G NA . NA ? ? A DT 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc12 metalc ? ? A DT 6 "O4'" ? ? ? 1_555 G NA . NA ? ? A DT 6 A NA 106 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc13 metalc ? ? A DT 7 OP1 ? ? ? 1_555 B NA . NA ? ? A DT 7 A NA 101 1_555 ? ? ? ? ? ? ? 2.169 ? ? metalc14 metalc ? ? A DT 7 "O3'" ? ? ? 1_555 E NA . NA ? ? A DT 7 A NA 104 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc15 metalc ? ? A DA 8 OP1 ? ? ? 1_555 B NA . NA ? ? A DA 8 A NA 101 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc16 metalc ? ? A DA 8 OP2 ? ? ? 1_555 E NA . NA ? ? A DA 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.224 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A MA7 4 N7 ? ? A DT 1 A MA7 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A MA7 4 N6 ? ? A DT 1 A MA7 4 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A MA7 4 N6 ? ? ? 1_555 A DA 8 N1 ? ? A MA7 4 A DA 8 1_555 ? ? ? ? ? ? 'MA7-DA MISPAIR' ? ? ? hydrog4 hydrog ? ? A DT 5 N3 ? ? ? 1_555 A DA 8 N1 ? ? A DT 5 A DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 5 O4 ? ? ? 1_555 A DA 8 N6 ? ? A DT 5 A DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 "O5'" ? A DT 2 ? A DT 2 ? 1_555 61.9 ? 2 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 "O4'" ? A DT 2 ? A DT 2 ? 1_555 129.6 ? 3 "O5'" ? A DT 2 ? A DT 2 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 "O4'" ? A DT 2 ? A DT 2 ? 1_555 67.8 ? 4 O4 ? A DT 2 ? A DT 2 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DT 6 ? A DT 6 ? 1_555 134.1 ? 5 O4 ? A DT 2 ? A DT 2 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 "O4'" ? A DT 6 ? A DT 6 ? 1_555 108.8 ? 6 OP1 ? A DT 6 ? A DT 6 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 "O4'" ? A DT 6 ? A DT 6 ? 1_555 87.4 ? 7 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A MA7 4 ? A MA7 4 ? 1_555 103.1 ? 8 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A MA7 4 ? A MA7 4 ? 1_555 143.4 ? 9 OP1 ? A MA7 4 ? A MA7 4 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A MA7 4 ? A MA7 4 ? 1_555 62.2 ? 10 OP1 ? A MA7 4 ? A MA7 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O4'" ? A MA7 4 ? A MA7 4 ? 1_555 74.6 ? 11 OP1 ? A MA7 4 ? A MA7 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DT 5 ? A DT 5 ? 1_555 136.5 ? 12 "O4'" ? A MA7 4 ? A MA7 4 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DT 5 ? A DT 5 ? 1_555 85.3 ? 13 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP1 ? A DA 8 ? A DA 8 ? 1_555 133.1 ? 14 "O3'" ? A DT 7 ? A DT 7 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP2 ? A DA 8 ? A DA 8 ? 1_555 63.4 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.87 108.30 2.57 0.30 N 2 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.15 122.90 -3.75 0.60 N 3 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.18 122.90 -3.72 0.60 N 4 1 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 97.74 102.20 -4.46 0.70 N 5 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? "C2'" A DT 6 ? ? 100.99 105.90 -4.91 0.80 N 6 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.08 108.30 5.78 0.30 N 7 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.69 108.30 2.39 0.30 N 8 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.99 122.90 -3.91 0.60 N 9 1 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.29 117.00 -3.71 0.50 N 10 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 111.03 118.60 -7.57 0.60 N 11 2 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.55 108.30 3.25 0.30 N 12 2 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.59 122.30 -3.71 0.60 N 13 2 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.29 122.90 -3.61 0.60 N 14 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.09 122.90 -3.81 0.60 N 15 2 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 97.92 102.20 -4.28 0.70 N 16 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.86 108.30 5.56 0.30 N 17 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.43 108.30 2.13 0.30 N 18 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.08 122.90 -3.82 0.60 N 19 2 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.43 117.00 -3.57 0.50 N 20 2 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 111.34 118.60 -7.26 0.60 N 21 3 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.17 122.90 -3.73 0.60 N 22 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.30 108.30 5.00 0.30 N 23 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.29 122.90 -3.61 0.60 N 24 3 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 110.34 108.30 2.04 0.30 N 25 3 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 112.45 118.60 -6.15 0.60 N 26 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.29 108.30 2.99 0.30 N 27 4 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.66 108.30 2.36 0.30 N 28 4 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.21 122.90 -3.69 0.60 N 29 4 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 97.04 102.20 -5.16 0.70 N 30 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 112.47 108.30 4.17 0.30 N 31 4 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 104.55 109.40 -4.85 0.80 N 32 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.58 108.30 2.28 0.30 N 33 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.18 122.90 -3.72 0.60 N 34 4 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.39 117.00 -3.61 0.50 N 35 4 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 111.35 118.60 -7.25 0.60 N 36 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.39 108.30 4.09 0.30 N 37 5 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.36 108.30 2.06 0.30 N 38 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 119.02 122.90 -3.88 0.60 N 39 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.29 122.90 -3.61 0.60 N 40 5 "C4'" A DT 6 ? ? "C3'" A DT 6 ? ? "C2'" A DT 6 ? ? 96.80 102.20 -5.40 0.70 N 41 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.37 108.30 5.07 0.30 N 42 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.52 108.30 2.22 0.30 N 43 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 119.11 122.90 -3.79 0.60 N 44 5 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.25 117.00 -3.75 0.50 N 45 5 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 111.05 118.60 -7.55 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 6 ? ? 0.065 'SIDE CHAIN' 2 1 DA A 8 ? ? 0.066 'SIDE CHAIN' 3 4 DT A 6 ? ? 0.078 'SIDE CHAIN' 4 5 DT A 6 ? ? 0.075 'SIDE CHAIN' # _pdbx_entry_details.entry_id 7E4E _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7E4E _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7E4E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.5 mM NA DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3'), 10 mM NA sodium phosphate, 0.02 mM NA DSS, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*TP*TP*TP*(MA7)P*TP*TP*TP*A)-3') ; 0.5 ? mM NA 1 'sodium phosphate' 10 ? mM NA 1 DSS 0.02 ? mM NA # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 7E4E _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DT OP3 O N N 37 DT P P N N 38 DT OP1 O N N 39 DT OP2 O N N 40 DT "O5'" O N N 41 DT "C5'" C N N 42 DT "C4'" C N R 43 DT "O4'" O N N 44 DT "C3'" C N S 45 DT "O3'" O N N 46 DT "C2'" C N N 47 DT "C1'" C N R 48 DT N1 N N N 49 DT C2 C N N 50 DT O2 O N N 51 DT N3 N N N 52 DT C4 C N N 53 DT O4 O N N 54 DT C5 C N N 55 DT C7 C N N 56 DT C6 C N N 57 DT HOP3 H N N 58 DT HOP2 H N N 59 DT "H5'" H N N 60 DT "H5''" H N N 61 DT "H4'" H N N 62 DT "H3'" H N N 63 DT "HO3'" H N N 64 DT "H2'" H N N 65 DT "H2''" H N N 66 DT "H1'" H N N 67 DT H3 H N N 68 DT H71 H N N 69 DT H72 H N N 70 DT H73 H N N 71 DT H6 H N N 72 MA7 C2 C Y N 73 MA7 C4 C Y N 74 MA7 C5 C Y N 75 MA7 C6 C Y N 76 MA7 C8 C Y N 77 MA7 P P N N 78 MA7 OP1 O N N 79 MA7 OP2 O N N 80 MA7 "O5'" O N N 81 MA7 N9 N Y N 82 MA7 N3 N Y N 83 MA7 N1 N Y N 84 MA7 N6 N N N 85 MA7 N7 N Y N 86 MA7 CN C N N 87 MA7 "C2'" C N N 88 MA7 "C5'" C N N 89 MA7 "C4'" C N R 90 MA7 "O4'" O N N 91 MA7 "C1'" C N R 92 MA7 "C3'" C N S 93 MA7 "O3'" O N N 94 MA7 OP3 O N N 95 MA7 H2 H N N 96 MA7 H8 H N N 97 MA7 HOP2 H N N 98 MA7 H61 H N N 99 MA7 H62 H N N 100 MA7 HN1 H N N 101 MA7 HN2 H N N 102 MA7 HN3 H N N 103 MA7 "H2'" H N N 104 MA7 "H2''" H N N 105 MA7 "H5'" H N N 106 MA7 "H5''" H N N 107 MA7 "H4'" H N N 108 MA7 "H1'" H N N 109 MA7 "H3'" H N N 110 MA7 "HO3'" H N N 111 MA7 HOP3 H N N 112 NA NA NA N N 113 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DT OP3 P sing N N 39 DT OP3 HOP3 sing N N 40 DT P OP1 doub N N 41 DT P OP2 sing N N 42 DT P "O5'" sing N N 43 DT OP2 HOP2 sing N N 44 DT "O5'" "C5'" sing N N 45 DT "C5'" "C4'" sing N N 46 DT "C5'" "H5'" sing N N 47 DT "C5'" "H5''" sing N N 48 DT "C4'" "O4'" sing N N 49 DT "C4'" "C3'" sing N N 50 DT "C4'" "H4'" sing N N 51 DT "O4'" "C1'" sing N N 52 DT "C3'" "O3'" sing N N 53 DT "C3'" "C2'" sing N N 54 DT "C3'" "H3'" sing N N 55 DT "O3'" "HO3'" sing N N 56 DT "C2'" "C1'" sing N N 57 DT "C2'" "H2'" sing N N 58 DT "C2'" "H2''" sing N N 59 DT "C1'" N1 sing N N 60 DT "C1'" "H1'" sing N N 61 DT N1 C2 sing N N 62 DT N1 C6 sing N N 63 DT C2 O2 doub N N 64 DT C2 N3 sing N N 65 DT N3 C4 sing N N 66 DT N3 H3 sing N N 67 DT C4 O4 doub N N 68 DT C4 C5 sing N N 69 DT C5 C7 sing N N 70 DT C5 C6 doub N N 71 DT C7 H71 sing N N 72 DT C7 H72 sing N N 73 DT C7 H73 sing N N 74 DT C6 H6 sing N N 75 MA7 C2 N3 doub Y N 76 MA7 C2 N1 sing Y N 77 MA7 C2 H2 sing N N 78 MA7 C4 C5 doub Y N 79 MA7 C4 N9 sing Y N 80 MA7 C4 N3 sing Y N 81 MA7 C5 C6 sing Y N 82 MA7 C5 N7 sing Y N 83 MA7 C6 N1 doub Y N 84 MA7 C6 N6 sing N N 85 MA7 C8 N9 sing Y N 86 MA7 C8 N7 doub Y N 87 MA7 C8 H8 sing N N 88 MA7 P OP1 doub N N 89 MA7 P OP2 sing N N 90 MA7 P "O5'" sing N N 91 MA7 P OP3 sing N N 92 MA7 OP2 HOP2 sing N N 93 MA7 "O5'" "C5'" sing N N 94 MA7 N9 "C1'" sing N N 95 MA7 N1 CN sing N N 96 MA7 N6 H61 sing N N 97 MA7 N6 H62 sing N N 98 MA7 CN HN1 sing N N 99 MA7 CN HN2 sing N N 100 MA7 CN HN3 sing N N 101 MA7 "C2'" "C1'" sing N N 102 MA7 "C2'" "C3'" sing N N 103 MA7 "C2'" "H2'" sing N N 104 MA7 "C2'" "H2''" sing N N 105 MA7 "C5'" "C4'" sing N N 106 MA7 "C5'" "H5'" sing N N 107 MA7 "C5'" "H5''" sing N N 108 MA7 "C4'" "O4'" sing N N 109 MA7 "C4'" "C3'" sing N N 110 MA7 "C4'" "H4'" sing N N 111 MA7 "O4'" "C1'" sing N N 112 MA7 "C1'" "H1'" sing N N 113 MA7 "C3'" "O3'" sing N N 114 MA7 "C3'" "H3'" sing N N 115 MA7 "O3'" "HO3'" sing N N 116 MA7 OP3 HOP3 sing N N 117 # _ndb_struct_conf_na.entry_id 7E4E _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 A MA7 4 1_555 0.880 3.558 -0.897 -8.845 -4.320 80.438 1 A_DT1:MA74_A A 1 ? A 4 ? 23 3 1 A DA 8 1_555 A DT 5 1_555 -0.332 -0.176 -0.601 26.327 21.398 -19.420 2 A_DA8:DT5_A A 8 ? A 5 ? 20 1 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DT _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 MA7 _ndb_struct_na_base_pair_step.j_label_seq_id_1 4 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DA _ndb_struct_na_base_pair_step.i_label_seq_id_2 8 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DT _ndb_struct_na_base_pair_step.j_label_seq_id_2 5 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.411 _ndb_struct_na_base_pair_step.slide 2.008 _ndb_struct_na_base_pair_step.rise 3.078 _ndb_struct_na_base_pair_step.tilt -2.641 _ndb_struct_na_base_pair_step.roll 5.225 _ndb_struct_na_base_pair_step.twist 61.683 _ndb_struct_na_base_pair_step.x_displacement 1.718 _ndb_struct_na_base_pair_step.y_displacement 0.282 _ndb_struct_na_base_pair_step.helical_rise 3.236 _ndb_struct_na_base_pair_step.inclination 5.083 _ndb_struct_na_base_pair_step.tip 2.570 _ndb_struct_na_base_pair_step.helical_twist 61.933 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DT1DA8:DT5MA74_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 8 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 5 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id MA7 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id MA7 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 7E4E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_