HEADER DE NOVO PROTEIN 22-FEB-21 7E6G TITLE CRYSTAL STRUCTURE OF DIGUANYLATE CYCLASE SIAD IN COMPLEX WITH ITS TITLE 2 ACTIVATOR SIAC FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GGDEF DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RESPONSE REGULATOR PLED; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DUF1987 DOMAIN-CONTAINING PROTEIN; COMPND 8 CHAIN: C, D, E, F; COMPND 9 SYNONYM: SIAC; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PLED_3, PLED_1, PLED_4, NCTC12951_03415, NCTC13437_04900, SOURCE 5 NCTC13621_04785, PAMH19_0165, RW109_RW109_00771; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 10 ORGANISM_TAXID: 287; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIGUANYLATE CYCLASE, ACTIVATION, PSEUDOMONAS AERUGINOSA, BIOSYNTHETIC KEYWDS 2 PROTEIN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.S.ZHOU,L.ZHANG,L.ZHANG REVDAT 2 29-NOV-23 7E6G 1 REMARK REVDAT 1 22-SEP-21 7E6G 0 JRNL AUTH G.CHEN,J.ZHOU,Y.ZUO,W.HUO,J.PENG,M.LI,Y.ZHANG,T.WANG, JRNL AUTH 2 L.ZHANG,L.ZHANG,H.LIANG JRNL TITL STRUCTURAL BASIS FOR DIGUANYLATE CYCLASE ACTIVATION BY ITS JRNL TITL 2 BINDING PARTNER IN PSEUDOMONAS AERUGINOSA . JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 34498587 JRNL DOI 10.7554/ELIFE.67289 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 40897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2950 - 6.5288 0.99 2835 165 0.1817 0.2051 REMARK 3 2 6.5288 - 5.1844 0.98 2690 154 0.2222 0.2567 REMARK 3 3 5.1844 - 4.5297 1.00 2740 136 0.1774 0.2314 REMARK 3 4 4.5297 - 4.1158 1.00 2714 147 0.1812 0.2314 REMARK 3 5 4.1158 - 3.8209 1.00 2707 147 0.1942 0.2345 REMARK 3 6 3.8209 - 3.5958 0.99 2646 149 0.2093 0.2481 REMARK 3 7 3.5958 - 3.4157 1.00 2728 123 0.2317 0.2594 REMARK 3 8 3.4157 - 3.2671 1.00 2683 147 0.2234 0.3069 REMARK 3 9 3.2671 - 3.1413 1.00 2630 157 0.2452 0.2972 REMARK 3 10 3.1413 - 3.0330 0.99 2675 138 0.2590 0.3688 REMARK 3 11 3.0330 - 2.9381 0.99 2667 127 0.2741 0.3231 REMARK 3 12 2.9381 - 2.8542 0.99 2612 153 0.2840 0.3117 REMARK 3 13 2.8542 - 2.7790 0.91 2434 126 0.2859 0.3657 REMARK 3 14 2.7790 - 2.7113 0.87 2359 121 0.2857 0.3566 REMARK 3 15 2.7113 - 2.6500 0.64 1690 97 0.3125 0.3441 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M SPERMIDINE TRIHYDROCHLORIDE AND REMARK 280 15% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.31350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.31350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.26250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 118.36400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.26250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 118.36400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.31350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.26250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 118.36400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.31350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.26250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 118.36400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 265 REMARK 465 PRO A 266 REMARK 465 ALA A 267 REMARK 465 PRO A 268 REMARK 465 SER A 269 REMARK 465 ARG A 270 REMARK 465 PRO A 271 REMARK 465 ALA A 272 REMARK 465 PRO A 273 REMARK 465 ALA A 274 REMARK 465 ARG A 275 REMARK 465 SER B 0 REMARK 465 ALA B 261 REMARK 465 LEU B 262 REMARK 465 PRO B 263 REMARK 465 PRO B 264 REMARK 465 LEU B 265 REMARK 465 PRO B 266 REMARK 465 ALA B 267 REMARK 465 PRO B 268 REMARK 465 SER B 269 REMARK 465 ARG B 270 REMARK 465 PRO B 271 REMARK 465 ALA B 272 REMARK 465 PRO B 273 REMARK 465 ALA B 274 REMARK 465 ARG B 275 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 GLU C 126 REMARK 465 SER D 0 REMARK 465 GLU D 126 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 ASP E 3 REMARK 465 LEU E 4 REMARK 465 GLU E 126 REMARK 465 SER F 0 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 ASP F 125 REMARK 465 GLU F 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 25 C LEU A 25 O -0.124 REMARK 500 HIS A 26 C HIS A 26 O -0.120 REMARK 500 GLN A 27 C GLN A 27 O -0.158 REMARK 500 ALA A 28 C ALA A 28 O -0.142 REMARK 500 LEU A 29 C LEU A 29 O -0.118 REMARK 500 ARG A 45 C ARG A 45 O -0.118 REMARK 500 ALA A 47 C ALA A 47 O -0.144 REMARK 500 ARG A 48 C ARG A 48 O -0.116 REMARK 500 SER A 50 C SER A 50 O -0.116 REMARK 500 GLU A 59 C GLU A 59 O -0.130 REMARK 500 ARG A 67 C ARG A 67 O -0.167 REMARK 500 TYR A 68 CB TYR A 68 CG -0.093 REMARK 500 HIS A 69 C HIS A 69 O -0.120 REMARK 500 LYS A 70 C LYS A 70 O -0.129 REMARK 500 GLN A 71 C GLN A 71 O -0.114 REMARK 500 LEU A 72 C LEU A 72 O -0.145 REMARK 500 ARG A 73 C ARG A 73 O -0.147 REMARK 500 ARG A 74 C ARG A 74 O -0.147 REMARK 500 LEU A 75 C LEU A 75 O -0.125 REMARK 500 ARG A 80 C ARG A 80 O -0.148 REMARK 500 ARG A 84 C ARG A 84 O -0.169 REMARK 500 PRO A 109 C PRO A 109 O -0.126 REMARK 500 ASN A 110 CG ASN A 110 OD1 -0.155 REMARK 500 ASN A 110 CG ASN A 110 ND2 -0.173 REMARK 500 ASN A 110 C ASN A 110 O -0.171 REMARK 500 ARG A 111 CZ ARG A 111 NH1 -0.134 REMARK 500 ARG A 111 CZ ARG A 111 NH2 -0.140 REMARK 500 ARG A 111 C ARG A 111 O -0.137 REMARK 500 ARG A 112 CZ ARG A 112 NH2 -0.088 REMARK 500 ARG A 112 C ARG A 112 O -0.163 REMARK 500 LEU A 114 C LEU A 114 O -0.153 REMARK 500 GLU A 116 C GLU A 116 O -0.140 REMARK 500 ASN A 122 CG ASN A 122 OD1 -0.185 REMARK 500 ASN B 110 CG ASN B 110 OD1 -0.135 REMARK 500 ARG B 112 C ARG B 112 O -0.146 REMARK 500 TRP B 149 CB TRP B 149 CG -0.124 REMARK 500 TRP B 149 CE3 TRP B 149 CZ3 -0.108 REMARK 500 GLY B 150 C GLY B 150 O -0.134 REMARK 500 HIS B 151 C HIS B 151 O -0.129 REMARK 500 ASP B 152 C ASP B 152 O -0.124 REMARK 500 SER B 153 CB SER B 153 OG -0.094 REMARK 500 GLY B 154 C GLY B 154 O -0.125 REMARK 500 ASP B 155 C ASP B 155 O -0.168 REMARK 500 ARG B 156 C ARG B 156 O -0.146 REMARK 500 VAL B 157 C VAL B 157 O -0.167 REMARK 500 LEU B 158 C LEU B 158 O -0.130 REMARK 500 ARG B 203 CZ ARG B 203 NH1 -0.091 REMARK 500 TYR B 235 CG TYR B 235 CD1 -0.079 REMARK 500 TYR B 235 CE1 TYR B 235 CZ -0.087 REMARK 500 THR B 238 CB THR B 238 CG2 -0.219 REMARK 500 REMARK 500 THIS ENTRY HAS 62 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 48 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 LEU A 72 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 LEU A 114 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP B 152 CB - CG - OD2 ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG B 156 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 62 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 181 36.81 -140.33 REMARK 500 ARG A 254 163.90 71.52 REMARK 500 ALA A 261 -169.14 -120.74 REMARK 500 ILE B 101 53.06 -100.97 REMARK 500 SER B 252 41.91 -90.36 REMARK 500 GLN C 54 19.18 -144.82 REMARK 500 LEU C 64 -115.36 -109.46 REMARK 500 THR D 9 -159.02 -129.50 REMARK 500 TYR D 31 52.78 -119.47 REMARK 500 LEU D 64 -118.66 -99.76 REMARK 500 THR E 9 -168.79 -119.27 REMARK 500 GLN E 54 1.92 56.69 REMARK 500 LEU E 64 -87.24 -96.39 REMARK 500 TYR F 31 55.67 -119.51 REMARK 500 GLN F 54 0.18 48.79 REMARK 500 ARG F 62 55.59 -110.15 REMARK 500 LEU F 64 -102.67 -110.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 99 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU E 102 -10.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD1 REMARK 620 2 VAL A 139 O 74.2 REMARK 620 3 GLU A 181 OE2 101.6 92.7 REMARK 620 4 G2P A 302 O1G 80.4 85.1 176.6 REMARK 620 5 G2P A 302 O3B 127.1 99.9 131.4 46.8 REMARK 620 6 G2P A 302 O1B 162.8 90.4 86.7 90.7 46.9 REMARK 620 7 G2P A 302 O2A 131.1 154.6 84.5 96.3 64.7 64.2 REMARK 620 N 1 2 3 4 5 6 DBREF1 7E6G A 1 275 UNP A0A069QEY1_PSEAI DBREF2 7E6G A A0A069QEY1 1 275 DBREF1 7E6G B 1 275 UNP A0A069QEY1_PSEAI DBREF2 7E6G B A0A069QEY1 1 275 DBREF1 7E6G C 1 126 UNP A0A072ZHB4_PSEAI DBREF2 7E6G C A0A072ZHB4 1 126 DBREF1 7E6G D 1 126 UNP A0A072ZHB4_PSEAI DBREF2 7E6G D A0A072ZHB4 1 126 DBREF1 7E6G E 1 126 UNP A0A072ZHB4_PSEAI DBREF2 7E6G E A0A072ZHB4 1 126 DBREF1 7E6G F 1 126 UNP A0A072ZHB4_PSEAI DBREF2 7E6G F A0A072ZHB4 1 126 SEQADV 7E6G SER A 0 UNP A0A069QEY EXPRESSION TAG SEQADV 7E6G SER B 0 UNP A0A069QEY EXPRESSION TAG SEQADV 7E6G SER C 0 UNP A0A072ZHB EXPRESSION TAG SEQADV 7E6G SER D 0 UNP A0A072ZHB EXPRESSION TAG SEQADV 7E6G SER E 0 UNP A0A072ZHB EXPRESSION TAG SEQADV 7E6G SER F 0 UNP A0A072ZHB EXPRESSION TAG SEQRES 1 A 276 SER MET SER ARG GLU ARG GLU LEU ASP ALA TRP ILE ASP SEQRES 2 A 276 GLY LEU LEU ALA ASP PRO GLN PHE HIS GLY HIS PRO LEU SEQRES 3 A 276 HIS GLN ALA LEU ALA ARG LEU ARG GLN GLN SER LEU GLU SEQRES 4 A 276 GLN LEU VAL ARG LEU GLU ARG ILE ALA ARG ILE SER ASP SEQRES 5 A 276 GLY PHE GLN SER MET ALA ARG GLU GLN ASN LEU SER LEU SEQRES 6 A 276 SER GLU ARG TYR HIS LYS GLN LEU ARG ARG LEU GLU LYS SEQRES 7 A 276 VAL ALA ARG ILE SER ASP ARG TYR GLN GLN MET MET ARG SEQRES 8 A 276 ASP LEU ASN LEU ALA LEU LYS GLU ALA SER ILE ARG ASP SEQRES 9 A 276 PRO LEU THR GLY LEU PRO ASN ARG ARG MET LEU LEU GLU SEQRES 10 A 276 ARG LEU ARG GLU GLU ASN GLU ARG SER GLN ARG HIS GLY SEQRES 11 A 276 GLN SER TYR VAL LEU ALA MET LEU ASP VAL ASP PHE PHE SEQRES 12 A 276 LYS GLN VAL ASN ASP THR TRP GLY HIS ASP SER GLY ASP SEQRES 13 A 276 ARG VAL LEU VAL GLU ILE ALA ARG ALA MET GLU SER GLU SEQRES 14 A 276 LEU ARG GLU TYR ASP LEU CYS GLY ARG TRP GLY GLY GLU SEQRES 15 A 276 GLU PHE LEU LEU LEU LEU PRO GLN THR ARG LEU GLN ASP SEQRES 16 A 276 ALA GLY PRO VAL LEU GLU ARG VAL ARG ASP SER VAL ARG SEQRES 17 A 276 THR LEU ALA VAL ARG VAL GLY THR GLU ALA LEU SER VAL SEQRES 18 A 276 THR ALA SER VAL GLY VAL THR GLU HIS ARG ILE GLY GLU SEQRES 19 A 276 THR TYR SER GLN THR VAL ASN ARG ALA ASP ALA ALA LEU SEQRES 20 A 276 LEU ASP ALA LYS ARG SER GLY ARG ASP LYS CYS VAL PHE SEQRES 21 A 276 ALA ALA LEU PRO PRO LEU PRO ALA PRO SER ARG PRO ALA SEQRES 22 A 276 PRO ALA ARG SEQRES 1 B 276 SER MET SER ARG GLU ARG GLU LEU ASP ALA TRP ILE ASP SEQRES 2 B 276 GLY LEU LEU ALA ASP PRO GLN PHE HIS GLY HIS PRO LEU SEQRES 3 B 276 HIS GLN ALA LEU ALA ARG LEU ARG GLN GLN SER LEU GLU SEQRES 4 B 276 GLN LEU VAL ARG LEU GLU ARG ILE ALA ARG ILE SER ASP SEQRES 5 B 276 GLY PHE GLN SER MET ALA ARG GLU GLN ASN LEU SER LEU SEQRES 6 B 276 SER GLU ARG TYR HIS LYS GLN LEU ARG ARG LEU GLU LYS SEQRES 7 B 276 VAL ALA ARG ILE SER ASP ARG TYR GLN GLN MET MET ARG SEQRES 8 B 276 ASP LEU ASN LEU ALA LEU LYS GLU ALA SER ILE ARG ASP SEQRES 9 B 276 PRO LEU THR GLY LEU PRO ASN ARG ARG MET LEU LEU GLU SEQRES 10 B 276 ARG LEU ARG GLU GLU ASN GLU ARG SER GLN ARG HIS GLY SEQRES 11 B 276 GLN SER TYR VAL LEU ALA MET LEU ASP VAL ASP PHE PHE SEQRES 12 B 276 LYS GLN VAL ASN ASP THR TRP GLY HIS ASP SER GLY ASP SEQRES 13 B 276 ARG VAL LEU VAL GLU ILE ALA ARG ALA MET GLU SER GLU SEQRES 14 B 276 LEU ARG GLU TYR ASP LEU CYS GLY ARG TRP GLY GLY GLU SEQRES 15 B 276 GLU PHE LEU LEU LEU LEU PRO GLN THR ARG LEU GLN ASP SEQRES 16 B 276 ALA GLY PRO VAL LEU GLU ARG VAL ARG ASP SER VAL ARG SEQRES 17 B 276 THR LEU ALA VAL ARG VAL GLY THR GLU ALA LEU SER VAL SEQRES 18 B 276 THR ALA SER VAL GLY VAL THR GLU HIS ARG ILE GLY GLU SEQRES 19 B 276 THR TYR SER GLN THR VAL ASN ARG ALA ASP ALA ALA LEU SEQRES 20 B 276 LEU ASP ALA LYS ARG SER GLY ARG ASP LYS CYS VAL PHE SEQRES 21 B 276 ALA ALA LEU PRO PRO LEU PRO ALA PRO SER ARG PRO ALA SEQRES 22 B 276 PRO ALA ARG SEQRES 1 C 127 SER MET SER ASP LEU HIS ILE PRO GLY THR GLN SER THR SEQRES 2 C 127 PRO ALA ILE GLN GLY ASP TRP GLN ALA GLY ARG LEU SER SEQRES 3 C 127 MET GLN GLY ASP SER TYR PRO GLU ASN SER TYR GLU LEU SEQRES 4 C 127 PHE GLY GLN VAL ILE ASP TRP VAL GLU ARG PHE LEU ALA SEQRES 5 C 127 ASP GLY GLN ARG PRO LEU GLU LEU ASP LEU ARG LEU LEU SEQRES 6 C 127 TYR LEU ASN THR SER SER ILE LYS ALA MET MET ASP ILE SEQRES 7 C 127 LEU ASP LEU LEU GLU GLU ALA HIS GLN GLY GLY ARG PRO SEQRES 8 C 127 VAL SER LEU ARG TRP HIS TYR ASP ARG ARG ASN GLU ARG SEQRES 9 C 127 VAL ALA GLU LEU ALA GLU GLU PHE ARG GLU ASP CYS SER SEQRES 10 C 127 PHE PRO PHE ALA ILE GLN ALA HIS ASP GLU SEQRES 1 D 127 SER MET SER ASP LEU HIS ILE PRO GLY THR GLN SER THR SEQRES 2 D 127 PRO ALA ILE GLN GLY ASP TRP GLN ALA GLY ARG LEU SER SEQRES 3 D 127 MET GLN GLY ASP SER TYR PRO GLU ASN SER TYR GLU LEU SEQRES 4 D 127 PHE GLY GLN VAL ILE ASP TRP VAL GLU ARG PHE LEU ALA SEQRES 5 D 127 ASP GLY GLN ARG PRO LEU GLU LEU ASP LEU ARG LEU LEU SEQRES 6 D 127 TYR LEU ASN THR SER SER ILE LYS ALA MET MET ASP ILE SEQRES 7 D 127 LEU ASP LEU LEU GLU GLU ALA HIS GLN GLY GLY ARG PRO SEQRES 8 D 127 VAL SER LEU ARG TRP HIS TYR ASP ARG ARG ASN GLU ARG SEQRES 9 D 127 VAL ALA GLU LEU ALA GLU GLU PHE ARG GLU ASP CYS SER SEQRES 10 D 127 PHE PRO PHE ALA ILE GLN ALA HIS ASP GLU SEQRES 1 E 127 SER MET SER ASP LEU HIS ILE PRO GLY THR GLN SER THR SEQRES 2 E 127 PRO ALA ILE GLN GLY ASP TRP GLN ALA GLY ARG LEU SER SEQRES 3 E 127 MET GLN GLY ASP SER TYR PRO GLU ASN SER TYR GLU LEU SEQRES 4 E 127 PHE GLY GLN VAL ILE ASP TRP VAL GLU ARG PHE LEU ALA SEQRES 5 E 127 ASP GLY GLN ARG PRO LEU GLU LEU ASP LEU ARG LEU LEU SEQRES 6 E 127 TYR LEU ASN THR SER SER ILE LYS ALA MET MET ASP ILE SEQRES 7 E 127 LEU ASP LEU LEU GLU GLU ALA HIS GLN GLY GLY ARG PRO SEQRES 8 E 127 VAL SER LEU ARG TRP HIS TYR ASP ARG ARG ASN GLU ARG SEQRES 9 E 127 VAL ALA GLU LEU ALA GLU GLU PHE ARG GLU ASP CYS SER SEQRES 10 E 127 PHE PRO PHE ALA ILE GLN ALA HIS ASP GLU SEQRES 1 F 127 SER MET SER ASP LEU HIS ILE PRO GLY THR GLN SER THR SEQRES 2 F 127 PRO ALA ILE GLN GLY ASP TRP GLN ALA GLY ARG LEU SER SEQRES 3 F 127 MET GLN GLY ASP SER TYR PRO GLU ASN SER TYR GLU LEU SEQRES 4 F 127 PHE GLY GLN VAL ILE ASP TRP VAL GLU ARG PHE LEU ALA SEQRES 5 F 127 ASP GLY GLN ARG PRO LEU GLU LEU ASP LEU ARG LEU LEU SEQRES 6 F 127 TYR LEU ASN THR SER SER ILE LYS ALA MET MET ASP ILE SEQRES 7 F 127 LEU ASP LEU LEU GLU GLU ALA HIS GLN GLY GLY ARG PRO SEQRES 8 F 127 VAL SER LEU ARG TRP HIS TYR ASP ARG ARG ASN GLU ARG SEQRES 9 F 127 VAL ALA GLU LEU ALA GLU GLU PHE ARG GLU ASP CYS SER SEQRES 10 F 127 PHE PRO PHE ALA ILE GLN ALA HIS ASP GLU HET MG A 301 1 HET G2P A 302 32 HETNAM MG MAGNESIUM ION HETNAM G2P PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER FORMUL 7 MG MG 2+ FORMUL 8 G2P C11 H18 N5 O13 P3 FORMUL 9 HOH *197(H2 O) HELIX 1 AA1 MET A 1 ASP A 17 1 17 HELIX 2 AA2 LEU A 25 ARG A 102 1 78 HELIX 3 AA3 ASN A 110 HIS A 128 1 19 HELIX 4 AA4 PHE A 141 GLY A 150 1 10 HELIX 5 AA5 GLY A 150 GLU A 168 1 19 HELIX 6 AA6 ARG A 191 THR A 208 1 18 HELIX 7 AA7 THR A 234 SER A 252 1 19 HELIX 8 AA8 SER B 2 ALA B 16 1 15 HELIX 9 AA9 ASP B 17 HIS B 21 5 5 HELIX 10 AB1 HIS B 23 ALA B 99 1 77 HELIX 11 AB2 ASN B 110 HIS B 128 1 19 HELIX 12 AB3 PHE B 141 GLY B 150 1 10 HELIX 13 AB4 GLY B 150 GLU B 168 1 19 HELIX 14 AB5 ARG B 191 THR B 208 1 18 HELIX 15 AB6 THR B 234 SER B 252 1 19 HELIX 16 AB7 ASN C 34 GLY C 53 1 20 HELIX 17 AB8 ASN C 67 GLY C 87 1 21 HELIX 18 AB9 ARG C 103 GLU C 113 1 11 HELIX 19 AC1 ASN D 34 ASP D 52 1 19 HELIX 20 AC2 ASN D 67 GLY D 87 1 21 HELIX 21 AC3 GLU D 102 GLU D 113 1 12 HELIX 22 AC4 ASN E 34 GLY E 53 1 20 HELIX 23 AC5 ASN E 67 GLY E 87 1 21 HELIX 24 AC6 ASN E 101 GLU E 113 1 13 HELIX 25 AC7 ASN F 34 GLY F 53 1 20 HELIX 26 AC8 ASN F 67 GLY F 87 1 21 HELIX 27 AC9 ASN F 101 GLU F 113 1 13 SHEET 1 AA1 5 LEU A 174 ARG A 177 0 SHEET 2 AA1 5 GLU A 182 LEU A 187 -1 O LEU A 184 N GLY A 176 SHEET 3 AA1 5 VAL A 133 VAL A 139 -1 N ALA A 135 O LEU A 185 SHEET 4 AA1 5 ALA A 222 GLU A 228 -1 O GLY A 225 N MET A 136 SHEET 5 AA1 5 CYS A 257 PHE A 259 1 O VAL A 258 N VAL A 226 SHEET 1 AA2 2 VAL A 211 VAL A 213 0 SHEET 2 AA2 2 GLU A 216 LEU A 218 -1 O GLU A 216 N VAL A 213 SHEET 1 AA3 5 LEU B 174 GLY B 179 0 SHEET 2 AA3 5 GLU B 182 LEU B 187 -1 O LEU B 184 N GLY B 176 SHEET 3 AA3 5 VAL B 133 VAL B 139 -1 N ALA B 135 O LEU B 185 SHEET 4 AA3 5 ALA B 222 GLU B 228 -1 O THR B 227 N LEU B 134 SHEET 5 AA3 5 CYS B 257 PHE B 259 1 O VAL B 258 N VAL B 226 SHEET 1 AA4 2 VAL B 211 VAL B 213 0 SHEET 2 AA4 2 GLU B 216 LEU B 218 -1 O LEU B 218 N VAL B 211 SHEET 1 AA5 6 LEU C 4 ILE C 6 0 SHEET 2 AA5 6 ALA C 14 ASP C 18 -1 O GLY C 17 N LEU C 4 SHEET 3 AA5 6 ARG C 23 SER C 30 -1 O ARG C 23 N ASP C 18 SHEET 4 AA5 6 LEU C 57 LEU C 66 1 O ARG C 62 N MET C 26 SHEET 5 AA5 6 VAL C 91 TYR C 97 1 O SER C 92 N LEU C 59 SHEET 6 AA5 6 PHE C 119 ALA C 123 1 O GLN C 122 N TRP C 95 SHEET 1 AA6 6 LEU D 4 ILE D 6 0 SHEET 2 AA6 6 ALA D 14 ASP D 18 -1 O GLY D 17 N LEU D 4 SHEET 3 AA6 6 ARG D 23 SER D 30 -1 O ARG D 23 N ASP D 18 SHEET 4 AA6 6 LEU D 57 LEU D 66 1 O ARG D 62 N MET D 26 SHEET 5 AA6 6 VAL D 91 TYR D 97 1 O HIS D 96 N LEU D 61 SHEET 6 AA6 6 PHE D 119 ALA D 123 1 O ALA D 120 N LEU D 93 SHEET 1 AA7 5 ALA E 14 ASP E 18 0 SHEET 2 AA7 5 ARG E 23 SER E 30 -1 O SER E 25 N GLN E 16 SHEET 3 AA7 5 LEU E 57 LEU E 66 1 O ASP E 60 N LEU E 24 SHEET 4 AA7 5 VAL E 91 ASP E 98 1 O ARG E 94 N LEU E 59 SHEET 5 AA7 5 PHE E 119 HIS E 124 1 O ALA E 120 N TRP E 95 SHEET 1 AA8 6 LEU F 4 ILE F 6 0 SHEET 2 AA8 6 ALA F 14 ASP F 18 -1 O GLY F 17 N LEU F 4 SHEET 3 AA8 6 ARG F 23 SER F 30 -1 O ARG F 23 N ASP F 18 SHEET 4 AA8 6 LEU F 57 LEU F 66 1 O ARG F 62 N MET F 26 SHEET 5 AA8 6 VAL F 91 ASP F 98 1 O HIS F 96 N LEU F 61 SHEET 6 AA8 6 PHE F 119 HIS F 124 1 O GLN F 122 N TRP F 95 LINK OD1 ASP A 138 MG MG A 301 1555 1555 2.36 LINK O VAL A 139 MG MG A 301 1555 1555 2.29 LINK OE2 GLU A 181 MG MG A 301 1555 1555 1.97 LINK MG MG A 301 O1G G2P A 302 1555 1555 2.84 LINK MG MG A 301 O3B G2P A 302 1555 1555 2.55 LINK MG MG A 301 O1B G2P A 302 1555 1555 2.95 LINK MG MG A 301 O2A G2P A 302 1555 1555 2.35 CRYST1 82.525 236.728 148.627 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006728 0.00000