HEADER OXIDOREDUCTASE 22-FEB-21 7E6J TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) H725A IN COMPLEX WITH TITLE 2 FACTOR X PEPTIDE FRAGMENT (39MER-4SER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PEPTIDE FROM FACTOR X LIGHT CHAIN; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: COAGULATION FACTOR X; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,A.BRASNETT,L.BREWITZ,C.J.SCHOFIELD REVDAT 2 29-NOV-23 7E6J 1 REMARK REVDAT 1 30-JUN-21 7E6J 0 JRNL AUTH A.BRASNETT,I.PFEFFER,L.BREWITZ,R.CHOWDHURY,Y.NAKASHIMA, JRNL AUTH 2 A.TUMBER,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL HUMAN OXYGENASE VARIANTS EMPLOYING A SINGLE PROTEIN FE II JRNL TITL 2 LIGAND ARE CATALYTICALLY ACTIVE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 14657 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33887099 JRNL DOI 10.1002/ANIE.202103711 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 82246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5400 - 5.7000 1.00 2916 144 0.1770 0.2383 REMARK 3 2 5.6900 - 4.5200 1.00 2888 145 0.1308 0.1605 REMARK 3 3 4.5200 - 3.9500 1.00 2925 139 0.1154 0.1792 REMARK 3 4 3.9500 - 3.5900 1.00 2871 137 0.1308 0.1606 REMARK 3 5 3.5900 - 3.3300 1.00 2913 142 0.1433 0.1726 REMARK 3 6 3.3300 - 3.1400 1.00 2917 142 0.1622 0.2443 REMARK 3 7 3.1400 - 2.9800 1.00 2937 148 0.1676 0.1836 REMARK 3 8 2.9800 - 2.8500 1.00 2900 139 0.1655 0.2030 REMARK 3 9 2.8500 - 2.7400 1.00 2890 143 0.1694 0.2226 REMARK 3 10 2.7400 - 2.6500 1.00 2895 143 0.1652 0.2332 REMARK 3 11 2.6500 - 2.5600 1.00 2915 138 0.1727 0.2137 REMARK 3 12 2.5600 - 2.4900 1.00 2922 139 0.1715 0.2228 REMARK 3 13 2.4900 - 2.4200 1.00 2910 139 0.1693 0.2176 REMARK 3 14 2.4200 - 2.3600 1.00 2941 140 0.1775 0.2345 REMARK 3 15 2.3600 - 2.3100 1.00 2885 137 0.1802 0.2368 REMARK 3 16 2.3100 - 2.2600 1.00 2900 142 0.1899 0.2247 REMARK 3 17 2.2600 - 2.2200 1.00 2914 139 0.1967 0.2463 REMARK 3 18 2.2200 - 2.1700 1.00 2874 135 0.2082 0.2409 REMARK 3 19 2.1700 - 2.1400 1.00 2947 143 0.1963 0.2311 REMARK 3 20 2.1400 - 2.1000 1.00 2887 142 0.2235 0.2444 REMARK 3 21 2.1000 - 2.0700 1.00 2903 140 0.2331 0.2596 REMARK 3 22 2.0700 - 2.0300 1.00 2928 140 0.2573 0.2702 REMARK 3 23 2.0300 - 2.0000 1.00 2907 145 0.2574 0.2619 REMARK 3 24 2.0000 - 1.9800 1.00 2904 140 0.2735 0.2989 REMARK 3 25 1.9800 - 1.9500 1.00 2877 140 0.2966 0.3020 REMARK 3 26 1.9500 - 1.9200 1.00 2893 141 0.3243 0.3081 REMARK 3 27 1.9200 - 1.9000 0.99 2887 138 0.3515 0.4309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.493 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3710 REMARK 3 ANGLE : 0.571 5012 REMARK 3 CHIRALITY : 0.039 526 REMARK 3 PLANARITY : 0.003 655 REMARK 3 DIHEDRAL : 22.071 1396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7717 -5.2441 -6.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.3753 REMARK 3 T33: 0.3862 T12: 0.1024 REMARK 3 T13: 0.1227 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 5.6304 L22: 4.0943 REMARK 3 L33: 4.2756 L12: -1.4978 REMARK 3 L13: 0.6102 L23: -0.5966 REMARK 3 S TENSOR REMARK 3 S11: 0.3108 S12: 0.5734 S13: 0.4407 REMARK 3 S21: -0.5301 S22: -0.3187 S23: -0.6037 REMARK 3 S31: -0.0092 S32: 0.2812 S33: -0.0129 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8600 -16.4054 17.1037 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.3673 REMARK 3 T33: 0.2847 T12: -0.1070 REMARK 3 T13: -0.0658 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.6908 L22: 2.1595 REMARK 3 L33: 3.5641 L12: 0.2941 REMARK 3 L13: -1.4675 L23: -2.6504 REMARK 3 S TENSOR REMARK 3 S11: 0.1966 S12: -0.0352 S13: 0.0273 REMARK 3 S21: 0.0036 S22: 0.0193 S23: 0.0725 REMARK 3 S31: 0.0449 S32: -0.1965 S33: -0.1987 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 539 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9020 -25.7086 45.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.2779 REMARK 3 T33: 0.2678 T12: 0.0042 REMARK 3 T13: 0.0063 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.7413 L22: 0.8701 REMARK 3 L33: 1.8982 L12: 0.1655 REMARK 3 L13: 0.8898 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: 0.2826 S13: -0.0759 REMARK 3 S21: -0.1506 S22: 0.0642 S23: -0.0052 REMARK 3 S31: 0.1181 S32: 0.1661 S33: -0.0320 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3152 -18.8029 32.6673 REMARK 3 T TENSOR REMARK 3 T11: 0.3590 T22: 0.4693 REMARK 3 T33: 0.3402 T12: -0.0374 REMARK 3 T13: -0.0523 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 6.3294 L22: 3.0667 REMARK 3 L33: 8.1976 L12: -0.5226 REMARK 3 L13: 3.9952 L23: 0.6724 REMARK 3 S TENSOR REMARK 3 S11: -0.3577 S12: 0.3576 S13: 0.5968 REMARK 3 S21: -0.4107 S22: -0.0851 S23: 0.1108 REMARK 3 S31: -0.7447 S32: 0.1163 S33: 0.3794 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9667 -9.3672 21.4713 REMARK 3 T TENSOR REMARK 3 T11: 0.5367 T22: 0.8261 REMARK 3 T33: 0.4881 T12: -0.0855 REMARK 3 T13: -0.1310 T23: 0.1240 REMARK 3 L TENSOR REMARK 3 L11: 4.3136 L22: 8.7133 REMARK 3 L33: 2.0002 L12: 0.4911 REMARK 3 L13: 5.1369 L23: -1.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.1715 S12: 1.1278 S13: 0.3819 REMARK 3 S21: -0.0534 S22: 0.0435 S23: 0.0352 REMARK 3 S31: -0.0005 S32: -1.0462 S33: 0.1097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1300020769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97629 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM PCTP, 25% W/V PEG 1500, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.11850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.77100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.42050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.77100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.11850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.42050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 353 CE NZ REMARK 470 ARG A 437 CD NE CZ NH1 NH2 REMARK 470 GLN A 448 OE1 NE2 REMARK 470 LYS A 475 NZ REMARK 470 LYS A 541 CD CE NZ REMARK 470 LYS A 545 CE NZ REMARK 470 GLU A 548 CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 571 NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 607 NZ REMARK 470 LYS A 609 NZ REMARK 470 ARG A 635 CZ NH1 NH2 REMARK 470 LYS A 697 CD CE NZ REMARK 470 GLN A 750 OE1 NE2 REMARK 470 ARG A 753 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 735 O2 PPI A 1102 1.59 REMARK 500 O HOH A 1286 O HOH A 1474 1.93 REMARK 500 O HOH A 1378 O HOH A 1412 1.95 REMARK 500 O HOH A 1478 O HOH A 1542 1.96 REMARK 500 O HOH A 1482 O HOH A 1516 2.06 REMARK 500 O HOH A 1448 O HOH A 1523 2.06 REMARK 500 O HOH A 1501 O HOH B 314 2.07 REMARK 500 O HOH A 1414 O HOH A 1502 2.08 REMARK 500 O HOH A 1429 O HOH B 316 2.15 REMARK 500 O HOH A 1287 O HOH B 315 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 47.04 -90.71 REMARK 500 ALA A 608 50.32 -148.82 REMARK 500 ALA A 705 -126.26 59.05 REMARK 500 LYS B 102 -66.59 -101.35 REMARK 500 LEU B 105 52.30 -141.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 7E6J A 330 758 UNP Q12797 ASPH_HUMAN 330 758 DBREF 7E6J B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 7E6J ALA A 725 UNP Q12797 HIS 725 ENGINEERED MUTATION SEQADV 7E6J SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 7E6J SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 7E6J SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 7E6J SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE SEQRES 31 A 429 ASP ASP SER PHE GLU ALA GLU VAL TRP GLN ASP ALA SER SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET GOL A1101 13 HET PPI A1102 20 HET GOL A1103 12 HET GOL B 201 12 HETNAM GOL GLYCEROL HETNAM PPI PROPANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 PPI C3 H6 O2 FORMUL 7 HOH *362(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 GLY A 539 1 16 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 GLY A 643 1 7 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 ALA A 725 GLN A 729 -1 O ALA A 725 N HIS A 679 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.03 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.03 CRYST1 50.237 86.841 123.542 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008094 0.00000