HEADER HYDROLASE 23-FEB-21 7E6Q TITLE CRYSTAL STRUCTURE OF INFLUENZA A VIRUS NEURAMINIDASE N5 COMPLEXED WITH TITLE 2 4'-PHENYL-1,2,3-TRIAZOLYLATED OSELTAMIVIR CARBOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 3 A/DUCK/ALBERTA/60/1976 H12N5); SOURCE 4 ORGANISM_TAXID: 385582; SOURCE 5 STRAIN: A/DUCK/ALBERTA/60/1976 H12N5; SOURCE 6 GENE: NA; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 266783 KEYWDS INFLUENZA VIRUS, NEURAMINIDASE INHIBITORS, OSELTAMIVIR DERIVATIVES, KEYWDS 2 150-CAVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.WANG,O.O.BABAYEMI,C.N.LI,L.F.FU,S.S.ZHANG,J.X.QI,X.LV,X.B.LI REVDAT 3 29-NOV-23 7E6Q 1 REMARK REVDAT 2 15-JUN-22 7E6Q 1 JRNL REVDAT 1 17-MAR-21 7E6Q 0 JRNL AUTH P.WANG,B.O.OLADEJO,C.LI,L.FU,S.ZHANG,J.QI,X.LV,X.LI JRNL TITL STRUCTURE-BASED DESIGN OF 5'-SUBSTITUTED 1,2,3-TRIAZOLYLATED JRNL TITL 2 OSELTAMIVIR DERIVATIVES AS POTENT INFLUENZA NEURAMINIDASE JRNL TITL 3 INHIBITORS. JRNL REF RSC ADV V. 11 9528 2021 JRNL REFN ESSN 2046-2069 JRNL PMID 35423449 JRNL DOI 10.1039/D1RA00472G REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 40713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3700 - 5.4200 1.00 2787 135 0.1805 0.1817 REMARK 3 2 5.4100 - 4.3000 1.00 2712 166 0.1432 0.1579 REMARK 3 3 4.3000 - 3.7600 1.00 2697 143 0.1611 0.1795 REMARK 3 4 3.7600 - 3.4100 1.00 2723 126 0.1951 0.2242 REMARK 3 5 3.4100 - 3.1700 1.00 2716 128 0.2146 0.2619 REMARK 3 6 3.1700 - 2.9800 1.00 2705 138 0.2325 0.2025 REMARK 3 7 2.9800 - 2.8300 1.00 2663 150 0.2327 0.3073 REMARK 3 8 2.8300 - 2.7100 1.00 2686 149 0.2441 0.2797 REMARK 3 9 2.7100 - 2.6100 0.99 2676 138 0.2517 0.2983 REMARK 3 10 2.6100 - 2.5200 0.99 2638 150 0.2645 0.2852 REMARK 3 11 2.5200 - 2.4400 0.95 2530 143 0.2693 0.3634 REMARK 3 12 2.4400 - 2.3700 0.91 2417 126 0.2607 0.3475 REMARK 3 13 2.3700 - 2.3100 0.86 2293 149 0.2687 0.2922 REMARK 3 14 2.3100 - 2.2500 0.83 2249 107 0.2730 0.3324 REMARK 3 15 2.2500 - 2.2000 0.81 2157 116 0.2915 0.3253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.009 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6342 REMARK 3 ANGLE : 1.215 8607 REMARK 3 CHIRALITY : 0.069 929 REMARK 3 PLANARITY : 0.006 1109 REMARK 3 DIHEDRAL : 17.925 2254 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 137.0255 106.0632 -22.3873 REMARK 3 T TENSOR REMARK 3 T11: 0.2190 T22: 0.2356 REMARK 3 T33: 0.2883 T12: -0.0027 REMARK 3 T13: -0.0121 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.8946 L22: 0.6708 REMARK 3 L33: 0.2303 L12: -0.0245 REMARK 3 L13: -0.0610 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0297 S13: -0.0389 REMARK 3 S21: -0.0111 S22: 0.0004 S23: -0.1722 REMARK 3 S31: 0.0104 S32: 0.0215 S33: 0.0094 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 162.3479 82.7903 7.7603 REMARK 3 T TENSOR REMARK 3 T11: 0.3621 T22: 0.3515 REMARK 3 T33: 0.3169 T12: 0.0126 REMARK 3 T13: -0.0634 T23: -0.1112 REMARK 3 L TENSOR REMARK 3 L11: 0.8163 L22: 0.5314 REMARK 3 L33: 0.3596 L12: -0.1113 REMARK 3 L13: -0.1279 L23: -0.2740 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: -0.1329 S13: 0.2820 REMARK 3 S21: 0.1772 S22: -0.0324 S23: -0.0869 REMARK 3 S31: -0.0644 S32: -0.0454 S33: 0.0931 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.5), 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350 , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 476 REMARK 465 MET B 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 119 OE1 GLU B 228 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 119 C PRO A 120 N 0.132 REMARK 500 GLU B 119 C PRO B 120 N 0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 120 C - N - CA ANGL. DEV. = 14.0 DEGREES REMARK 500 MET A 211 CA - CB - CG ANGL. DEV. = -12.1 DEGREES REMARK 500 MET A 211 CB - CG - SD ANGL. DEV. = 19.9 DEGREES REMARK 500 MET A 211 CG - SD - CE ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 220 CG - CD - NE ANGL. DEV. = -13.7 DEGREES REMARK 500 MET A 417 CA - CB - CG ANGL. DEV. = 12.6 DEGREES REMARK 500 MET A 417 CB - CG - SD ANGL. DEV. = -29.9 DEGREES REMARK 500 PRO B 120 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 MET B 211 CB - CG - SD ANGL. DEV. = -22.8 DEGREES REMARK 500 MET B 211 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 111 -31.37 -130.29 REMARK 500 GLU A 119 76.53 21.00 REMARK 500 THR A 148 -84.66 42.54 REMARK 500 LYS A 150 56.39 -93.45 REMARK 500 ASP A 201 46.95 -148.74 REMARK 500 ILE A 223 75.25 50.48 REMARK 500 PHE A 271 49.96 -145.15 REMARK 500 CYS A 292 -169.42 -124.72 REMARK 500 TRP A 296 -70.74 -119.30 REMARK 500 ASP A 383 14.05 57.28 REMARK 500 SER A 405 -155.47 -100.23 REMARK 500 MET A 417 -22.87 -148.42 REMARK 500 TRP A 461 -165.33 -163.95 REMARK 500 TRP A 463 79.96 -100.01 REMARK 500 GLU B 119 79.86 46.79 REMARK 500 ASP B 201 46.11 -144.47 REMARK 500 ILE B 223 83.94 45.86 REMARK 500 THR B 226 -159.78 -150.74 REMARK 500 SER B 249 -168.76 -161.78 REMARK 500 ASN B 284 112.57 -160.16 REMARK 500 TRP B 296 -67.97 -120.69 REMARK 500 ASP B 383 12.62 58.67 REMARK 500 SER B 405 -160.24 -103.65 REMARK 500 THR B 416 1.19 -63.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 118 -10.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 629 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 294 O REMARK 620 2 GLY A 298 O 88.9 REMARK 620 3 ASP A 324 OD2 87.0 88.4 REMARK 620 4 TYR A 349 O 85.3 163.4 106.8 REMARK 620 5 HOH A 634 O 100.3 91.1 172.7 74.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 294 O REMARK 620 2 GLY B 298 O 87.1 REMARK 620 3 ASP B 324 OD2 102.7 102.9 REMARK 620 4 TYR B 349 O 94.3 156.0 100.2 REMARK 620 5 HOH B 612 O 164.2 107.5 80.5 69.9 REMARK 620 N 1 2 3 4 DBREF 7E6Q A 82 476 UNP A1ILL9 A1ILL9_I76A2 79 473 DBREF 7E6Q B 82 476 UNP A1ILL9 A1ILL9_I76A2 79 473 SEQRES 1 A 395 PRO GLU PHE LEU ASN ASN THR GLU PRO LEU CYS ASN VAL SEQRES 2 A 395 SER GLY PHE ALA ILE VAL SER LYS ASP ASN GLY ILE ARG SEQRES 3 A 395 ILE GLY SER ARG GLY HIS VAL PHE VAL ILE ARG GLU PRO SEQRES 4 A 395 PHE VAL ALA CYS GLY PRO THR GLU CYS ARG THR PHE PHE SEQRES 5 A 395 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 A 395 ASN THR VAL LYS ASP ARG SER PRO TYR ARG ALA LEU MET SEQRES 7 A 395 SER VAL PRO LEU GLY SER SER PRO ASN ALA TYR GLN ALA SEQRES 8 A 395 LYS PHE GLU SER VAL ALA TRP SER ALA THR ALA CYS HIS SEQRES 9 A 395 ASP GLY LYS LYS TRP LEU ALA VAL GLY ILE SER GLY ALA SEQRES 10 A 395 ASP ASP ASP ALA TYR ALA VAL ILE HIS TYR GLY GLY MET SEQRES 11 A 395 PRO THR ASP VAL VAL ARG SER TRP ARG LYS GLN ILE LEU SEQRES 12 A 395 ARG THR GLN GLU SER SER CYS VAL CYS MET ASN GLY ASN SEQRES 13 A 395 CYS TYR TRP VAL MET THR ASP GLY PRO ALA ASN SER GLN SEQRES 14 A 395 ALA SER TYR LYS ILE PHE LYS SER HIS GLU GLY MET VAL SEQRES 15 A 395 THR ASN GLU ARG GLU VAL SER PHE GLN GLY GLY HIS ILE SEQRES 16 A 395 GLU GLU CYS SER CYS TYR PRO ASN LEU GLY LYS VAL GLU SEQRES 17 A 395 CYS VAL CYS ARG ASP ASN TRP ASN GLY MET ASN ARG PRO SEQRES 18 A 395 ILE LEU ILE PHE ASP GLU ASP LEU ASP TYR GLU VAL GLY SEQRES 19 A 395 TYR LEU CYS ALA GLY ILE PRO THR ASP THR PRO ARG VAL SEQRES 20 A 395 GLN ASP SER SER PHE THR GLY SER CYS THR ASN ALA VAL SEQRES 21 A 395 GLY GLY SER GLY THR ASN ASN TYR GLY VAL LYS GLY PHE SEQRES 22 A 395 GLY PHE ARG GLN GLY ASN SER VAL TRP ALA GLY ARG THR SEQRES 23 A 395 VAL SER ILE SER SER ARG SER GLY PHE GLU ILE LEU LEU SEQRES 24 A 395 ILE GLU ASP GLY TRP ILE ARG THR SER LYS THR ILE VAL SEQRES 25 A 395 LYS LYS VAL GLU VAL LEU ASN ASN LYS ASN TRP SER GLY SEQRES 26 A 395 TYR SER GLY ALA PHE THR ILE PRO ILE THR MET THR SER SEQRES 27 A 395 LYS GLN CYS LEU VAL PRO CYS PHE TRP LEU GLU MET ILE SEQRES 28 A 395 ARG GLY LYS PRO GLU GLU ARG THR SER ILE TRP THR SER SEQRES 29 A 395 SER SER SER THR VAL PHE CYS GLY VAL SER SER GLU VAL SEQRES 30 A 395 PRO GLY TRP SER TRP ASP ASP GLY ALA ILE LEU PRO PHE SEQRES 31 A 395 ASP ILE ASP LYS MET SEQRES 1 B 395 PRO GLU PHE LEU ASN ASN THR GLU PRO LEU CYS ASN VAL SEQRES 2 B 395 SER GLY PHE ALA ILE VAL SER LYS ASP ASN GLY ILE ARG SEQRES 3 B 395 ILE GLY SER ARG GLY HIS VAL PHE VAL ILE ARG GLU PRO SEQRES 4 B 395 PHE VAL ALA CYS GLY PRO THR GLU CYS ARG THR PHE PHE SEQRES 5 B 395 LEU THR GLN GLY ALA LEU LEU ASN ASP LYS HIS SER ASN SEQRES 6 B 395 ASN THR VAL LYS ASP ARG SER PRO TYR ARG ALA LEU MET SEQRES 7 B 395 SER VAL PRO LEU GLY SER SER PRO ASN ALA TYR GLN ALA SEQRES 8 B 395 LYS PHE GLU SER VAL ALA TRP SER ALA THR ALA CYS HIS SEQRES 9 B 395 ASP GLY LYS LYS TRP LEU ALA VAL GLY ILE SER GLY ALA SEQRES 10 B 395 ASP ASP ASP ALA TYR ALA VAL ILE HIS TYR GLY GLY MET SEQRES 11 B 395 PRO THR ASP VAL VAL ARG SER TRP ARG LYS GLN ILE LEU SEQRES 12 B 395 ARG THR GLN GLU SER SER CYS VAL CYS MET ASN GLY ASN SEQRES 13 B 395 CYS TYR TRP VAL MET THR ASP GLY PRO ALA ASN SER GLN SEQRES 14 B 395 ALA SER TYR LYS ILE PHE LYS SER HIS GLU GLY MET VAL SEQRES 15 B 395 THR ASN GLU ARG GLU VAL SER PHE GLN GLY GLY HIS ILE SEQRES 16 B 395 GLU GLU CYS SER CYS TYR PRO ASN LEU GLY LYS VAL GLU SEQRES 17 B 395 CYS VAL CYS ARG ASP ASN TRP ASN GLY MET ASN ARG PRO SEQRES 18 B 395 ILE LEU ILE PHE ASP GLU ASP LEU ASP TYR GLU VAL GLY SEQRES 19 B 395 TYR LEU CYS ALA GLY ILE PRO THR ASP THR PRO ARG VAL SEQRES 20 B 395 GLN ASP SER SER PHE THR GLY SER CYS THR ASN ALA VAL SEQRES 21 B 395 GLY GLY SER GLY THR ASN ASN TYR GLY VAL LYS GLY PHE SEQRES 22 B 395 GLY PHE ARG GLN GLY ASN SER VAL TRP ALA GLY ARG THR SEQRES 23 B 395 VAL SER ILE SER SER ARG SER GLY PHE GLU ILE LEU LEU SEQRES 24 B 395 ILE GLU ASP GLY TRP ILE ARG THR SER LYS THR ILE VAL SEQRES 25 B 395 LYS LYS VAL GLU VAL LEU ASN ASN LYS ASN TRP SER GLY SEQRES 26 B 395 TYR SER GLY ALA PHE THR ILE PRO ILE THR MET THR SER SEQRES 27 B 395 LYS GLN CYS LEU VAL PRO CYS PHE TRP LEU GLU MET ILE SEQRES 28 B 395 ARG GLY LYS PRO GLU GLU ARG THR SER ILE TRP THR SER SEQRES 29 B 395 SER SER SER THR VAL PHE CYS GLY VAL SER SER GLU VAL SEQRES 30 B 395 PRO GLY TRP SER TRP ASP ASP GLY ALA ILE LEU PRO PHE SEQRES 31 B 395 ASP ILE ASP LYS MET HET CA A 501 1 HET NAG A 502 14 HET NAG A 503 14 HET HZF A 504 30 HET CA B 501 1 HET NAG B 502 14 HET HZF B 503 30 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM HZF (3R,4R,5S)-4-ACETAMIDO-3-PENTAN-3-YLOXY-5-(4-PHENYL-1, HETNAM 2 HZF 2,3-TRIAZOL-1-YL)CYCLOHEXENE-1-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CA 2(CA 2+) FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 6 HZF 2(C22 H28 N4 O4) FORMUL 10 HOH *78(H2 O) HELIX 1 AA1 ASN A 104 GLY A 109 1 6 HELIX 2 AA2 ASP A 142 ASN A 146 5 5 HELIX 3 AA3 GLN A 329 PHE A 333 5 5 HELIX 4 AA4 PHE A 471 LYS A 475 5 5 HELIX 5 AA5 ASN B 104 SER B 110 1 7 HELIX 6 AA6 ASP B 142 ASN B 146 5 5 HELIX 7 AA7 ALA B 198 ASP B 201 5 4 HELIX 8 AA8 PRO B 414 SER B 419 1 6 HELIX 9 AA9 PHE B 471 LYS B 475 5 5 SHEET 1 AA1 4 GLY A 96 LYS A 102 0 SHEET 2 AA1 4 THR A 444 VAL A 454 -1 O VAL A 450 N VAL A 100 SHEET 3 AA1 4 VAL A 424 GLY A 434 -1 N LEU A 429 O THR A 449 SHEET 4 AA1 4 SER A 408 ILE A 413 -1 N PHE A 411 O CYS A 426 SHEET 1 AA2 3 PHE A 115 ARG A 118 0 SHEET 2 AA2 3 CYS A 129 LEU A 139 -1 O ALA A 138 N VAL A 116 SHEET 3 AA2 3 VAL A 122 CYS A 124 -1 N ALA A 123 O ARG A 130 SHEET 1 AA3 4 PHE A 115 ARG A 118 0 SHEET 2 AA3 4 CYS A 129 LEU A 139 -1 O ALA A 138 N VAL A 116 SHEET 3 AA3 4 ALA A 157 PRO A 162 -1 O ALA A 157 N THR A 135 SHEET 4 AA3 4 LYS A 173 VAL A 177 -1 O SER A 176 N LEU A 158 SHEET 1 AA4 4 SER A 180 HIS A 185 0 SHEET 2 AA4 4 TRP A 190 SER A 196 -1 O LEU A 191 N CYS A 184 SHEET 3 AA4 4 TYR A 203 TYR A 208 -1 O HIS A 207 N ALA A 192 SHEET 4 AA4 4 MET A 211 ARG A 217 -1 O VAL A 216 N ALA A 204 SHEET 1 AA5 3 ARG A 225 THR A 226 0 SHEET 2 AA5 3 ASN A 237 ASP A 244 -1 O THR A 243 N ARG A 225 SHEET 3 AA5 3 VAL A 232 MET A 234 -1 N VAL A 232 O TYR A 239 SHEET 1 AA6 4 ARG A 225 THR A 226 0 SHEET 2 AA6 4 ASN A 237 ASP A 244 -1 O THR A 243 N ARG A 225 SHEET 3 AA6 4 SER A 252 HIS A 259 -1 O PHE A 256 N TRP A 240 SHEET 4 AA6 4 MET A 262 VAL A 269 -1 O VAL A 269 N TYR A 253 SHEET 1 AA7 4 GLU A 277 ASN A 284 0 SHEET 2 AA7 4 LYS A 287 ARG A 293 -1 O VAL A 291 N SER A 280 SHEET 3 AA7 4 PRO A 302 PHE A 306 -1 O PHE A 306 N VAL A 288 SHEET 4 AA7 4 TYR A 312 TYR A 316 -1 O GLY A 315 N ILE A 303 SHEET 1 AA8 4 GLY A 355 GLN A 358 0 SHEET 2 AA8 4 SER A 361 ARG A 366 -1 O SER A 361 N GLN A 358 SHEET 3 AA8 4 SER A 374 ILE A 381 -1 O LEU A 379 N ALA A 364 SHEET 4 AA8 4 ILE A 392 TRP A 404 -1 O LEU A 399 N PHE A 376 SHEET 1 AA9 4 GLY B 96 LYS B 102 0 SHEET 2 AA9 4 THR B 444 VAL B 454 -1 O VAL B 450 N VAL B 100 SHEET 3 AA9 4 VAL B 424 GLY B 434 -1 N PRO B 425 O GLY B 453 SHEET 4 AA9 4 SER B 408 ILE B 413 -1 N PHE B 411 O CYS B 426 SHEET 1 AB1 4 PHE B 115 CYS B 124 0 SHEET 2 AB1 4 CYS B 129 LEU B 139 -1 O PHE B 132 N PHE B 121 SHEET 3 AB1 4 ALA B 157 PRO B 162 -1 O ALA B 157 N THR B 135 SHEET 4 AB1 4 LYS B 173 VAL B 177 -1 O SER B 176 N LEU B 158 SHEET 1 AB2 4 SER B 180 HIS B 185 0 SHEET 2 AB2 4 TRP B 190 SER B 196 -1 O LEU B 191 N CYS B 184 SHEET 3 AB2 4 TYR B 203 TYR B 208 -1 O HIS B 207 N ALA B 192 SHEET 4 AB2 4 MET B 211 ARG B 217 -1 O VAL B 216 N ALA B 204 SHEET 1 AB3 4 VAL B 232 MET B 234 0 SHEET 2 AB3 4 ASN B 237 ASP B 244 -1 O TYR B 239 N VAL B 232 SHEET 3 AB3 4 SER B 252 HIS B 259 -1 O PHE B 256 N TRP B 240 SHEET 4 AB3 4 MET B 262 VAL B 269 -1 O VAL B 269 N TYR B 253 SHEET 1 AB4 4 GLU B 277 ASN B 284 0 SHEET 2 AB4 4 LYS B 287 ARG B 293 -1 O VAL B 291 N SER B 280 SHEET 3 AB4 4 PRO B 302 PHE B 306 -1 O LEU B 304 N CYS B 290 SHEET 4 AB4 4 TYR B 312 TYR B 316 -1 O GLU B 313 N ILE B 305 SHEET 1 AB5 4 GLY B 355 GLN B 358 0 SHEET 2 AB5 4 SER B 361 ARG B 366 -1 O SER B 361 N GLN B 358 SHEET 3 AB5 4 SER B 374 ILE B 381 -1 O LEU B 379 N ALA B 364 SHEET 4 AB5 4 ILE B 392 TRP B 404 -1 O LYS B 394 N LEU B 380 SSBOND 1 CYS A 92 CYS A 422 1555 1555 2.03 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.03 SSBOND 3 CYS A 184 CYS A 231 1555 1555 2.03 SSBOND 4 CYS A 233 CYS A 238 1555 1555 2.04 SSBOND 5 CYS A 279 CYS A 292 1555 1555 2.09 SSBOND 6 CYS A 281 CYS A 290 1555 1555 2.04 SSBOND 7 CYS A 318 CYS A 337 1555 1555 2.04 SSBOND 8 CYS A 426 CYS A 452 1555 1555 2.03 SSBOND 9 CYS B 92 CYS B 422 1555 1555 2.04 SSBOND 10 CYS B 124 CYS B 129 1555 1555 2.04 SSBOND 11 CYS B 184 CYS B 231 1555 1555 2.03 SSBOND 12 CYS B 233 CYS B 238 1555 1555 2.04 SSBOND 13 CYS B 279 CYS B 292 1555 1555 2.04 SSBOND 14 CYS B 281 CYS B 290 1555 1555 2.04 SSBOND 15 CYS B 318 CYS B 337 1555 1555 2.03 SSBOND 16 CYS B 426 CYS B 452 1555 1555 2.04 LINK ND2 ASN A 93 C1 NAG A 502 1555 1555 1.43 LINK ND2 ASN A 146 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN B 146 C1 NAG B 502 1555 1555 1.44 LINK O ASP A 294 CA CA A 501 1555 1555 2.30 LINK O GLY A 298 CA CA A 501 1555 1555 2.45 LINK OD2 ASP A 324 CA CA A 501 1555 1555 2.53 LINK O TYR A 349 CA CA A 501 1555 1555 2.41 LINK CA CA A 501 O HOH A 634 1555 1555 2.34 LINK O ASP B 294 CA CA B 501 1555 1555 2.31 LINK O GLY B 298 CA CA B 501 1555 1555 2.45 LINK OD2 ASP B 324 CA CA B 501 1555 1555 2.60 LINK O TYR B 349 CA CA B 501 1555 1555 2.42 LINK CA CA B 501 O HOH B 612 1555 1555 2.34 CISPEP 1 THR A 325 PRO A 326 0 4.72 CISPEP 2 LYS A 435 PRO A 436 0 3.55 CISPEP 3 LEU A 469 PRO A 470 0 -0.19 CISPEP 4 THR B 325 PRO B 326 0 3.19 CISPEP 5 LYS B 435 PRO B 436 0 3.82 CISPEP 6 LEU B 469 PRO B 470 0 2.26 CRYST1 109.064 109.064 71.149 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009169 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014055 0.00000