HEADER SUGAR BINDING PROTEIN 26-FEB-21 7E7M TITLE CRYSTAL STRUCTURE ANALYSIS OF THE STREPTOCOCCUS AGALACTIAE RIBOSE TITLE 2 BINDING PROTEIN RBSB COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-RIBOSE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: D-RIBOSE TRANSPORTER SUBUNIT RBSB,RIBOSE ABC TRANSPORTER, COMPND 5 PERIPLASMIC D-RIBOSE-BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE ZQ0910; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: RBSB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS PROTEIN-RIBOSE COMPLEX, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.X.PAN,B.WANG,L.Y.YANG,D.F.YANG REVDAT 2 29-NOV-23 7E7M 1 REMARK REVDAT 1 02-MAR-22 7E7M 0 JRNL AUTH L.X.PAN,B.WANG,L.Y.YANG,D.F.YANG JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF THE STREPTOCOCCUS AGALACTIAE JRNL TITL 2 RIBOSE BINDING PROTEIN RBSB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 22646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1139 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5900 - 5.7000 0.83 2592 142 0.1652 0.2089 REMARK 3 2 5.6900 - 4.5200 0.88 2645 160 0.1864 0.2114 REMARK 3 3 4.5200 - 3.9500 0.90 2646 128 0.1834 0.2404 REMARK 3 4 3.9500 - 3.5900 0.92 2695 129 0.2101 0.2586 REMARK 3 5 3.5900 - 3.3300 0.93 2707 152 0.2408 0.3221 REMARK 3 6 3.3300 - 3.1400 0.94 2765 146 0.2673 0.3283 REMARK 3 7 3.1400 - 2.9800 0.95 2740 134 0.2721 0.3276 REMARK 3 8 2.9800 - 2.8500 0.95 2717 148 0.3015 0.3413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7E7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22672 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 39.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IOY REMARK 200 REMARK 200 REMARK: PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JEFFAMIME ED-2001, PH 7.0, REMARK 280 EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.81550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.92800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.92800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.81550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PHE A 3 REMARK 465 GLY A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 PHE A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 MET A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 ILE A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 ALA A 22 REMARK 465 CYS A 23 REMARK 465 GLY A 24 REMARK 465 LYS A 25 REMARK 465 THR A 26 REMARK 465 GLY A 27 REMARK 465 LEU A 28 REMARK 465 GLY A 29 REMARK 465 ASN A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 GLU A 33 REMARK 465 ASN A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 LYS A 37 REMARK 465 ASN A 38 REMARK 465 VAL A 39 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PHE B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 LYS B 6 REMARK 465 LEU B 7 REMARK 465 GLY B 8 REMARK 465 PHE B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 MET B 14 REMARK 465 SER B 15 REMARK 465 ILE B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 ILE B 19 REMARK 465 LEU B 20 REMARK 465 GLY B 21 REMARK 465 ALA B 22 REMARK 465 CYS B 23 REMARK 465 GLY B 24 REMARK 465 LYS B 25 REMARK 465 THR B 26 REMARK 465 GLY B 27 REMARK 465 LEU B 28 REMARK 465 GLY B 29 REMARK 465 ASN B 30 REMARK 465 SER B 31 REMARK 465 SER B 32 REMARK 465 GLU B 33 REMARK 465 ASN B 34 REMARK 465 SER B 35 REMARK 465 THR B 36 REMARK 465 LYS B 37 REMARK 465 ASN B 38 REMARK 465 VAL B 39 REMARK 465 THR B 40 REMARK 465 LYS B 41 REMARK 465 LYS B 42 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 PHE C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 LEU C 7 REMARK 465 GLY C 8 REMARK 465 PHE C 9 REMARK 465 LEU C 10 REMARK 465 ALA C 11 REMARK 465 LEU C 12 REMARK 465 LEU C 13 REMARK 465 MET C 14 REMARK 465 SER C 15 REMARK 465 ILE C 16 REMARK 465 VAL C 17 REMARK 465 LEU C 18 REMARK 465 ILE C 19 REMARK 465 LEU C 20 REMARK 465 GLY C 21 REMARK 465 ALA C 22 REMARK 465 CYS C 23 REMARK 465 GLY C 24 REMARK 465 LYS C 25 REMARK 465 THR C 26 REMARK 465 GLY C 27 REMARK 465 LEU C 28 REMARK 465 GLY C 29 REMARK 465 ASN C 30 REMARK 465 SER C 31 REMARK 465 SER C 32 REMARK 465 GLU C 33 REMARK 465 ASN C 34 REMARK 465 SER C 35 REMARK 465 THR C 36 REMARK 465 LYS C 37 REMARK 465 ASN C 38 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 PHE D 3 REMARK 465 GLY D 4 REMARK 465 LYS D 5 REMARK 465 LYS D 6 REMARK 465 LEU D 7 REMARK 465 GLY D 8 REMARK 465 PHE D 9 REMARK 465 LEU D 10 REMARK 465 ALA D 11 REMARK 465 LEU D 12 REMARK 465 LEU D 13 REMARK 465 MET D 14 REMARK 465 SER D 15 REMARK 465 ILE D 16 REMARK 465 VAL D 17 REMARK 465 LEU D 18 REMARK 465 ILE D 19 REMARK 465 LEU D 20 REMARK 465 GLY D 21 REMARK 465 ALA D 22 REMARK 465 CYS D 23 REMARK 465 GLY D 24 REMARK 465 LYS D 25 REMARK 465 THR D 26 REMARK 465 GLY D 27 REMARK 465 LEU D 28 REMARK 465 GLY D 29 REMARK 465 ASN D 30 REMARK 465 SER D 31 REMARK 465 SER D 32 REMARK 465 GLU D 33 REMARK 465 ASN D 34 REMARK 465 SER D 35 REMARK 465 THR D 36 REMARK 465 LYS D 37 REMARK 465 ASN D 38 REMARK 465 VAL D 39 REMARK 465 THR D 40 REMARK 465 LYS D 41 REMARK 465 LYS D 42 REMARK 465 SER D 43 REMARK 465 ALA D 44 REMARK 465 LYS D 45 REMARK 465 ASP D 46 REMARK 465 LEU D 47 REMARK 465 LYS D 48 REMARK 465 LEU D 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 222 CG CD OE1 NE2 REMARK 470 ASN C 74 CG OD1 ND2 REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 LYS C 225 CG CD CE NZ REMARK 470 LYS C 319 CG CD CE NZ REMARK 470 LYS D 299 CG CD CE NZ REMARK 470 LYS D 300 CG CD CE NZ REMARK 470 LYS D 303 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 134 -45.00 68.82 REMARK 500 LYS A 197 -7.03 66.92 REMARK 500 ASP A 259 -47.34 146.15 REMARK 500 TYR A 320 16.35 58.66 REMARK 500 ASP B 134 -41.80 65.60 REMARK 500 GLN B 222 -71.32 -55.94 REMARK 500 ASP B 259 -41.43 159.38 REMARK 500 THR B 313 -165.41 -117.48 REMARK 500 ASN B 316 29.31 -144.53 REMARK 500 ASP C 134 -40.85 67.26 REMARK 500 MET C 200 88.45 -66.36 REMARK 500 ASP C 259 179.11 93.51 REMARK 500 LYS C 299 98.74 -69.38 REMARK 500 THR C 313 -161.28 -114.55 REMARK 500 ASN C 316 39.45 -152.77 REMARK 500 ASP D 134 -29.46 70.36 REMARK 500 LYS D 164 -62.43 -90.39 REMARK 500 ASN D 252 55.89 -115.97 REMARK 500 ASP D 259 -50.63 152.26 REMARK 500 THR D 313 -163.25 -118.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RIP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RIP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RIP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RIP D 401 DBREF1 7E7M A 1 322 UNP A0A6H3FYP2_STRAG DBREF2 7E7M A A0A6H3FYP2 1 322 DBREF1 7E7M B 1 322 UNP A0A6H3FYP2_STRAG DBREF2 7E7M B A0A6H3FYP2 1 322 DBREF1 7E7M C 1 322 UNP A0A6H3FYP2_STRAG DBREF2 7E7M C A0A6H3FYP2 1 322 DBREF1 7E7M D 1 322 UNP A0A6H3FYP2_STRAG DBREF2 7E7M D A0A6H3FYP2 1 322 SEQADV 7E7M TYR A 295 UNP A0A6H3FYP HIS 295 CONFLICT SEQADV 7E7M TYR B 295 UNP A0A6H3FYP HIS 295 CONFLICT SEQADV 7E7M TYR C 295 UNP A0A6H3FYP HIS 295 CONFLICT SEQADV 7E7M TYR D 295 UNP A0A6H3FYP HIS 295 CONFLICT SEQRES 1 A 322 MET LYS PHE GLY LYS LYS LEU GLY PHE LEU ALA LEU LEU SEQRES 2 A 322 MET SER ILE VAL LEU ILE LEU GLY ALA CYS GLY LYS THR SEQRES 3 A 322 GLY LEU GLY ASN SER SER GLU ASN SER THR LYS ASN VAL SEQRES 4 A 322 THR LYS LYS SER ALA LYS ASP LEU LYS LEU GLY VAL SER SEQRES 5 A 322 ILE SER THR THR ASN ASN PRO TYR PHE VAL ALA MET LYS SEQRES 6 A 322 ASP GLY ILE ASP LYS TYR ALA SER ASN LYS LYS ILE SER SEQRES 7 A 322 ILE LYS VAL ALA ASP ALA GLN ASP ASP ALA ALA ARG GLN SEQRES 8 A 322 ALA ASP ASP VAL GLN ASN PHE ILE SER GLN ASN VAL ASP SEQRES 9 A 322 ALA ILE LEU ILE ASN PRO VAL ASP SER LYS ALA ILE VAL SEQRES 10 A 322 THR ALA ILE LYS SER ALA ASN ASN ALA ASN ILE PRO VAL SEQRES 11 A 322 ILE LEU MET ASP ARG GLY SER GLU GLY GLY LYS VAL LEU SEQRES 12 A 322 THR THR VAL ALA SER ASP ASN VAL ALA ALA GLY LYS MET SEQRES 13 A 322 ALA ALA ASP TYR ALA VAL LYS LYS LEU GLY LYS LYS ALA SEQRES 14 A 322 LYS ALA PHE GLU LEU SER GLY VAL PRO GLY ALA SER ALA SEQRES 15 A 322 THR VAL ASP ARG GLY LYS GLY PHE HIS SER VAL ALA LYS SEQRES 16 A 322 SER LYS LEU ASP MET LEU SER SER GLN SER ALA ASN PHE SEQRES 17 A 322 ASP ARG ALA LYS ALA LEU ASN THR THR GLN ASN MET ILE SEQRES 18 A 322 GLN GLY HIS LYS ASP VAL GLN ILE ILE PHE ALA GLN ASN SEQRES 19 A 322 ASP GLU MET ALA LEU GLY ALA ALA GLN ALA VAL LYS SER SEQRES 20 A 322 ALA GLY LEU GLN ASN VAL LEU ILE VAL GLY ILE ASP GLY SEQRES 21 A 322 GLN PRO ASP ALA HIS ASP ALA ILE LYS LYS GLY ASP ILE SEQRES 22 A 322 SER ALA THR ILE ALA GLN GLN PRO ALA LYS MET GLY GLU SEQRES 23 A 322 ILE ALA ILE GLN ALA ALA ILE ASP TYR TYR LYS GLY LYS SEQRES 24 A 322 LYS VAL GLU LYS GLU THR ILE SER PRO ILE TYR LEU VAL SEQRES 25 A 322 THR LYS ASP ASN VAL GLU LYS TYR ASN TRP SEQRES 1 B 322 MET LYS PHE GLY LYS LYS LEU GLY PHE LEU ALA LEU LEU SEQRES 2 B 322 MET SER ILE VAL LEU ILE LEU GLY ALA CYS GLY LYS THR SEQRES 3 B 322 GLY LEU GLY ASN SER SER GLU ASN SER THR LYS ASN VAL SEQRES 4 B 322 THR LYS LYS SER ALA LYS ASP LEU LYS LEU GLY VAL SER SEQRES 5 B 322 ILE SER THR THR ASN ASN PRO TYR PHE VAL ALA MET LYS SEQRES 6 B 322 ASP GLY ILE ASP LYS TYR ALA SER ASN LYS LYS ILE SER SEQRES 7 B 322 ILE LYS VAL ALA ASP ALA GLN ASP ASP ALA ALA ARG GLN SEQRES 8 B 322 ALA ASP ASP VAL GLN ASN PHE ILE SER GLN ASN VAL ASP SEQRES 9 B 322 ALA ILE LEU ILE ASN PRO VAL ASP SER LYS ALA ILE VAL SEQRES 10 B 322 THR ALA ILE LYS SER ALA ASN ASN ALA ASN ILE PRO VAL SEQRES 11 B 322 ILE LEU MET ASP ARG GLY SER GLU GLY GLY LYS VAL LEU SEQRES 12 B 322 THR THR VAL ALA SER ASP ASN VAL ALA ALA GLY LYS MET SEQRES 13 B 322 ALA ALA ASP TYR ALA VAL LYS LYS LEU GLY LYS LYS ALA SEQRES 14 B 322 LYS ALA PHE GLU LEU SER GLY VAL PRO GLY ALA SER ALA SEQRES 15 B 322 THR VAL ASP ARG GLY LYS GLY PHE HIS SER VAL ALA LYS SEQRES 16 B 322 SER LYS LEU ASP MET LEU SER SER GLN SER ALA ASN PHE SEQRES 17 B 322 ASP ARG ALA LYS ALA LEU ASN THR THR GLN ASN MET ILE SEQRES 18 B 322 GLN GLY HIS LYS ASP VAL GLN ILE ILE PHE ALA GLN ASN SEQRES 19 B 322 ASP GLU MET ALA LEU GLY ALA ALA GLN ALA VAL LYS SER SEQRES 20 B 322 ALA GLY LEU GLN ASN VAL LEU ILE VAL GLY ILE ASP GLY SEQRES 21 B 322 GLN PRO ASP ALA HIS ASP ALA ILE LYS LYS GLY ASP ILE SEQRES 22 B 322 SER ALA THR ILE ALA GLN GLN PRO ALA LYS MET GLY GLU SEQRES 23 B 322 ILE ALA ILE GLN ALA ALA ILE ASP TYR TYR LYS GLY LYS SEQRES 24 B 322 LYS VAL GLU LYS GLU THR ILE SER PRO ILE TYR LEU VAL SEQRES 25 B 322 THR LYS ASP ASN VAL GLU LYS TYR ASN TRP SEQRES 1 C 322 MET LYS PHE GLY LYS LYS LEU GLY PHE LEU ALA LEU LEU SEQRES 2 C 322 MET SER ILE VAL LEU ILE LEU GLY ALA CYS GLY LYS THR SEQRES 3 C 322 GLY LEU GLY ASN SER SER GLU ASN SER THR LYS ASN VAL SEQRES 4 C 322 THR LYS LYS SER ALA LYS ASP LEU LYS LEU GLY VAL SER SEQRES 5 C 322 ILE SER THR THR ASN ASN PRO TYR PHE VAL ALA MET LYS SEQRES 6 C 322 ASP GLY ILE ASP LYS TYR ALA SER ASN LYS LYS ILE SER SEQRES 7 C 322 ILE LYS VAL ALA ASP ALA GLN ASP ASP ALA ALA ARG GLN SEQRES 8 C 322 ALA ASP ASP VAL GLN ASN PHE ILE SER GLN ASN VAL ASP SEQRES 9 C 322 ALA ILE LEU ILE ASN PRO VAL ASP SER LYS ALA ILE VAL SEQRES 10 C 322 THR ALA ILE LYS SER ALA ASN ASN ALA ASN ILE PRO VAL SEQRES 11 C 322 ILE LEU MET ASP ARG GLY SER GLU GLY GLY LYS VAL LEU SEQRES 12 C 322 THR THR VAL ALA SER ASP ASN VAL ALA ALA GLY LYS MET SEQRES 13 C 322 ALA ALA ASP TYR ALA VAL LYS LYS LEU GLY LYS LYS ALA SEQRES 14 C 322 LYS ALA PHE GLU LEU SER GLY VAL PRO GLY ALA SER ALA SEQRES 15 C 322 THR VAL ASP ARG GLY LYS GLY PHE HIS SER VAL ALA LYS SEQRES 16 C 322 SER LYS LEU ASP MET LEU SER SER GLN SER ALA ASN PHE SEQRES 17 C 322 ASP ARG ALA LYS ALA LEU ASN THR THR GLN ASN MET ILE SEQRES 18 C 322 GLN GLY HIS LYS ASP VAL GLN ILE ILE PHE ALA GLN ASN SEQRES 19 C 322 ASP GLU MET ALA LEU GLY ALA ALA GLN ALA VAL LYS SER SEQRES 20 C 322 ALA GLY LEU GLN ASN VAL LEU ILE VAL GLY ILE ASP GLY SEQRES 21 C 322 GLN PRO ASP ALA HIS ASP ALA ILE LYS LYS GLY ASP ILE SEQRES 22 C 322 SER ALA THR ILE ALA GLN GLN PRO ALA LYS MET GLY GLU SEQRES 23 C 322 ILE ALA ILE GLN ALA ALA ILE ASP TYR TYR LYS GLY LYS SEQRES 24 C 322 LYS VAL GLU LYS GLU THR ILE SER PRO ILE TYR LEU VAL SEQRES 25 C 322 THR LYS ASP ASN VAL GLU LYS TYR ASN TRP SEQRES 1 D 322 MET LYS PHE GLY LYS LYS LEU GLY PHE LEU ALA LEU LEU SEQRES 2 D 322 MET SER ILE VAL LEU ILE LEU GLY ALA CYS GLY LYS THR SEQRES 3 D 322 GLY LEU GLY ASN SER SER GLU ASN SER THR LYS ASN VAL SEQRES 4 D 322 THR LYS LYS SER ALA LYS ASP LEU LYS LEU GLY VAL SER SEQRES 5 D 322 ILE SER THR THR ASN ASN PRO TYR PHE VAL ALA MET LYS SEQRES 6 D 322 ASP GLY ILE ASP LYS TYR ALA SER ASN LYS LYS ILE SER SEQRES 7 D 322 ILE LYS VAL ALA ASP ALA GLN ASP ASP ALA ALA ARG GLN SEQRES 8 D 322 ALA ASP ASP VAL GLN ASN PHE ILE SER GLN ASN VAL ASP SEQRES 9 D 322 ALA ILE LEU ILE ASN PRO VAL ASP SER LYS ALA ILE VAL SEQRES 10 D 322 THR ALA ILE LYS SER ALA ASN ASN ALA ASN ILE PRO VAL SEQRES 11 D 322 ILE LEU MET ASP ARG GLY SER GLU GLY GLY LYS VAL LEU SEQRES 12 D 322 THR THR VAL ALA SER ASP ASN VAL ALA ALA GLY LYS MET SEQRES 13 D 322 ALA ALA ASP TYR ALA VAL LYS LYS LEU GLY LYS LYS ALA SEQRES 14 D 322 LYS ALA PHE GLU LEU SER GLY VAL PRO GLY ALA SER ALA SEQRES 15 D 322 THR VAL ASP ARG GLY LYS GLY PHE HIS SER VAL ALA LYS SEQRES 16 D 322 SER LYS LEU ASP MET LEU SER SER GLN SER ALA ASN PHE SEQRES 17 D 322 ASP ARG ALA LYS ALA LEU ASN THR THR GLN ASN MET ILE SEQRES 18 D 322 GLN GLY HIS LYS ASP VAL GLN ILE ILE PHE ALA GLN ASN SEQRES 19 D 322 ASP GLU MET ALA LEU GLY ALA ALA GLN ALA VAL LYS SER SEQRES 20 D 322 ALA GLY LEU GLN ASN VAL LEU ILE VAL GLY ILE ASP GLY SEQRES 21 D 322 GLN PRO ASP ALA HIS ASP ALA ILE LYS LYS GLY ASP ILE SEQRES 22 D 322 SER ALA THR ILE ALA GLN GLN PRO ALA LYS MET GLY GLU SEQRES 23 D 322 ILE ALA ILE GLN ALA ALA ILE ASP TYR TYR LYS GLY LYS SEQRES 24 D 322 LYS VAL GLU LYS GLU THR ILE SER PRO ILE TYR LEU VAL SEQRES 25 D 322 THR LYS ASP ASN VAL GLU LYS TYR ASN TRP HET RIP A 401 10 HET RIP B 401 10 HET RIP C 401 10 HET RIP D 401 10 HETNAM RIP BETA-D-RIBOPYRANOSE HETSYN RIP BETA-D-RIBOSE; D-RIBOSE; RIBOSE; RIBOSE(PYRANOSE FORM) FORMUL 5 RIP 4(C5 H10 O5) FORMUL 9 HOH *8(H2 O) HELIX 1 AA1 ASN A 58 LYS A 75 1 18 HELIX 2 AA2 ASP A 87 ASN A 102 1 16 HELIX 3 AA3 ALA A 115 ALA A 126 1 12 HELIX 4 AA4 ASP A 149 GLY A 166 1 18 HELIX 5 AA5 ALA A 180 VAL A 193 1 14 HELIX 6 AA6 ASP A 209 HIS A 224 1 16 HELIX 7 AA7 ASN A 234 ALA A 248 1 15 HELIX 8 AA8 GLN A 261 LYS A 270 1 10 HELIX 9 AA9 GLN A 280 TYR A 296 1 17 HELIX 10 AB1 ASN B 58 LYS B 75 1 18 HELIX 11 AB2 ASP B 87 ASN B 102 1 16 HELIX 12 AB3 ILE B 116 ALA B 126 1 11 HELIX 13 AB4 ASP B 149 GLY B 166 1 18 HELIX 14 AB5 ALA B 180 LYS B 197 1 18 HELIX 15 AB6 ASP B 209 GLN B 222 1 14 HELIX 16 AB7 ASN B 234 SER B 247 1 14 HELIX 17 AB8 GLN B 261 LYS B 270 1 10 HELIX 18 AB9 GLN B 280 TYR B 296 1 17 HELIX 19 AC1 THR B 313 VAL B 317 5 5 HELIX 20 AC2 SER C 43 ASP C 46 5 4 HELIX 21 AC3 ASN C 58 LYS C 75 1 18 HELIX 22 AC4 ASP C 87 ASN C 102 1 16 HELIX 23 AC5 ALA C 115 ALA C 126 1 12 HELIX 24 AC6 ASP C 149 GLY C 166 1 18 HELIX 25 AC7 ALA C 180 LEU C 198 1 19 HELIX 26 AC8 ASP C 209 HIS C 224 1 16 HELIX 27 AC9 ASN C 234 GLY C 249 1 16 HELIX 28 AD1 GLN C 261 LYS C 270 1 10 HELIX 29 AD2 GLN C 280 TYR C 296 1 17 HELIX 30 AD3 THR C 313 VAL C 317 5 5 HELIX 31 AD4 ASN D 58 LYS D 75 1 18 HELIX 32 AD5 ASP D 87 ASN D 102 1 16 HELIX 33 AD6 ILE D 116 ALA D 126 1 11 HELIX 34 AD7 ASP D 149 GLY D 166 1 18 HELIX 35 AD8 ALA D 180 LYS D 197 1 18 HELIX 36 AD9 ASP D 209 HIS D 224 1 16 HELIX 37 AE1 ASN D 234 SER D 247 1 14 HELIX 38 AE2 GLN D 261 GLY D 271 1 11 HELIX 39 AE3 GLN D 280 TYR D 296 1 17 SHEET 1 AA1 6 SER A 78 ASP A 83 0 SHEET 2 AA1 6 LYS A 48 ILE A 53 1 N VAL A 51 O ALA A 82 SHEET 3 AA1 6 ALA A 105 ILE A 108 1 O LEU A 107 N GLY A 50 SHEET 4 AA1 6 VAL A 130 MET A 133 1 O ILE A 131 N ILE A 108 SHEET 5 AA1 6 THR A 144 SER A 148 1 O VAL A 146 N LEU A 132 SHEET 6 AA1 6 GLU A 304 SER A 307 1 O SER A 307 N ALA A 147 SHEET 1 AA2 6 LEU A 198 SER A 205 0 SHEET 2 AA2 6 ALA A 169 SER A 175 1 N ALA A 171 O LEU A 201 SHEET 3 AA2 6 ILE A 229 ALA A 232 1 O PHE A 231 N LEU A 174 SHEET 4 AA2 6 LEU A 254 ASP A 259 1 O VAL A 256 N ALA A 232 SHEET 5 AA2 6 ALA A 275 ALA A 278 1 O ILE A 277 N ASP A 259 SHEET 6 AA2 6 TYR A 310 VAL A 312 -1 O TYR A 310 N ALA A 278 SHEET 1 AA3 6 SER B 78 ASP B 83 0 SHEET 2 AA3 6 LYS B 48 ILE B 53 1 N LEU B 49 O SER B 78 SHEET 3 AA3 6 ALA B 105 ILE B 108 1 O LEU B 107 N GLY B 50 SHEET 4 AA3 6 VAL B 130 MET B 133 1 O ILE B 131 N ILE B 106 SHEET 5 AA3 6 THR B 144 SER B 148 1 O VAL B 146 N LEU B 132 SHEET 6 AA3 6 THR B 305 SER B 307 1 O THR B 305 N THR B 145 SHEET 1 AA4 6 LEU B 198 SER B 205 0 SHEET 2 AA4 6 ALA B 169 SER B 175 1 N ALA B 169 O ASP B 199 SHEET 3 AA4 6 ILE B 229 ALA B 232 1 O PHE B 231 N PHE B 172 SHEET 4 AA4 6 LEU B 254 ASP B 259 1 O LEU B 254 N ILE B 230 SHEET 5 AA4 6 ALA B 275 ALA B 278 1 O ILE B 277 N ASP B 259 SHEET 6 AA4 6 TYR B 310 VAL B 312 -1 O TYR B 310 N ALA B 278 SHEET 1 AA5 6 SER C 78 ASP C 83 0 SHEET 2 AA5 6 LYS C 48 ILE C 53 1 N VAL C 51 O LYS C 80 SHEET 3 AA5 6 ALA C 105 ILE C 108 1 O LEU C 107 N GLY C 50 SHEET 4 AA5 6 VAL C 130 MET C 133 1 O ILE C 131 N ILE C 106 SHEET 5 AA5 6 THR C 144 SER C 148 1 O THR C 144 N LEU C 132 SHEET 6 AA5 6 GLU C 304 SER C 307 1 O SER C 307 N ALA C 147 SHEET 1 AA6 6 ASP C 199 SER C 205 0 SHEET 2 AA6 6 LYS C 170 SER C 175 1 N SER C 175 O GLN C 204 SHEET 3 AA6 6 ILE C 229 ALA C 232 1 O PHE C 231 N LEU C 174 SHEET 4 AA6 6 LEU C 254 ILE C 258 1 O VAL C 256 N ALA C 232 SHEET 5 AA6 6 ALA C 275 ALA C 278 1 N ALA C 275 O ILE C 255 SHEET 6 AA6 6 TYR C 310 VAL C 312 -1 O VAL C 312 N THR C 276 SHEET 1 AA7 6 VAL D 81 ASP D 83 0 SHEET 2 AA7 6 VAL D 51 ILE D 53 1 N ILE D 53 O ALA D 82 SHEET 3 AA7 6 ILE D 106 ILE D 108 1 O LEU D 107 N SER D 52 SHEET 4 AA7 6 VAL D 130 MET D 133 1 O ILE D 131 N ILE D 108 SHEET 5 AA7 6 THR D 144 SER D 148 1 O THR D 144 N LEU D 132 SHEET 6 AA7 6 THR D 305 SER D 307 1 O SER D 307 N ALA D 147 SHEET 1 AA8 6 LEU D 198 SER D 205 0 SHEET 2 AA8 6 ALA D 169 SER D 175 1 N ALA D 171 O LEU D 201 SHEET 3 AA8 6 ILE D 229 ALA D 232 1 O PHE D 231 N PHE D 172 SHEET 4 AA8 6 LEU D 254 ASP D 259 1 O VAL D 256 N ALA D 232 SHEET 5 AA8 6 ALA D 275 ALA D 278 1 O ILE D 277 N ASP D 259 SHEET 6 AA8 6 TYR D 310 VAL D 312 -1 O TYR D 310 N ALA D 278 SITE 1 AC1 11 ASN A 58 TYR A 60 PHE A 61 ASP A 134 SITE 2 AC1 11 ARG A 135 ALA A 182 ARG A 186 PHE A 208 SITE 3 AC1 11 ASN A 234 ASP A 259 GLN A 279 SITE 1 AC2 11 ASN B 58 TYR B 60 PHE B 61 ASP B 134 SITE 2 AC2 11 ARG B 135 ALA B 182 ARG B 186 PHE B 208 SITE 3 AC2 11 ASN B 234 ASP B 259 GLN B 279 SITE 1 AC3 12 ASN C 58 TYR C 60 PHE C 61 ASP C 134 SITE 2 AC3 12 ARG C 135 ALA C 182 ARG C 186 PHE C 208 SITE 3 AC3 12 ASN C 234 ASP C 259 GLN C 279 HOH C 501 SITE 1 AC4 11 ASN D 58 TYR D 60 PHE D 61 ASP D 134 SITE 2 AC4 11 ARG D 135 ALA D 182 ARG D 186 PHE D 208 SITE 3 AC4 11 ASN D 234 ASP D 259 GLN D 279 CRYST1 39.631 151.220 169.856 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005887 0.00000