data_7EAF # _entry.id 7EAF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EAF pdb_00007eaf 10.2210/pdb7eaf/pdb WWPDB D_1300021069 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7EAF _pdbx_database_status.recvd_initial_deposition_date 2021-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, L.' 1 ? 'Lilley, D.M.J.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 49 _citation.language ? _citation.page_first 5916 _citation.page_last 5924 _citation.title 'Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkab333 _citation.pdbx_database_id_PubMed 33978763 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Liao, X.' 2 ? primary 'Li, M.' 3 ? primary 'Wang, J.' 4 ? primary 'Peng, X.' 5 ? primary 'Wilson, T.J.' 6 ? primary 'Lilley, D.M.J.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7EAF _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.460 _cell.length_a_esd ? _cell.length_b 61.460 _cell.length_b_esd ? _cell.length_c 157.910 _cell.length_c_esd ? _cell.volume 596480.374 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (94-MER)' 30519.307 1 ? ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 6 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGCUUAUCAAGAGAGGGCGAGGGACUGGCCCGACGACCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGCUUAUCAAGAGAGGGCGAGGGACUGGCCCGACGACCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGU UGAAAGAUGAGCCG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 U n 1 6 A n 1 7 U n 1 8 C n 1 9 A n 1 10 A n 1 11 G n 1 12 A n 1 13 G n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 C n 1 19 G n 1 20 A n 1 21 G n 1 22 G n 1 23 G n 1 24 A n 1 25 C n 1 26 U n 1 27 G n 1 28 G n 1 29 C n 1 30 C n 1 31 C n 1 32 G n 1 33 A n 1 34 C n 1 35 G n 1 36 A n 1 37 C n 1 38 C n 1 39 C n 1 40 C n 1 41 C n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 C n 1 48 C n 1 49 A n 1 50 G n 1 51 A n 1 52 A n 1 53 A n 1 54 U n 1 55 G n 1 56 G n 1 57 U n 1 58 G n 1 59 C n 1 60 C n 1 61 A n 1 62 A n 1 63 U n 1 64 U n 1 65 C n 1 66 C n 1 67 U n 1 68 G n 1 69 C n 1 70 A n 1 71 G n 1 72 C n 1 73 G n 1 74 G n 1 75 A n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 U n 1 81 U n 1 82 G n 1 83 A n 1 84 A n 1 85 A n 1 86 G n 1 87 A n 1 88 U n 1 89 G n 1 90 A n 1 91 G n 1 92 C n 1 93 C n 1 94 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 94 _pdbx_entity_src_syn.organism_scientific 'Caldanaerobacter subterraneus subsp. tengcongensis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 119072 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7EAF _struct_ref.pdbx_db_accession 7EAF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7EAF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 94 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7EAF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 94 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 94 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EAF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40 MM NA-CACODYLATE (PH 7.0), 80 MM KCL, 40 MM BACL2, 12 MM SPERMINE-HCL, 12% (V/V) MPD.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-01-22 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9785 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 66.96 _reflns.entry_id 7EAF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.80 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7963 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.154 _reflns.pdbx_Rpim_I_all 0.056 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.99 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1123 _reflns_shell.percent_possible_all 99.6 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.656 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.771 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 75.22 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7EAF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.85 _refine.ls_d_res_low 29.22 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7539 _refine.ls_number_reflns_R_free 367 _refine.ls_number_reflns_R_work 7172 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.01 _refine.ls_percent_reflns_R_free 4.87 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2639 _refine.ls_R_factor_R_free 0.2976 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2621 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5FK3 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 45.4143 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4498 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 29.22 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 2065 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2026 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0042 ? 2325 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9653 ? 3627 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0438 ? 480 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0066 ? 97 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.9042 ? 1154 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.85 3.26 . . 106 2330 98.82 . . . 0.3673 . 0.3025 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.26 4.11 . . 121 2346 98.80 . . . 0.2822 . 0.2510 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.11 29.22 . . 140 2496 99.40 . . . 0.2912 . 0.2569 . . . . . . . . . . . # _struct.entry_id 7EAF _struct.title 'Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EAF _struct_keywords.text 'SAM; Riboswitch, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 15 O6 ? ? ? 1_555 E BA . BA ? ? A G 15 A BA 104 1_555 ? ? ? ? ? ? ? 3.358 ? ? metalc2 metalc ? ? A G 16 O6 ? ? ? 1_555 E BA . BA ? ? A G 16 A BA 104 1_555 ? ? ? ? ? ? ? 2.968 ? ? metalc3 metalc ? ? A G 22 O6 ? ? ? 1_555 F BA . BA ? ? A G 22 A BA 105 1_555 ? ? ? ? ? ? ? 2.719 ? ? metalc4 metalc ? ? A G 27 O6 ? ? ? 1_555 D BA . BA ? ? A G 27 A BA 103 1_555 ? ? ? ? ? ? ? 2.860 ? ? metalc5 metalc ? ? A G 42 O6 ? ? ? 1_555 I NA . NA ? ? A G 42 A NA 108 1_555 ? ? ? ? ? ? ? 3.113 ? ? metalc6 metalc ? ? A G 50 O6 ? ? ? 1_555 G BA . BA ? ? A G 50 A BA 106 1_555 ? ? ? ? ? ? ? 3.074 ? ? metalc7 metalc ? ? A A 52 OP1 ? ? ? 1_555 G BA . BA ? ? A A 52 A BA 106 1_555 ? ? ? ? ? ? ? 3.382 ? ? metalc8 metalc ? ? A G 74 O6 ? ? ? 1_555 H BA . BA ? ? A G 74 A BA 107 1_555 ? ? ? ? ? ? ? 3.234 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 93 N3 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 93 O2 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 93 N4 ? ? A G 1 A C 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 2 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 91 N1 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 91 N2 ? ? A C 3 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 4 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 89 O6 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 89 N1 ? ? A U 5 A G 89 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? A A 6 A U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 87 N1 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 87 N6 ? ? A U 7 A A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 86 N1 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 86 O6 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 86 N2 ? ? A C 8 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 11 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog22 hydrog ? ? A A 12 N3 ? ? ? 1_555 A G 43 N2 ? ? A A 12 A G 43 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 13 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 15 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 17 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 18 O2 ? ? ? 1_555 A C 37 N4 ? ? A C 18 A C 37 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 36 N7 ? ? A G 19 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A A 20 N6 ? ? ? 1_555 A G 35 N3 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A A 20 N7 ? ? ? 1_555 A G 35 N2 ? ? A A 20 A G 35 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 62 N1 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 62 N6 ? ? A G 23 A A 62 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog50 hydrog ? ? A A 24 N6 ? ? ? 1_555 A A 85 N3 ? ? A A 24 A A 85 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog51 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 25 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 26 N3 ? ? ? 1_555 A U 67 O2 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog55 hydrog ? ? A U 26 O4 ? ? ? 1_555 A U 67 N3 ? ? A U 26 A U 67 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog56 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 27 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 28 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 60 N3 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 60 O2 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 60 N4 ? ? A G 42 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 43 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 43 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 43 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 43 A C 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 44 A G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 47 N3 ? ? ? 1_555 A G 56 N1 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 47 N4 ? ? ? 1_555 A G 56 O6 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 56 N2 ? ? A C 47 A G 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 48 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 54 N3 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 54 O4 ? ? A A 49 A U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 50 N2 ? ? ? 1_555 A A 53 N7 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog80 hydrog ? ? A G 50 N3 ? ? ? 1_555 A A 53 N6 ? ? A G 50 A A 53 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog81 hydrog ? ? A U 64 N3 ? ? ? 1_555 A A 85 N1 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 64 O4 ? ? ? 1_555 A A 85 N6 ? ? A U 64 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 69 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 69 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 69 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 69 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 70 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A A 70 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 70 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 71 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? A G 71 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 71 A U 80 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog90 hydrog ? ? A C 72 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 72 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 72 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 72 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 73 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 74 N2 ? ? ? 1_555 A A 77 N7 ? ? A G 74 A A 77 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7EAF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.016271 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006333 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BA ? ? 46.69444 9.00985 ? ? 2.07616 47.04031 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 U 4 4 4 U U A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 A 12 12 12 A A A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 A 20 20 20 A A A . n A 1 21 G 21 21 21 G G A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 G 28 28 28 G G A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 C 31 31 31 C C A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n A 1 40 C 40 40 40 C C A . n A 1 41 C 41 41 41 C C A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 C 44 44 44 C C A . n A 1 45 A 45 45 45 A A A . n A 1 46 A 46 46 46 A A A . n A 1 47 C 47 47 47 C C A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 U 54 54 54 U U A . n A 1 55 G 55 55 55 G G A . n A 1 56 G 56 56 56 G G A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 A 62 62 62 A A A . n A 1 63 U 63 63 63 U U A . n A 1 64 U 64 64 64 U U A . n A 1 65 C 65 65 65 C C A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 C 69 69 69 C C A . n A 1 70 A 70 70 70 A A A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 A 77 77 77 A A A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 U 80 80 80 U U A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 A 84 84 84 A A A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 U 88 88 88 U U A . n A 1 89 G 89 89 89 G G A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 C 92 92 92 C C A . n A 1 93 C 93 93 93 C C A . n A 1 94 G 94 94 94 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 101 1095 SAM SAM A . C 3 BA 1 102 1 BA BA A . D 3 BA 1 103 2 BA BA A . E 3 BA 1 104 3 BA BA A . F 3 BA 1 105 4 BA BA A . G 3 BA 1 106 5 BA BA A . H 3 BA 1 107 6 BA BA A . I 4 NA 1 108 1 NA NA A . J 5 HOH 1 201 4 HOH HOH A . J 5 HOH 2 202 5 HOH HOH A . J 5 HOH 3 203 3 HOH HOH A . J 5 HOH 4 204 1 HOH HOH A . J 5 HOH 5 205 2 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 130 ? 1 MORE -10 ? 1 'SSA (A^2)' 15030 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id BA _pdbx_struct_special_symmetry.auth_seq_id 102 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id BA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 15 ? A G 15 ? 1_555 BA ? E BA . ? A BA 104 ? 1_555 O6 ? A G 16 ? A G 16 ? 1_555 67.1 ? 2 O6 ? A G 50 ? A G 50 ? 1_555 BA ? G BA . ? A BA 106 ? 1_555 OP1 ? A A 52 ? A A 52 ? 1_555 59.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-06-02 2 'Structure model' 1 1 2021-06-23 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+3/4 3 y+1/2,-x+1/2,z+1/4 4 x+1/2,-y+1/2,-z+1/4 5 -x+1/2,y+1/2,-z+3/4 6 -x,-y,z+1/2 7 y,x,-z 8 -y,-x,-z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -9.32676536 _pdbx_refine_tls.origin_y -9.95773684407 _pdbx_refine_tls.origin_z -23.0866878138 _pdbx_refine_tls.T[1][1] 0.725310504013 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.140789299773 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0960715586856 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.592518506556 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0863391107419 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.513179685662 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.14406158049 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 1.49978855029 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.152405604736 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.21493705298 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.195771229289 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.25907628295 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.093813728766 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.147748414929 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.226609401949 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0766723219089 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.260941565748 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.154801237559 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.135245084704 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.00190368786849 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.146956928436 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id J _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id D _pdbx_refine_tls_group.end_auth_seq_id 5 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.1_4122 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7EAF _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O2'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 G _pdbx_validate_close_contact.auth_seq_id_1 13 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 G _pdbx_validate_close_contact.auth_seq_id_2 15 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.482 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.125 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 NA NA NA N N 115 SAM N N N N 116 SAM CA C N S 117 SAM C C N N 118 SAM O O N N 119 SAM OXT O N N 120 SAM CB C N N 121 SAM CG C N N 122 SAM SD S N S 123 SAM CE C N N 124 SAM "C5'" C N N 125 SAM "C4'" C N S 126 SAM "O4'" O N N 127 SAM "C3'" C N S 128 SAM "O3'" O N N 129 SAM "C2'" C N R 130 SAM "O2'" O N N 131 SAM "C1'" C N R 132 SAM N9 N Y N 133 SAM C8 C Y N 134 SAM N7 N Y N 135 SAM C5 C Y N 136 SAM C6 C Y N 137 SAM N6 N N N 138 SAM N1 N Y N 139 SAM C2 C Y N 140 SAM N3 N Y N 141 SAM C4 C Y N 142 SAM HN1 H N N 143 SAM HN2 H N N 144 SAM HA H N N 145 SAM HB1 H N N 146 SAM HB2 H N N 147 SAM HG1 H N N 148 SAM HG2 H N N 149 SAM HE1 H N N 150 SAM HE2 H N N 151 SAM HE3 H N N 152 SAM "H5'1" H N N 153 SAM "H5'2" H N N 154 SAM "H4'" H N N 155 SAM "H3'" H N N 156 SAM "HO3'" H N N 157 SAM "H2'" H N N 158 SAM "HO2'" H N N 159 SAM "H1'" H N N 160 SAM H8 H N N 161 SAM HN61 H N N 162 SAM HN62 H N N 163 SAM H2 H N N 164 U OP3 O N N 165 U P P N N 166 U OP1 O N N 167 U OP2 O N N 168 U "O5'" O N N 169 U "C5'" C N N 170 U "C4'" C N R 171 U "O4'" O N N 172 U "C3'" C N S 173 U "O3'" O N N 174 U "C2'" C N R 175 U "O2'" O N N 176 U "C1'" C N R 177 U N1 N N N 178 U C2 C N N 179 U O2 O N N 180 U N3 N N N 181 U C4 C N N 182 U O4 O N N 183 U C5 C N N 184 U C6 C N N 185 U HOP3 H N N 186 U HOP2 H N N 187 U "H5'" H N N 188 U "H5''" H N N 189 U "H4'" H N N 190 U "H3'" H N N 191 U "HO3'" H N N 192 U "H2'" H N N 193 U "HO2'" H N N 194 U "H1'" H N N 195 U H3 H N N 196 U H5 H N N 197 U H6 H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SAM N CA sing N N 118 SAM N HN1 sing N N 119 SAM N HN2 sing N N 120 SAM CA C sing N N 121 SAM CA CB sing N N 122 SAM CA HA sing N N 123 SAM C O doub N N 124 SAM C OXT sing N N 125 SAM CB CG sing N N 126 SAM CB HB1 sing N N 127 SAM CB HB2 sing N N 128 SAM CG SD sing N N 129 SAM CG HG1 sing N N 130 SAM CG HG2 sing N N 131 SAM SD CE sing N N 132 SAM SD "C5'" sing N N 133 SAM CE HE1 sing N N 134 SAM CE HE2 sing N N 135 SAM CE HE3 sing N N 136 SAM "C5'" "C4'" sing N N 137 SAM "C5'" "H5'1" sing N N 138 SAM "C5'" "H5'2" sing N N 139 SAM "C4'" "O4'" sing N N 140 SAM "C4'" "C3'" sing N N 141 SAM "C4'" "H4'" sing N N 142 SAM "O4'" "C1'" sing N N 143 SAM "C3'" "O3'" sing N N 144 SAM "C3'" "C2'" sing N N 145 SAM "C3'" "H3'" sing N N 146 SAM "O3'" "HO3'" sing N N 147 SAM "C2'" "O2'" sing N N 148 SAM "C2'" "C1'" sing N N 149 SAM "C2'" "H2'" sing N N 150 SAM "O2'" "HO2'" sing N N 151 SAM "C1'" N9 sing N N 152 SAM "C1'" "H1'" sing N N 153 SAM N9 C8 sing Y N 154 SAM N9 C4 sing Y N 155 SAM C8 N7 doub Y N 156 SAM C8 H8 sing N N 157 SAM N7 C5 sing Y N 158 SAM C5 C6 sing Y N 159 SAM C5 C4 doub Y N 160 SAM C6 N6 sing N N 161 SAM C6 N1 doub Y N 162 SAM N6 HN61 sing N N 163 SAM N6 HN62 sing N N 164 SAM N1 C2 sing Y N 165 SAM C2 N3 doub Y N 166 SAM C2 H2 sing N N 167 SAM N3 C4 sing Y N 168 U OP3 P sing N N 169 U OP3 HOP3 sing N N 170 U P OP1 doub N N 171 U P OP2 sing N N 172 U P "O5'" sing N N 173 U OP2 HOP2 sing N N 174 U "O5'" "C5'" sing N N 175 U "C5'" "C4'" sing N N 176 U "C5'" "H5'" sing N N 177 U "C5'" "H5''" sing N N 178 U "C4'" "O4'" sing N N 179 U "C4'" "C3'" sing N N 180 U "C4'" "H4'" sing N N 181 U "O4'" "C1'" sing N N 182 U "C3'" "O3'" sing N N 183 U "C3'" "C2'" sing N N 184 U "C3'" "H3'" sing N N 185 U "O3'" "HO3'" sing N N 186 U "C2'" "O2'" sing N N 187 U "C2'" "C1'" sing N N 188 U "C2'" "H2'" sing N N 189 U "O2'" "HO2'" sing N N 190 U "C1'" N1 sing N N 191 U "C1'" "H1'" sing N N 192 U N1 C2 sing N N 193 U N1 C6 sing N N 194 U C2 O2 doub N N 195 U C2 N3 sing N N 196 U N3 C4 sing N N 197 U N3 H3 sing N N 198 U C4 O4 doub N N 199 U C4 C5 sing N N 200 U C5 C6 doub N N 201 U C5 H5 sing N N 202 U C6 H6 sing N N 203 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7EAF 'double helix' 7EAF 'a-form double helix' 7EAF tetraloop 7EAF 'bulge loop' 7EAF 'mismatched base pair' 7EAF 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 93 1_555 -0.180 -0.107 -0.501 -3.149 -5.715 0.059 1 A_G1:C93_A A 1 ? A 93 ? 19 1 1 A G 2 1_555 A C 92 1_555 -0.236 -0.177 -0.859 -10.275 -4.353 2.336 2 A_G2:C92_A A 2 ? A 92 ? 19 1 1 A C 3 1_555 A G 91 1_555 0.155 -0.184 -0.634 -7.410 -3.858 2.287 3 A_C3:G91_A A 3 ? A 91 ? 19 1 1 A U 4 1_555 A A 90 1_555 0.004 -0.070 0.030 -11.158 -4.554 3.599 4 A_U4:A90_A A 4 ? A 90 ? 20 1 1 A U 5 1_555 A G 89 1_555 1.681 -0.325 0.248 -5.363 -0.350 6.146 5 A_U5:G89_A A 5 ? A 89 ? 28 1 1 A A 6 1_555 A U 88 1_555 -0.040 -0.083 -0.004 6.378 -4.997 3.031 6 A_A6:U88_A A 6 ? A 88 ? 20 1 1 A U 7 1_555 A A 87 1_555 -0.089 -0.087 0.323 2.442 0.419 -0.310 7 A_U7:A87_A A 7 ? A 87 ? 20 1 1 A C 8 1_555 A G 86 1_555 0.105 -0.068 0.247 3.854 -2.291 -1.330 8 A_C8:G86_A A 8 ? A 86 ? 19 1 1 A U 64 1_555 A A 85 1_555 -0.148 -0.032 0.360 -0.964 -1.783 -0.763 9 A_U64:A85_A A 64 ? A 85 ? 20 1 1 A G 35 1_555 A A 20 1_555 6.434 -4.199 0.564 14.118 23.845 10.791 10 A_G35:A20_A A 35 ? A 20 ? 11 9 1 A A 36 1_555 A G 19 1_555 -7.928 -5.498 0.174 -12.866 -2.874 -42.336 11 A_A36:G19_A A 36 ? A 19 ? ? ? 1 A C 37 1_555 A C 18 1_555 -4.109 -1.809 -0.055 2.862 4.760 -16.121 12 A_C37:C18_A A 37 ? A 18 ? ? 1 1 A C 38 1_555 A G 17 1_555 0.146 -0.068 -0.288 11.087 -2.117 1.526 13 A_C38:G17_A A 38 ? A 17 ? 19 1 1 A C 39 1_555 A G 16 1_555 0.028 -0.163 -0.133 10.174 7.899 -2.290 14 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A C 40 1_555 A G 15 1_555 0.176 -0.249 -0.606 7.760 1.031 -0.969 15 A_C40:G15_A A 40 ? A 15 ? 19 1 1 A C 41 1_555 A G 13 1_555 0.224 -0.136 -0.015 5.645 -9.554 3.649 16 A_C41:G13_A A 41 ? A 13 ? 19 1 1 A G 42 1_555 A C 60 1_555 -0.170 -0.136 0.133 1.902 1.529 -1.408 17 A_G42:C60_A A 42 ? A 60 ? 19 1 1 A G 43 1_555 A C 59 1_555 -0.269 -0.151 -0.266 -6.787 -11.698 3.335 18 A_G43:C59_A A 43 ? A 59 ? 19 1 1 A C 44 1_555 A G 58 1_555 0.185 -0.057 0.039 -12.190 -12.179 0.269 19 A_C44:G58_A A 44 ? A 58 ? 19 1 1 A G 21 1_555 A C 31 1_555 -0.175 -0.127 0.273 1.503 -6.901 -0.572 20 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A G 22 1_555 A C 30 1_555 -0.131 0.006 0.057 -7.087 -2.788 -0.981 21 A_G22:C30_A A 22 ? A 30 ? 19 1 1 A G 23 1_555 A C 29 1_555 -0.140 -0.078 0.084 3.217 0.213 -0.526 22 A_G23:C29_A A 23 ? A 29 ? 19 1 1 A C 65 1_555 A G 28 1_555 0.225 -0.149 -0.118 9.915 -13.636 2.357 23 A_C65:G28_A A 65 ? A 28 ? 19 1 1 A C 66 1_555 A G 27 1_555 0.168 -0.232 0.311 4.814 -11.057 0.192 24 A_C66:G27_A A 66 ? A 27 ? 19 1 1 A U 67 1_555 A U 26 1_555 2.218 -1.709 0.480 3.535 -14.932 5.908 25 A_U67:U26_A A 67 ? A 26 ? 16 1 1 A G 68 1_555 A C 25 1_555 -0.187 -0.225 0.397 0.075 -17.344 0.418 26 A_G68:C25_A A 68 ? A 25 ? 19 1 1 A C 47 1_555 A G 56 1_555 0.086 -0.085 0.140 4.742 0.073 -3.448 27 A_C47:G56_A A 47 ? A 56 ? 19 1 1 A C 48 1_555 A G 55 1_555 0.196 -0.175 -0.151 5.510 -3.316 -1.219 28 A_C48:G55_A A 48 ? A 55 ? 19 1 1 A A 49 1_555 A U 54 1_555 0.150 -0.110 0.022 4.435 10.311 0.515 29 A_A49:U54_A A 49 ? A 54 ? 20 1 1 A G 50 1_555 A A 53 1_555 6.609 -4.827 0.379 16.750 5.392 -12.395 30 A_G50:A53_A A 50 ? A 53 ? 11 10 1 A C 69 1_555 A G 82 1_555 0.144 -0.091 0.290 -2.747 -5.799 1.232 31 A_C69:G82_A A 69 ? A 82 ? 19 1 1 A A 70 1_555 A U 81 1_555 0.059 -0.116 0.171 1.463 -9.706 -0.685 32 A_A70:U81_A A 70 ? A 81 ? 20 1 1 A G 71 1_555 A U 80 1_555 -1.538 -0.628 -0.159 -5.464 -2.676 -5.831 33 A_G71:U80_A A 71 ? A 80 ? 28 1 1 A C 72 1_555 A G 79 1_555 0.208 -0.122 0.101 -2.047 -5.132 1.817 34 A_C72:G79_A A 72 ? A 79 ? 19 1 1 A G 73 1_555 A C 78 1_555 -0.142 -0.146 -0.344 3.507 3.957 1.940 35 A_G73:C78_A A 73 ? A 78 ? 19 1 1 A G 74 1_555 A A 77 1_555 7.515 -6.125 1.259 10.465 -15.270 -27.207 36 A_G74:A77_A A 74 ? A 77 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 93 1_555 A G 2 1_555 A C 92 1_555 -0.269 -1.298 3.518 -3.038 3.383 34.740 -2.696 -0.037 3.392 5.636 5.061 35.027 1 AA_G1G2:C92C93_AA A 1 ? A 93 ? A 2 ? A 92 ? 1 A G 2 1_555 A C 92 1_555 A C 3 1_555 A G 91 1_555 -0.764 -1.814 3.080 -4.762 8.000 33.811 -4.091 0.627 2.674 13.441 8.001 35.033 2 AA_G2C3:G91C92_AA A 2 ? A 92 ? A 3 ? A 91 ? 1 A C 3 1_555 A G 91 1_555 A U 4 1_555 A A 90 1_555 -0.068 -1.426 3.355 -4.080 9.592 29.822 -4.339 -0.606 2.761 17.962 7.639 31.552 3 AA_C3U4:A90G91_AA A 3 ? A 91 ? A 4 ? A 90 ? 1 A U 4 1_555 A A 90 1_555 A U 5 1_555 A G 89 1_555 0.272 -0.762 3.199 -1.145 8.070 37.546 -2.119 -0.549 2.969 12.359 1.754 38.389 4 AA_U4U5:G89A90_AA A 4 ? A 90 ? A 5 ? A 89 ? 1 A U 5 1_555 A G 89 1_555 A A 6 1_555 A U 88 1_555 -0.591 -1.208 2.780 2.176 11.729 26.706 -4.358 1.535 2.027 23.932 -4.440 29.205 5 AA_U5A6:U88G89_AA A 5 ? A 89 ? A 6 ? A 88 ? 1 A A 6 1_555 A U 88 1_555 A U 7 1_555 A A 87 1_555 0.114 -1.515 3.476 -3.096 10.226 32.095 -4.252 -0.694 2.851 17.887 5.416 33.782 6 AA_A6U7:A87U88_AA A 6 ? A 88 ? A 7 ? A 87 ? 1 A U 7 1_555 A A 87 1_555 A C 8 1_555 A G 86 1_555 0.506 -1.633 3.212 5.027 3.166 30.726 -3.610 -0.017 3.074 5.905 -9.378 31.281 7 AA_U7C8:G86A87_AA A 7 ? A 87 ? A 8 ? A 86 ? 1 A C 8 1_555 A G 86 1_555 A U 64 1_555 A A 85 1_555 -1.068 -2.098 3.153 -0.691 6.047 36.274 -4.081 1.608 2.798 9.630 1.100 36.764 8 AA_C8U64:A85G86_AA A 8 ? A 86 ? A 64 ? A 85 ? 1 A G 35 1_555 A A 20 1_555 A A 36 1_555 A G 19 1_555 -2.927 -0.824 3.894 -8.966 -14.674 -27.509 4.087 -6.847 2.161 27.694 -16.920 -32.353 9 AA_G35A36:G19A20_AA A 35 ? A 20 ? A 36 ? A 19 ? 1 A A 36 1_555 A G 19 1_555 A C 37 1_555 A C 18 1_555 0.268 -0.792 3.175 -13.404 4.625 62.257 -0.944 -0.814 3.008 4.413 12.788 63.693 10 AA_A36C37:C18G19_AA A 36 ? A 19 ? A 37 ? A 18 ? 1 A C 37 1_555 A C 18 1_555 A C 38 1_555 A G 17 1_555 1.012 -0.947 3.175 -1.997 9.220 50.749 -1.679 -1.291 2.934 10.651 2.307 51.561 11 AA_C37C38:G17C18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A C 38 1_555 A G 17 1_555 A C 39 1_555 A G 16 1_555 -0.920 -2.105 3.150 -4.945 12.633 32.857 -5.067 0.879 2.320 21.242 8.315 35.476 12 AA_C38C39:G16G17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 39 1_555 A G 16 1_555 A C 40 1_555 A G 15 1_555 -0.062 -2.023 3.275 1.985 3.964 32.158 -4.290 0.447 3.002 7.113 -3.562 32.454 13 AA_C39C40:G15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A C 40 1_555 A G 15 1_555 A C 41 1_555 A G 13 1_555 1.498 -1.748 3.116 0.059 7.236 39.756 -3.271 -2.164 2.771 10.534 -0.086 40.383 14 AA_C40C41:G13G15_AA A 40 ? A 15 ? A 41 ? A 13 ? 1 A C 41 1_555 A G 13 1_555 A G 42 1_555 A C 60 1_555 3.055 -1.562 3.301 -2.250 0.023 49.816 -1.854 -3.786 3.169 0.027 2.670 49.864 15 AA_C41G42:C60G13_AA A 41 ? A 13 ? A 42 ? A 60 ? 1 A G 42 1_555 A C 60 1_555 A G 43 1_555 A C 59 1_555 0.373 -2.036 3.456 2.288 7.755 33.436 -4.648 -0.277 2.943 13.239 -3.906 34.372 16 AA_G42G43:C59C60_AA A 42 ? A 60 ? A 43 ? A 59 ? 1 A G 43 1_555 A C 59 1_555 A C 44 1_555 A G 58 1_555 -0.763 -1.250 3.274 -1.287 -1.057 41.639 -1.645 0.935 3.325 -1.486 1.809 41.670 17 AA_G43C44:G58C59_AA A 43 ? A 59 ? A 44 ? A 58 ? 1 A G 21 1_555 A C 31 1_555 A G 22 1_555 A C 30 1_555 0.841 -2.469 3.422 7.603 4.541 28.739 -5.717 -0.026 3.119 8.887 -14.877 30.045 18 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A G 22 1_555 A C 30 1_555 A G 23 1_555 A C 29 1_555 -0.068 -1.657 3.012 0.786 1.208 25.734 -4.021 0.353 2.929 2.709 -1.764 25.774 19 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 23 1_555 A C 29 1_555 A C 65 1_555 A G 28 1_555 -2.710 -0.047 3.140 -2.311 -1.112 55.723 0.012 2.767 3.242 -1.189 2.471 55.777 20 AA_G23C65:G28C29_AA A 23 ? A 29 ? A 65 ? A 28 ? 1 A C 65 1_555 A G 28 1_555 A C 66 1_555 A G 27 1_555 -0.866 -2.098 3.183 -7.213 11.484 28.792 -5.705 0.406 2.342 21.644 13.595 31.765 21 AA_C65C66:G27G28_AA A 65 ? A 28 ? A 66 ? A 27 ? 1 A C 66 1_555 A G 27 1_555 A U 67 1_555 A U 26 1_555 0.430 -0.807 3.214 0.514 6.883 44.626 -1.648 -0.516 3.068 9.000 -0.673 45.130 22 AA_C66U67:U26G27_AA A 66 ? A 27 ? A 67 ? A 26 ? 1 A U 67 1_555 A U 26 1_555 A G 68 1_555 A C 25 1_555 -0.151 -0.855 3.134 9.400 10.428 32.387 -2.835 1.531 2.603 17.694 -15.951 35.224 23 AA_U67G68:C25U26_AA A 67 ? A 26 ? A 68 ? A 25 ? 1 A C 47 1_555 A G 56 1_555 A C 48 1_555 A G 55 1_555 0.305 -2.211 3.243 -0.256 2.469 33.276 -4.248 -0.572 3.074 4.305 0.446 33.366 24 AA_C47C48:G55G56_AA A 47 ? A 56 ? A 48 ? A 55 ? 1 A C 48 1_555 A G 55 1_555 A A 49 1_555 A U 54 1_555 0.239 -2.152 3.360 -0.651 1.561 30.497 -4.398 -0.584 3.243 2.965 1.237 30.543 25 AA_C48A49:U54G55_AA A 48 ? A 55 ? A 49 ? A 54 ? 1 A A 49 1_555 A U 54 1_555 A G 50 1_555 A A 53 1_555 -1.140 -1.217 3.058 -2.792 5.945 51.454 -1.761 1.130 2.964 6.815 3.201 51.843 26 AA_A49G50:A53U54_AA A 49 ? A 54 ? A 50 ? A 53 ? 1 A C 69 1_555 A G 82 1_555 A A 70 1_555 A U 81 1_555 -0.295 -1.789 2.816 -1.539 11.270 27.453 -5.295 0.330 1.958 22.559 3.080 29.674 27 AA_C69A70:U81G82_AA A 69 ? A 82 ? A 70 ? A 81 ? 1 A A 70 1_555 A U 81 1_555 A G 71 1_555 A U 80 1_555 -0.775 -1.803 3.223 -5.369 5.569 28.833 -4.611 0.436 2.925 10.937 10.545 29.831 28 AA_A70G71:U80U81_AA A 70 ? A 81 ? A 71 ? A 80 ? 1 A G 71 1_555 A U 80 1_555 A C 72 1_555 A G 79 1_555 0.281 -1.435 3.161 -3.694 5.846 37.727 -2.866 -0.859 2.876 8.949 5.655 38.333 29 AA_G71C72:G79U80_AA A 71 ? A 80 ? A 72 ? A 79 ? 1 A C 72 1_555 A G 79 1_555 A G 73 1_555 A C 78 1_555 -0.337 -1.656 3.172 2.787 7.693 27.375 -4.929 1.253 2.574 15.813 -5.728 28.549 30 AA_C72G73:C78G79_AA A 72 ? A 79 ? A 73 ? A 78 ? 1 A G 73 1_555 A C 78 1_555 A G 74 1_555 A A 77 1_555 -2.408 -0.951 3.111 -0.648 17.100 60.310 -1.635 2.295 2.801 16.662 0.632 62.470 31 AA_G73G74:A77C78_AA A 73 ? A 78 ? A 74 ? A 77 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education (MoE, China)' China ? 1 'Cancer Research UK' 'United Kingdom' A18604 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'BARIUM ION' BA 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5FK3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 43 21 2' _space_group.name_Hall 'P 4nw 2abw' _space_group.IT_number 96 _space_group.crystal_system tetragonal _space_group.id 1 #