HEADER HYDROLASE 08-MAR-21 7EAP TITLE CRYSTAL STRUCTURE OF IPEA-XXXG COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FN3_LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GH3 ISOPRIMEVEROSE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE (STRAIN ATCC 42149 / RIB SOURCE 3 40); SOURCE 4 ORGANISM_COMMON: YELLOW KOJI MOLD; SOURCE 5 ORGANISM_TAXID: 510516; SOURCE 6 STRAIN: ATCC 42149 / RIB 40; SOURCE 7 GENE: AO090701000274; SOURCE 8 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: X-33 KEYWDS GLYCOSIDE HYDROLASE FAMILY 3, ISOPRIMEVEROSE-PRODUCING KEYWDS 2 OLIGOXYLOGLUCAN HYDROLASE, XYLOGLUCAN OLIGOSACCHARIDES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MATSUZAWA,M.WATANABE,Y.NAKAMICHI,H.AKITA,K.YAOI REVDAT 3 29-NOV-23 7EAP 1 REMARK REVDAT 2 28-SEP-22 7EAP 1 JRNL REVDAT 1 16-MAR-22 7EAP 0 JRNL AUTH T.MATSUZAWA,M.WATANABE,Y.NAKAMICHI,H.AKITA,K.YAOI JRNL TITL STRUCTURAL BASIS FOR THE CATALYTIC MECHANISM OF THE JRNL TITL 2 GLYCOSIDE HYDROLASE FAMILY 3 ISOPRIMEVEROSE-PRODUCING JRNL TITL 3 OLIGOXYLOGLUCAN HYDROLASE FROM ASPERGILLUS ORYZAE. JRNL REF FEBS LETT. V. 596 1944 2022 JRNL REFN ISSN 0014-5793 JRNL PMID 35717558 JRNL DOI 10.1002/1873-3468.14427 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 172870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 642 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5835 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 206 REMARK 3 SOLVENT ATOMS : 603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6199 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5593 ; 0.006 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8455 ; 2.110 ; 1.687 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13002 ; 1.664 ; 1.613 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 6.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;35.853 ;23.401 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;12.183 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6878 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1255 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11788 ; 4.600 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 47.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YOT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.00100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.00200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.00200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.00100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -63.00100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 ASP A 24 REMARK 465 VAL A 780 REMARK 465 ASP A 781 REMARK 465 HIS A 782 REMARK 465 HIS A 783 REMARK 465 HIS A 784 REMARK 465 HIS A 785 REMARK 465 HIS A 786 REMARK 465 HIS A 787 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1274 O HOH A 1492 2.15 REMARK 500 O4 BGC B 3 O5 BGC B 4 2.18 REMARK 500 NZ LYS A 105 O HOH A 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 38 CD GLU A 38 OE1 0.091 REMARK 500 GLU A 38 CD GLU A 38 OE2 0.088 REMARK 500 ARG A 158 CZ ARG A 158 NH2 0.113 REMARK 500 ASN A 383 CG ASN A 383 OD1 0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 MET A 53 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 MET A 53 CG - SD - CE ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 173 CG - SD - CE ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 254 CG - CD - NE ANGL. DEV. = -20.0 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 408 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 453 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 453 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 THR A 673 CA - CB - OG1 ANGL. DEV. = -16.1 DEGREES REMARK 500 THR A 676 CA - CB - CG2 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 771 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 84 59.24 -157.14 REMARK 500 SER A 126 -0.01 -140.75 REMARK 500 TYR A 295 -152.12 -114.07 REMARK 500 SER A 508 -162.34 -123.04 REMARK 500 SER A 621 -13.41 101.40 REMARK 500 ARG A 623 -53.29 76.38 REMARK 500 HIS A 641 -47.05 -131.21 REMARK 500 THR A 693 -24.93 -140.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 245 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1502 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A1503 DISTANCE = 6.75 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CA A 801 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 706 OD1 REMARK 620 2 VAL A 708 O 91.4 REMARK 620 3 HOH A 927 O 85.4 92.0 REMARK 620 4 HOH A 958 O 82.4 87.5 167.8 REMARK 620 5 HOH A1077 O 176.0 89.3 98.5 93.7 REMARK 620 6 HOH A1145 O 88.2 172.6 95.4 85.1 90.6 REMARK 620 N 1 2 3 4 5 DBREF 7EAP A 23 779 UNP Q2U8V9 Q2U8V9_ASPOR 23 779 SEQADV 7EAP ALA A 524 UNP Q2U8V9 GLU 524 CONFLICT SEQADV 7EAP VAL A 780 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP ASP A 781 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 782 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 783 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 784 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 785 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 786 UNP Q2U8V9 EXPRESSION TAG SEQADV 7EAP HIS A 787 UNP Q2U8V9 EXPRESSION TAG SEQRES 1 A 765 GLN ASP GLU LYS PRO ARG TYR LYS ASP PRO SER VAL PRO SEQRES 2 A 765 VAL GLU GLU ARG VAL THR ASP LEU LEU GLY ARG MET THR SEQRES 3 A 765 LEU GLU GLU LYS MET SER GLN LEU ILE GLN GLY ASP ILE SEQRES 4 A 765 THR ASN TRP MET ASN GLU THR THR GLY GLU PHE ASN LEU SEQRES 5 A 765 THR GLY LEU GLU TRP SER THR LYS MET ARG GLY GLY MET SEQRES 6 A 765 PHE TYR VAL GLY TYR PRO VAL PRO TRP ASP TYR ILE ALA SEQRES 7 A 765 ASP ASN VAL LYS LYS ALA GLN ASP TYR ILE LEU GLN ASN SEQRES 8 A 765 THR THR LEU GLY ILE PRO ALA ILE VAL GLN THR GLU SER SEQRES 9 A 765 LEU HIS GLY PHE LEU ILE GLY ASN ALA THR ILE TYR ASN SEQRES 10 A 765 SER PRO ILE GLY PHE ALA CYS SER PHE ASN PRO GLU LEU SEQRES 11 A 765 ILE GLU LYS MET ALA ARG LEU ILE GLY GLN GLU ALA SER SEQRES 12 A 765 ALA LEU GLY VAL ASN HIS VAL MET GLY PRO VAL VAL ASP SEQRES 13 A 765 LEU ALA ARG GLU LEU ARG PHE GLY ARG VAL GLU GLU THR SEQRES 14 A 765 TYR GLY GLU ASP PRO PHE LEU ALA GLY GLU ILE GLY TYR SEQRES 15 A 765 HIS TYR THR LYS GLY ILE GLN SER HIS ASN ILE SER ALA SEQRES 16 A 765 ASN VAL LYS HIS PHE VAL GLY PHE SER GLN PRO GLU GLN SEQRES 17 A 765 GLY LEU ASN THR ALA PRO VAL HIS GLY GLY GLU ARG TYR SEQRES 18 A 765 LEU ARG THR THR TRP LEU PRO SER PHE LYS ARG ALA ILE SEQRES 19 A 765 MET ASP ALA GLY ALA TRP SER ILE MET SER ALA TYR HIS SEQRES 20 A 765 SER TYR ASP GLY ILE PRO ALA VAL ALA ASP TYR HIS THR SEQRES 21 A 765 LEU THR GLU ILE LEU ARG GLU GLU TRP GLY TYR LYS TYR SEQRES 22 A 765 TRP VAL THR SER ASP ALA GLY ALA SER ASP ARG VAL CYS SEQRES 23 A 765 THR ALA PHE LYS LEU CYS ARG ALA ASP PRO ILE ASP LYS SEQRES 24 A 765 GLU ALA VAL THR LEU ALA ILE LEU PRO ALA GLY ASN ASP SEQRES 25 A 765 VAL GLU MET GLY GLY GLY SER TYR ASN PHE GLU THR ILE SEQRES 26 A 765 ILE ASP LEU VAL ASN ALA GLY LYS LEU ASP ILE GLU ILE SEQRES 27 A 765 VAL ASN THR ALA VAL SER ARG VAL LEU ARG ALA LYS PHE SEQRES 28 A 765 GLU MET GLY LEU PHE GLU ASN PRO TYR ASN ALA ALA PRO SEQRES 29 A 765 ALA SER GLU TRP ASN LYS LEU ILE HIS THR GLN GLU ALA SEQRES 30 A 765 VAL ASP LEU ALA ARG GLU LEU ASP ARG GLU SER ILE VAL SEQRES 31 A 765 LEU LEU GLU ASN HIS ASP ASN ALA LEU PRO LEU LYS LYS SEQRES 32 A 765 SER GLY SER ILE ALA VAL ILE GLY PRO MET ALA HIS GLY SEQRES 33 A 765 PHE MET ASN TYR GLY ASP TYR VAL VAL TYR GLU SER GLN SEQRES 34 A 765 TYR ARG GLY VAL THR PRO LEU ASP GLY ILE LYS ALA ALA SEQRES 35 A 765 VAL GLY ASP LYS ALA THR ILE ASN TYR ALA GLN GLY CYS SEQRES 36 A 765 GLU ARG TRP SER ASN ASP GLN SER GLY PHE ALA GLU ALA SEQRES 37 A 765 VAL GLU ALA ALA LYS LYS SER ASP VAL ALA VAL VAL VAL SEQRES 38 A 765 VAL GLY THR TRP SER ARG ASP GLN LYS GLU LEU TRP ALA SEQRES 39 A 765 GLY LEU ASN ALA THR THR GLY ALA HIS VAL ASP VAL ASN SEQRES 40 A 765 SER LEU SER LEU VAL GLY ALA GLN ALA PRO LEU ILE LYS SEQRES 41 A 765 ALA ILE ILE ASP THR GLY VAL PRO THR VAL VAL VAL LEU SEQRES 42 A 765 SER SER GLY LYS PRO ILE THR GLU PRO TRP LEU SER ASN SEQRES 43 A 765 ASN THR ALA ALA LEU VAL GLN GLN PHE TYR PRO SER GLU SEQRES 44 A 765 GLN GLY GLY ASN ALA LEU ALA ASP VAL LEU PHE GLY ASP SEQRES 45 A 765 TYR ASN PRO SER GLY LYS LEU SER VAL SER PHE PRO HIS SEQRES 46 A 765 SER VAL GLY ASP LEU PRO ILE TYR TYR ASP TYR LEU ASN SEQRES 47 A 765 SER ALA ARG GLU ILE GLY ASP ALA GLY TYR ILE TYR SER SEQRES 48 A 765 ASN GLY THR LEU GLU PHE GLY HIS GLN TYR ALA LEU GLY SEQRES 49 A 765 ASN PRO LYS ALA TRP TYR PRO PHE GLY TYR GLY LYS SER SEQRES 50 A 765 TYR SER SER PHE GLU TYR GLY ALA VAL LYS LEU ASP LYS SEQRES 51 A 765 THR ASN VAL THR GLU ALA ASP THR VAL THR VAL SER VAL SEQRES 52 A 765 ASP VAL LYS ASN THR ASP ALA THR ARG GLU GLY THR GLU SEQRES 53 A 765 VAL VAL GLN VAL TYR VAL VAL ASP GLU VAL ALA SER VAL SEQRES 54 A 765 VAL VAL PRO ASN ARG LEU LEU LYS GLY PHE LYS LYS VAL SEQRES 55 A 765 VAL ILE PRO ALA GLY GLN THR LYS THR VAL GLU ILE PRO SEQRES 56 A 765 LEU LYS VAL GLN ASP LEU GLY LEU TRP ASN VAL ARG MET SEQRES 57 A 765 LYS TYR VAL VAL GLU PRO GLY ALA PHE GLY VAL LEU VAL SEQRES 58 A 765 GLY SER SER SER GLU ASP ILE ARG GLY ASN ALA THR PHE SEQRES 59 A 765 TYR VAL GLN VAL ASP HIS HIS HIS HIS HIS HIS HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET XYS B 5 9 HET XYS B 6 9 HET XYS B 7 9 HET BGC C 1 12 HET XYS C 2 9 HET NAG D 1 14 HET NAG D 2 14 HET CA A 801 1 HET NAG A 802 14 HET NAG A 803 14 HET NAG A 804 14 HET NAG A 805 14 HET NAG A 806 14 HET NAG A 807 14 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 BGC 5(C6 H12 O6) FORMUL 2 XYS 4(C5 H10 O5) FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 5 CA CA 2+ FORMUL 12 HOH *603(H2 O) HELIX 1 AA1 PRO A 27 ASP A 31 5 5 HELIX 2 AA2 PRO A 35 MET A 47 1 13 HELIX 3 AA3 THR A 48 LEU A 56 1 9 HELIX 4 AA4 THR A 62 TRP A 64 5 3 HELIX 5 AA5 ASN A 73 GLY A 85 1 13 HELIX 6 AA6 PRO A 95 THR A 114 1 20 HELIX 7 AA7 SER A 140 CYS A 146 1 7 HELIX 8 AA8 ASN A 149 LEU A 167 1 19 HELIX 9 AA9 ARG A 187 THR A 191 5 5 HELIX 10 AB1 ASP A 195 SER A 212 1 18 HELIX 11 AB2 PRO A 228 LEU A 232 5 5 HELIX 12 AB3 GLY A 240 TRP A 248 1 9 HELIX 13 AB4 TRP A 248 MET A 257 1 10 HELIX 14 AB5 ASP A 279 THR A 284 1 6 HELIX 15 AB6 GLY A 302 ALA A 310 1 9 HELIX 16 AB7 ASP A 320 LEU A 329 1 10 HELIX 17 AB8 TYR A 342 GLU A 345 5 4 HELIX 18 AB9 THR A 346 ALA A 353 1 8 HELIX 19 AC1 ASP A 357 GLY A 376 1 20 HELIX 20 AC2 PRO A 386 SER A 388 5 3 HELIX 21 AC3 GLU A 389 ILE A 394 1 6 HELIX 22 AC4 THR A 396 ILE A 411 1 16 HELIX 23 AC5 PRO A 434 HIS A 437 5 4 HELIX 24 AC6 GLU A 449 ARG A 453 5 5 HELIX 25 AC7 THR A 456 GLY A 466 1 11 HELIX 26 AC8 GLY A 486 LYS A 496 1 11 HELIX 27 AC9 ALA A 536 ASP A 546 1 11 HELIX 28 AD1 TRP A 565 THR A 570 1 6 HELIX 29 AD2 GLN A 582 PHE A 592 1 11 HELIX 30 AD3 SER A 608 LEU A 612 5 5 HELIX 31 AD4 GLN A 741 LEU A 743 5 3 SHEET 1 AA1 4 GLN A 58 ASP A 60 0 SHEET 2 AA1 4 MET A 87 TYR A 89 1 O MET A 87 N GLY A 59 SHEET 3 AA1 4 ILE A 121 THR A 124 1 O GLN A 123 N PHE A 88 SHEET 4 AA1 4 HIS A 171 VAL A 172 1 O HIS A 171 N THR A 124 SHEET 1 AA2 3 VAL A 219 PHE A 222 0 SHEET 2 AA2 3 SER A 263 SER A 266 1 O MET A 265 N PHE A 222 SHEET 3 AA2 3 TRP A 296 THR A 298 1 O THR A 298 N ILE A 264 SHEET 1 AA3 2 SER A 270 TYR A 271 0 SHEET 2 AA3 2 ILE A 274 PRO A 275 -1 O ILE A 274 N TYR A 271 SHEET 1 AA4 6 VAL A 412 ASN A 416 0 SHEET 2 AA4 6 ALA A 572 PHE A 577 -1 O GLN A 575 N VAL A 412 SHEET 3 AA4 6 THR A 551 SER A 557 1 N LEU A 555 O VAL A 574 SHEET 4 AA4 6 VAL A 499 GLY A 505 1 N ALA A 500 O VAL A 552 SHEET 5 AA4 6 SER A 428 ILE A 432 1 N ILE A 432 O VAL A 501 SHEET 6 AA4 6 THR A 470 ALA A 474 1 O THR A 470 N ILE A 429 SHEET 1 AA5 2 TYR A 630 ILE A 631 0 SHEET 2 AA5 2 LEU A 637 GLU A 638 -1 O GLU A 638 N TYR A 630 SHEET 1 AA6 3 PHE A 663 TYR A 665 0 SHEET 2 AA6 3 THR A 680 ASN A 689 -1 O LYS A 688 N GLU A 664 SHEET 3 AA6 3 LYS A 669 LEU A 670 -1 N LYS A 669 O SER A 684 SHEET 1 AA7 3 PHE A 663 TYR A 665 0 SHEET 2 AA7 3 THR A 680 ASN A 689 -1 O LYS A 688 N GLU A 664 SHEET 3 AA7 3 THR A 731 LYS A 739 -1 O VAL A 734 N VAL A 685 SHEET 1 AA8 5 ASN A 674 VAL A 675 0 SHEET 2 AA8 5 ILE A 770 VAL A 778 1 O TYR A 777 N VAL A 675 SHEET 3 AA8 5 GLY A 757 GLY A 764 -1 N PHE A 759 O PHE A 776 SHEET 4 AA8 5 GLY A 696 ASP A 706 -1 N TYR A 703 O LEU A 762 SHEET 5 AA8 5 LEU A 717 ILE A 726 -1 O LYS A 719 N VAL A 702 SHEET 1 AA9 2 LEU A 745 TRP A 746 0 SHEET 2 AA9 2 TYR A 752 VAL A 753 -1 O VAL A 753 N LEU A 745 SSBOND 1 CYS A 308 CYS A 314 1555 1555 2.11 LINK ND2 ASN A 66 C1 NAG A 802 1555 1555 1.44 LINK ND2 ASN A 73 C1 NAG A 803 1555 1555 1.45 LINK ND2 ASN A 113 C1 NAG A 804 1555 1555 1.44 LINK ND2 ASN A 214 C1 NAG A 805 1555 1555 1.44 LINK ND2 ASN A 519 C1 NAG D 1 1555 1555 1.43 LINK ND2 ASN A 568 C1 NAG A 806 1555 1555 1.46 LINK ND2 ASN A 634 C1 NAG A 807 1555 1555 1.39 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.47 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.39 LINK O6 BGC B 2 C1 XYS B 7 1555 1555 1.43 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.43 LINK O6 BGC B 3 C1 XYS B 6 1555 1555 1.47 LINK O6 BGC B 4 C1 XYS B 5 1555 1555 1.41 LINK O6 BGC C 1 C1 XYS C 2 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK OD1 ASP A 706 CA CA A 801 1555 1555 2.17 LINK O VAL A 708 CA CA A 801 1555 1555 2.04 LINK CA CA A 801 O HOH A 927 1555 1555 2.12 LINK CA CA A 801 O HOH A 958 1555 1555 2.25 LINK CA CA A 801 O HOH A1077 1555 1555 2.01 LINK CA CA A 801 O HOH A1145 1555 1555 2.12 CISPEP 1 GLY A 174 PRO A 175 0 6.89 CISPEP 2 LYS A 220 HIS A 221 0 -2.39 CISPEP 3 PHE A 222 VAL A 223 0 -5.61 CISPEP 4 ASP A 317 PRO A 318 0 -4.76 CISPEP 5 LEU A 421 PRO A 422 0 2.02 CISPEP 6 LEU A 612 PRO A 613 0 -8.08 CISPEP 7 GLN A 642 TYR A 643 0 -4.63 CRYST1 94.197 94.197 189.003 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010616 0.006129 0.000000 0.00000 SCALE2 0.000000 0.012258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005291 0.00000