HEADER ANTITUMOR PROTEIN 08-MAR-21 7EAX TITLE CRYSTAL COMPLEX OF P53-V272M AND ANTIMONY ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TUMOR SUPPRESSOR P53, STRUCTURAL STABILIZATION, ANTITUMOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.LU,Y.TANG REVDAT 3 29-NOV-23 7EAX 1 REMARK REVDAT 2 27-APR-22 7EAX 1 JRNL REVDAT 1 16-FEB-22 7EAX 0 JRNL AUTH Y.TANG,H.SONG,Z.WANG,S.XIAO,X.XIANG,H.ZHAN,L.WU,J.WU,Y.XING, JRNL AUTH 2 Y.TAN,Y.LIANG,N.YAN,Y.LI,J.LI,J.WU,D.ZHENG,Y.JIA,Z.CHEN, JRNL AUTH 3 Y.LI,Q.ZHANG,J.ZHANG,H.ZENG,W.TAO,F.LIU,Y.WU,M.LU JRNL TITL REPURPOSING ANTIPARASITIC ANTIMONIALS TO NONCOVALENTLY JRNL TITL 2 RESCUE TEMPERATURE-SENSITIVE P53 MUTATIONS. JRNL REF CELL REP V. 39 10622 2022 JRNL REFN ESSN 2211-1247 JRNL PMID 35417717 JRNL DOI 10.1016/J.CELREP.2022.110622 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 25693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6084 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -43.90000 REMARK 3 B22 (A**2) : 67.71000 REMARK 3 B33 (A**2) : -23.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6311 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5646 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8551 ; 1.270 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13127 ; 1.056 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 788 ; 6.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 362 ;27.902 ;20.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1056 ;13.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 69 ;11.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 811 ; 0.036 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7125 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1378 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 97 288 B 97 288 5916 0.030 0.050 REMARK 3 2 A 96 289 C 96 289 5931 0.050 0.050 REMARK 3 3 A 97 288 D 97 288 5895 0.040 0.050 REMARK 3 4 B 97 288 C 97 288 5933 0.050 0.050 REMARK 3 5 B 97 289 D 97 289 5974 0.040 0.050 REMARK 3 6 C 97 288 D 97 288 5863 0.040 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.609 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H,-K,L REMARK 3 TWIN FRACTION : 0.391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300018704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978520 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OCJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 10% W/V PEG3350 AND REMARK 280 0.2M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.27550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 96 REMARK 465 SER D 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 205 O HOH C 501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 104.2 REMARK 620 3 CYS A 238 SG 106.1 117.7 REMARK 620 4 CYS A 242 SG 108.3 107.4 112.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.4 REMARK 620 3 CYS B 238 SG 109.3 119.5 REMARK 620 4 CYS B 242 SG 108.6 103.8 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 105.9 REMARK 620 3 CYS C 238 SG 108.3 118.7 REMARK 620 4 CYS C 242 SG 107.4 107.4 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 HIS D 179 ND1 106.2 REMARK 620 3 CYS D 238 SG 108.7 119.7 REMARK 620 4 CYS D 242 SG 107.0 105.8 108.8 REMARK 620 N 1 2 3 DBREF 7EAX A 96 289 UNP P04637 P53_HUMAN 96 289 DBREF 7EAX B 96 289 UNP P04637 P53_HUMAN 96 289 DBREF 7EAX C 96 289 UNP P04637 P53_HUMAN 96 289 DBREF 7EAX D 96 289 UNP P04637 P53_HUMAN 96 289 SEQADV 7EAX MET A 272 UNP P04637 VAL 272 VARIANT SEQADV 7EAX MET B 272 UNP P04637 VAL 272 VARIANT SEQADV 7EAX MET C 272 UNP P04637 VAL 272 VARIANT SEQADV 7EAX MET D 272 UNP P04637 VAL 272 VARIANT SEQRES 1 A 194 SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY SEQRES 2 A 194 PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER SEQRES 3 A 194 VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE SEQRES 4 A 194 CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL SEQRES 5 A 194 ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET SEQRES 6 A 194 ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL SEQRES 7 A 194 ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP SEQRES 8 A 194 GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY SEQRES 9 A 194 ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE SEQRES 10 A 194 ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL SEQRES 11 A 194 GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS SEQRES 12 A 194 ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE SEQRES 13 A 194 LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU SEQRES 14 A 194 LEU GLY ARG ASN SER PHE GLU MET ARG VAL CYS ALA CYS SEQRES 15 A 194 PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 B 194 SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY SEQRES 2 B 194 PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER SEQRES 3 B 194 VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE SEQRES 4 B 194 CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL SEQRES 5 B 194 ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET SEQRES 6 B 194 ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL SEQRES 7 B 194 ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP SEQRES 8 B 194 GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY SEQRES 9 B 194 ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE SEQRES 10 B 194 ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL SEQRES 11 B 194 GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS SEQRES 12 B 194 ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE SEQRES 13 B 194 LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU SEQRES 14 B 194 LEU GLY ARG ASN SER PHE GLU MET ARG VAL CYS ALA CYS SEQRES 15 B 194 PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 C 194 SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY SEQRES 2 C 194 PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER SEQRES 3 C 194 VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE SEQRES 4 C 194 CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL SEQRES 5 C 194 ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET SEQRES 6 C 194 ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL SEQRES 7 C 194 ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP SEQRES 8 C 194 GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY SEQRES 9 C 194 ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE SEQRES 10 C 194 ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL SEQRES 11 C 194 GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS SEQRES 12 C 194 ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE SEQRES 13 C 194 LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU SEQRES 14 C 194 LEU GLY ARG ASN SER PHE GLU MET ARG VAL CYS ALA CYS SEQRES 15 C 194 PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 D 194 SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR GLY SEQRES 2 D 194 PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SER SEQRES 3 D 194 VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET PHE SEQRES 4 D 194 CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP VAL SEQRES 5 D 194 ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG ALA MET SEQRES 6 D 194 ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL VAL SEQRES 7 D 194 ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER ASP SEQRES 8 D 194 GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU GLY SEQRES 9 D 194 ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR PHE SEQRES 10 D 194 ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU VAL SEQRES 11 D 194 GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET CYS SEQRES 12 D 194 ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO ILE SEQRES 13 D 194 LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN LEU SEQRES 14 D 194 LEU GLY ARG ASN SER PHE GLU MET ARG VAL CYS ALA CYS SEQRES 15 D 194 PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU HET ZN A 401 1 HET SB A 402 1 HET ZN B 401 1 HET SB B 402 1 HET ZN C 401 1 HET SB C 402 1 HET ZN D 401 1 HET SB D 402 1 HETNAM ZN ZINC ION HETNAM SB ANTIMONY (III) ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 SB 4(SB 3+) FORMUL 13 HOH *62(H2 O) HELIX 1 AA1 GLN A 165 MET A 169 5 5 HELIX 2 AA2 CYS A 176 CYS A 182 1 7 HELIX 3 AA3 CYS A 277 ASN A 288 1 12 HELIX 4 AA4 GLN B 165 MET B 169 5 5 HELIX 5 AA5 CYS B 176 CYS B 182 1 7 HELIX 6 AA6 CYS B 277 ASN B 288 1 12 HELIX 7 AA7 GLN C 165 MET C 169 5 5 HELIX 8 AA8 CYS C 176 CYS C 182 1 7 HELIX 9 AA9 CYS C 277 ASN C 288 1 12 HELIX 10 AB1 GLN D 165 MET D 169 5 5 HELIX 11 AB2 CYS D 176 CYS D 182 1 7 HELIX 12 AB3 CYS D 277 ASN D 288 1 12 SHEET 1 AA1 4 ARG A 110 GLY A 112 0 SHEET 2 AA1 4 CYS A 141 TRP A 146 -1 O TRP A 146 N ARG A 110 SHEET 3 AA1 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA1 4 ILE A 195 VAL A 197 -1 N ARG A 196 O ASN A 235 SHEET 1 AA2 7 CYS A 124 SER A 127 0 SHEET 2 AA2 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 AA2 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AA2 7 ILE A 251 GLU A 258 -1 N LEU A 257 O GLY A 266 SHEET 5 AA2 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 AA2 7 HIS A 214 PRO A 219 -1 O VAL A 216 N ALA A 159 SHEET 7 AA2 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 AA3 4 ARG B 110 GLY B 112 0 SHEET 2 AA3 4 CYS B 141 TRP B 146 -1 O TRP B 146 N ARG B 110 SHEET 3 AA3 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 AA3 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 AA4 7 CYS B 124 SER B 127 0 SHEET 2 AA4 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 AA4 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 AA4 7 ILE B 251 GLU B 258 -1 N LEU B 257 O GLY B 266 SHEET 5 AA4 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 AA4 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 AA4 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 AA5 4 ARG C 110 GLY C 112 0 SHEET 2 AA5 4 CYS C 141 TRP C 146 -1 O TRP C 146 N ARG C 110 SHEET 3 AA5 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 AA5 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 AA6 7 CYS C 124 SER C 127 0 SHEET 2 AA6 7 LYS C 132 CYS C 135 -1 O PHE C 134 N THR C 125 SHEET 3 AA6 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 AA6 7 ILE C 251 GLU C 258 -1 N LEU C 257 O GLY C 266 SHEET 5 AA6 7 ARG C 156 TYR C 163 -1 N MET C 160 O ILE C 254 SHEET 6 AA6 7 HIS C 214 PRO C 219 -1 O VAL C 216 N ALA C 159 SHEET 7 AA6 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 AA7 4 ARG D 110 GLY D 112 0 SHEET 2 AA7 4 CYS D 141 TRP D 146 -1 O TRP D 146 N ARG D 110 SHEET 3 AA7 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 AA7 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 AA8 7 CYS D 124 SER D 127 0 SHEET 2 AA8 7 LYS D 132 CYS D 135 -1 O PHE D 134 N THR D 125 SHEET 3 AA8 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 AA8 7 ILE D 251 GLU D 258 -1 N LEU D 257 O GLY D 266 SHEET 5 AA8 7 ARG D 156 TYR D 163 -1 N MET D 160 O ILE D 254 SHEET 6 AA8 7 HIS D 214 PRO D 219 -1 O VAL D 216 N ALA D 159 SHEET 7 AA8 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG CYS A 176 ZN ZN A 401 1555 1555 2.34 LINK ND1 HIS A 179 ZN ZN A 401 1555 1555 1.98 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 242 ZN ZN A 401 1555 1555 2.32 LINK SG CYS B 176 ZN ZN B 401 1555 1555 2.34 LINK ND1 HIS B 179 ZN ZN B 401 1555 1555 2.04 LINK SG CYS B 238 ZN ZN B 401 1555 1555 2.34 LINK SG CYS B 242 ZN ZN B 401 1555 1555 2.33 LINK SG CYS C 176 ZN ZN C 401 1555 1555 2.35 LINK ND1 HIS C 179 ZN ZN C 401 1555 1555 1.94 LINK SG CYS C 238 ZN ZN C 401 1555 1555 2.37 LINK SG CYS C 242 ZN ZN C 401 1555 1555 2.34 LINK SG CYS D 176 ZN ZN D 401 1555 1555 2.34 LINK ND1 HIS D 179 ZN ZN D 401 1555 1555 1.95 LINK SG CYS D 238 ZN ZN D 401 1555 1555 2.35 LINK SG CYS D 242 ZN ZN D 401 1555 1555 2.34 CRYST1 68.876 72.551 85.067 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011755 0.00000