HEADER SIGNALING PROTEIN 09-MAR-21 7EB9 TITLE THE STRUCTURE OF THE A20-BINDING INHIBITOR OF NF-KB 1 IN COMPLEX WITH TITLE 2 TETRA-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRA UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TNFAIP3-INTERACTING PROTEIN 1; COMPND 7 CHAIN: B, C; COMPND 8 SYNONYM: A20-BINDING INHIBITOR OF NF-KAPPA-B ACTIVATION 1,ABIN-1,HIV- COMPND 9 1 NEF-INTERACTING PROTEIN,NEF-ASSOCIATED FACTOR 1,NAF1,NIP40-1, COMPND 10 VIRION-ASSOCIATED NUCLEAR SHUTTLING PROTEIN,VAN,HVAN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TNIP1, KIAA0113, NAF1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS A20-BINDING INHIBITOR OF NF-KB, UBIQUITIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.LO,S.C.LIN REVDAT 2 29-NOV-23 7EB9 1 REMARK REVDAT 1 21-JUL-21 7EB9 0 JRNL AUTH J.Y.HONG,S.C.LIN,B.J.KUO,Y.C.LO JRNL TITL STRUCTURAL AND BIOCHEMICAL BASIS FOR HIGHER-ORDER ASSEMBLY JRNL TITL 2 BETWEEN A20-BINDING INHIBITOR OF NF-KAPPA B 1 (ABIN1) AND JRNL TITL 3 M1-LINKED UBIQUITINS. JRNL REF J.MOL.BIOL. V. 433 67116 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34161781 JRNL DOI 10.1016/J.JMB.2021.167116 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 10149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.680 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.0624 0.99 1468 152 0.1876 0.2413 REMARK 3 2 6.0624 - 4.8205 1.00 1372 151 0.2250 0.2253 REMARK 3 3 4.8205 - 4.2136 1.00 1330 156 0.1913 0.2383 REMARK 3 4 4.2136 - 3.8295 0.99 1347 124 0.2053 0.2591 REMARK 3 5 3.8295 - 3.5557 0.98 1314 125 0.2526 0.3213 REMARK 3 6 3.5557 - 3.3464 0.95 1255 145 0.2550 0.3155 REMARK 3 7 3.3464 - 3.2000 0.83 1081 129 0.3012 0.3659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3362 REMARK 3 ANGLE : 0.482 4509 REMARK 3 CHIRALITY : 0.039 525 REMARK 3 PLANARITY : 0.003 589 REMARK 3 DIHEDRAL : 8.013 2135 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3343 -5.2257 57.7466 REMARK 3 T TENSOR REMARK 3 T11: 0.5494 T22: 1.0609 REMARK 3 T33: 0.5252 T12: 0.1581 REMARK 3 T13: 0.1485 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 6.2899 L22: 6.1671 REMARK 3 L33: 4.1064 L12: -0.3875 REMARK 3 L13: -3.1217 L23: 0.9502 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: -1.9011 S13: -0.6333 REMARK 3 S21: 0.9315 S22: -0.0677 S23: 0.7642 REMARK 3 S31: -0.0700 S32: -0.2062 S33: 0.1600 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 276) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8847 37.6505 36.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.3792 REMARK 3 T33: 0.7004 T12: 0.0759 REMARK 3 T13: 0.0526 T23: 0.1429 REMARK 3 L TENSOR REMARK 3 L11: 9.4597 L22: 3.5259 REMARK 3 L33: 4.3444 L12: -2.1219 REMARK 3 L13: 1.4669 L23: 1.5488 REMARK 3 S TENSOR REMARK 3 S11: 0.3388 S12: -0.0278 S13: -0.6477 REMARK 3 S21: -0.0694 S22: -0.1519 S23: -0.4892 REMARK 3 S31: 0.1240 S32: 0.1922 S33: -0.1992 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.7449 37.0180 15.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.7972 T22: 0.6651 REMARK 3 T33: 0.5914 T12: 0.1308 REMARK 3 T13: 0.0470 T23: -0.1212 REMARK 3 L TENSOR REMARK 3 L11: 7.2416 L22: 2.9144 REMARK 3 L33: 4.9110 L12: 2.0616 REMARK 3 L13: -0.1596 L23: 0.9557 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: 0.9780 S13: -0.9635 REMARK 3 S21: -0.7392 S22: -0.0073 S23: -0.1242 REMARK 3 S31: 1.1416 S32: 0.3407 S33: 0.1232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 452 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7846 -6.0674 30.4931 REMARK 3 T TENSOR REMARK 3 T11: 0.4243 T22: 0.4953 REMARK 3 T33: 0.3375 T12: 0.0713 REMARK 3 T13: -0.0085 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.6706 L22: 1.9019 REMARK 3 L33: 6.2017 L12: -2.2652 REMARK 3 L13: 3.3214 L23: -5.1365 REMARK 3 S TENSOR REMARK 3 S11: -0.3097 S12: -0.4716 S13: -0.0202 REMARK 3 S21: -0.1944 S22: -0.1715 S23: -0.0743 REMARK 3 S31: -0.5487 S32: -1.7445 S33: -0.0262 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 446 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5001 -2.7398 32.8071 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.4776 REMARK 3 T33: 0.4838 T12: 0.0153 REMARK 3 T13: -0.0430 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 7.9233 L22: 6.3859 REMARK 3 L33: 8.4696 L12: -6.6987 REMARK 3 L13: 7.9715 L23: -7.4614 REMARK 3 S TENSOR REMARK 3 S11: -0.1841 S12: 0.7807 S13: 0.7233 REMARK 3 S21: 0.0206 S22: -0.9059 S23: -0.6892 REMARK 3 S31: -0.5056 S32: 1.0677 S33: 0.6077 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4076 14.3897 35.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.5651 T22: 0.5318 REMARK 3 T33: 0.4244 T12: 0.2367 REMARK 3 T13: -0.0823 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 5.6499 L22: 9.5518 REMARK 3 L33: 1.4088 L12: -1.0217 REMARK 3 L13: -0.3909 L23: -0.9572 REMARK 3 S TENSOR REMARK 3 S11: -0.2318 S12: 0.1203 S13: 0.6359 REMARK 3 S21: 0.4641 S22: 0.2262 S23: 0.3697 REMARK 3 S31: -0.6450 S32: -0.2754 S33: 0.0286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300021101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9766 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10149 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 26.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EAO REMARK 200 REMARK 200 REMARK: NEEDLE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE PH 6.0, 10% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.88850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.05750 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.88850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.05750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 372 REMARK 465 LEU A 373 REMARK 465 ARG A 374 REMARK 465 GLY A 375 REMARK 465 GLY A 376 REMARK 465 GLU B 415 REMARK 465 ILE B 416 REMARK 465 GLN B 417 REMARK 465 ARG B 418 REMARK 465 LEU B 419 REMARK 465 ASN B 420 REMARK 465 LYS B 421 REMARK 465 ALA B 422 REMARK 465 LEU B 423 REMARK 465 GLU B 424 REMARK 465 GLU B 425 REMARK 465 ALA B 426 REMARK 465 LEU B 427 REMARK 465 SER B 428 REMARK 465 ILE B 429 REMARK 465 GLN B 430 REMARK 465 THR B 431 REMARK 465 PRO B 432 REMARK 465 PRO B 433 REMARK 465 SER B 434 REMARK 465 SER B 435 REMARK 465 PRO B 436 REMARK 465 PRO B 437 REMARK 465 THR B 438 REMARK 465 ALA B 439 REMARK 465 PHE B 440 REMARK 465 GLY B 441 REMARK 465 SER B 442 REMARK 465 PRO B 443 REMARK 465 GLU B 444 REMARK 465 GLY B 445 REMARK 465 ALA B 446 REMARK 465 GLY B 447 REMARK 465 ALA B 448 REMARK 465 LEU B 449 REMARK 465 LEU B 450 REMARK 465 ARG B 451 REMARK 465 THR B 506 REMARK 465 GLN B 507 REMARK 465 LEU B 508 REMARK 465 LYS B 509 REMARK 465 ALA B 510 REMARK 465 PHE B 511 REMARK 465 LYS B 512 REMARK 465 ASP B 513 REMARK 465 GLU C 415 REMARK 465 ILE C 416 REMARK 465 GLN C 417 REMARK 465 ARG C 418 REMARK 465 LEU C 419 REMARK 465 ASN C 420 REMARK 465 LYS C 421 REMARK 465 ALA C 422 REMARK 465 LEU C 423 REMARK 465 GLU C 424 REMARK 465 GLU C 425 REMARK 465 ALA C 426 REMARK 465 LEU C 427 REMARK 465 SER C 428 REMARK 465 ILE C 429 REMARK 465 GLN C 430 REMARK 465 THR C 431 REMARK 465 PRO C 432 REMARK 465 PRO C 433 REMARK 465 SER C 434 REMARK 465 SER C 435 REMARK 465 PRO C 436 REMARK 465 PRO C 437 REMARK 465 THR C 438 REMARK 465 ALA C 439 REMARK 465 PHE C 440 REMARK 465 GLY C 441 REMARK 465 SER C 442 REMARK 465 PRO C 443 REMARK 465 GLU C 444 REMARK 465 GLY C 445 REMARK 465 THR C 506 REMARK 465 GLN C 507 REMARK 465 LEU C 508 REMARK 465 LYS C 509 REMARK 465 ALA C 510 REMARK 465 PHE C 511 REMARK 465 LYS C 512 REMARK 465 ASP C 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 164 NH1 ARG B 482 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 45 -97.02 -99.11 REMARK 500 ALA A 46 53.41 -98.19 REMARK 500 GLU A 64 19.41 58.66 REMARK 500 THR A 209 -83.14 -81.22 REMARK 500 LYS A 211 93.01 -64.67 REMARK 500 GLN A 262 -169.16 -115.95 REMARK 500 GLU A 264 18.72 59.62 REMARK 500 GLN A 340 32.04 -91.28 REMARK 500 VAL A 370 137.92 -178.06 REMARK 500 LEU B 503 35.09 -76.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EB9 A 1 376 UNP P0CG48 UBC_HUMAN 1 304 DBREF 7EB9 B 415 513 UNP Q15025 TNIP1_HUMAN 415 513 DBREF 7EB9 C 415 513 UNP Q15025 TNIP1_HUMAN 415 513 SEQADV 7EB9 THR B 506 UNP Q15025 ALA 506 CONFLICT SEQADV 7EB9 THR C 506 UNP Q15025 ALA 506 CONFLICT SEQRES 1 A 304 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 304 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 304 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 304 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 304 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 304 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 A 304 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 A 304 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 A 304 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 A 304 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 A 304 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 A 304 HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN ILE PHE SEQRES 13 A 304 VAL LYS THR LEU THR GLY LYS THR ILE THR LEU GLU VAL SEQRES 14 A 304 GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE SEQRES 15 A 304 GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU SEQRES 16 A 304 ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SEQRES 17 A 304 SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU SEQRES 18 A 304 VAL LEU ARG LEU ARG GLY GLY MET GLN ILE PHE VAL LYS SEQRES 19 A 304 THR LEU THR GLY LYS THR ILE THR LEU GLU VAL GLU PRO SEQRES 20 A 304 SER ASP THR ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP SEQRES 21 A 304 LYS GLU GLY ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE SEQRES 22 A 304 ALA GLY LYS GLN LEU GLU ASP GLY ARG THR LEU SER ASP SEQRES 23 A 304 TYR ASN ILE GLN LYS GLU SER THR LEU HIS LEU VAL LEU SEQRES 24 A 304 ARG LEU ARG GLY GLY SEQRES 1 B 99 GLU ILE GLN ARG LEU ASN LYS ALA LEU GLU GLU ALA LEU SEQRES 2 B 99 SER ILE GLN THR PRO PRO SER SER PRO PRO THR ALA PHE SEQRES 3 B 99 GLY SER PRO GLU GLY ALA GLY ALA LEU LEU ARG LYS GLN SEQRES 4 B 99 GLU LEU VAL THR GLN ASN GLU LEU LEU LYS GLN GLN VAL SEQRES 5 B 99 LYS ILE PHE GLU GLU ASP PHE GLN ARG GLU ARG SER ASP SEQRES 6 B 99 ARG GLU ARG MET ASN GLU GLU LYS GLU GLU LEU LYS LYS SEQRES 7 B 99 GLN VAL GLU LYS LEU GLN ALA GLN VAL THR LEU SER ASN SEQRES 8 B 99 THR GLN LEU LYS ALA PHE LYS ASP SEQRES 1 C 99 GLU ILE GLN ARG LEU ASN LYS ALA LEU GLU GLU ALA LEU SEQRES 2 C 99 SER ILE GLN THR PRO PRO SER SER PRO PRO THR ALA PHE SEQRES 3 C 99 GLY SER PRO GLU GLY ALA GLY ALA LEU LEU ARG LYS GLN SEQRES 4 C 99 GLU LEU VAL THR GLN ASN GLU LEU LEU LYS GLN GLN VAL SEQRES 5 C 99 LYS ILE PHE GLU GLU ASP PHE GLN ARG GLU ARG SER ASP SEQRES 6 C 99 ARG GLU ARG MET ASN GLU GLU LYS GLU GLU LEU LYS LYS SEQRES 7 C 99 GLN VAL GLU LYS LEU GLN ALA GLN VAL THR LEU SER ASN SEQRES 8 C 99 THR GLN LEU LYS ALA PHE LYS ASP HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR A 122 GLY A 135 1 14 HELIX 5 AA5 PRO A 137 ASP A 139 5 3 HELIX 6 AA6 THR A 222 GLY A 235 1 14 HELIX 7 AA7 PRO A 237 ASP A 239 5 3 HELIX 8 AA8 THR A 322 GLY A 335 1 14 HELIX 9 AA9 PRO A 337 GLN A 341 5 5 HELIX 10 AB1 LEU A 356 ASN A 360 5 5 HELIX 11 AB2 GLN B 453 LEU B 503 1 51 HELIX 12 AB3 GLY C 447 LEU C 503 1 57 SHEET 1 AA1 4 ILE A 13 GLU A 16 0 SHEET 2 AA1 4 GLN A 2 THR A 7 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 4 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA1 4 GLN A 41 ILE A 44 -1 N ILE A 44 O HIS A 68 SHEET 1 AA2 5 THR A 112 GLU A 116 0 SHEET 2 AA2 5 GLN A 102 LYS A 106 -1 N VAL A 105 O ILE A 113 SHEET 3 AA2 5 THR A 166 LEU A 171 1 O LEU A 167 N PHE A 104 SHEET 4 AA2 5 GLN A 141 PHE A 145 -1 N ILE A 144 O HIS A 168 SHEET 5 AA2 5 LYS A 148 GLN A 149 -1 O LYS A 148 N PHE A 145 SHEET 1 AA3 5 THR A 212 VAL A 217 0 SHEET 2 AA3 5 MET A 201 THR A 207 -1 N ILE A 203 O LEU A 215 SHEET 3 AA3 5 THR A 266 LEU A 271 1 O LEU A 267 N PHE A 204 SHEET 4 AA3 5 GLN A 241 PHE A 245 -1 N ILE A 244 O HIS A 268 SHEET 5 AA3 5 LYS A 248 GLN A 249 -1 O LYS A 248 N PHE A 245 SHEET 1 AA4 4 THR A 312 VAL A 317 0 SHEET 2 AA4 4 MET A 301 LYS A 306 -1 N ILE A 303 O LEU A 315 SHEET 3 AA4 4 THR A 366 LEU A 369 1 O LEU A 367 N LYS A 306 SHEET 4 AA4 4 LEU A 343 ILE A 344 -1 N ILE A 344 O HIS A 368 CRYST1 45.381 53.777 240.115 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004165 0.00000