data_7ECN # _entry.id 7ECN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ECN pdb_00007ecn 10.2210/pdb7ecn/pdb WWPDB D_1300021112 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-16 2 'Structure model' 1 1 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7ECN _pdbx_database_status.recvd_initial_deposition_date 2021-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 ? 'Tsudura, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'RNA duplex containing C-Ag-A base pairs' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Tsudura, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3') ; 3841.368 4 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 4 ? ? ? ? 3 water nat water 18.015 198 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGCCCGGACCC _entity_poly.pdbx_seq_one_letter_code_can GGGCCCGGACCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 A n 1 10 C n 1 11 C n 1 12 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 C 4 4 4 C C B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 G 8 8 8 G G B . n B 1 9 A 9 9 9 A A B . n B 1 10 C 10 10 10 C C B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 C 5 5 5 C C C . n C 1 6 C 6 6 6 C C C . n C 1 7 G 7 7 7 G G C . n C 1 8 G 8 8 8 G G C . n C 1 9 A 9 9 9 A A C . n C 1 10 C 10 10 10 C C C . n C 1 11 C 11 11 11 C C C . n C 1 12 C 12 12 12 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 G 3 3 3 G G D . n D 1 4 C 4 4 4 C C D . n D 1 5 C 5 5 5 C C D . n D 1 6 C 6 6 6 C C D . n D 1 7 G 7 7 7 G G D . n D 1 8 G 8 8 8 G G D . n D 1 9 A 9 9 9 A A D . n D 1 10 C 10 10 10 C C D . n D 1 11 C 11 11 11 C C D . n D 1 12 C 12 12 12 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG 1 101 1 AG AG A . F 2 AG 1 101 2 AG AG B . G 2 AG 1 101 4 AG AG C . H 2 AG 1 101 3 AG AG D . I 3 HOH 1 201 94 HOH HOH A . I 3 HOH 2 202 167 HOH HOH A . I 3 HOH 3 203 161 HOH HOH A . I 3 HOH 4 204 174 HOH HOH A . I 3 HOH 5 205 2 HOH HOH A . I 3 HOH 6 206 88 HOH HOH A . I 3 HOH 7 207 134 HOH HOH A . I 3 HOH 8 208 91 HOH HOH A . I 3 HOH 9 209 144 HOH HOH A . I 3 HOH 10 210 149 HOH HOH A . I 3 HOH 11 211 126 HOH HOH A . I 3 HOH 12 212 1 HOH HOH A . I 3 HOH 13 213 184 HOH HOH A . I 3 HOH 14 214 113 HOH HOH A . I 3 HOH 15 215 165 HOH HOH A . I 3 HOH 16 216 198 HOH HOH A . I 3 HOH 17 217 84 HOH HOH A . I 3 HOH 18 218 22 HOH HOH A . I 3 HOH 19 219 42 HOH HOH A . I 3 HOH 20 220 103 HOH HOH A . I 3 HOH 21 221 104 HOH HOH A . I 3 HOH 22 222 63 HOH HOH A . I 3 HOH 23 223 58 HOH HOH A . I 3 HOH 24 224 115 HOH HOH A . I 3 HOH 25 225 216 HOH HOH A . I 3 HOH 26 226 110 HOH HOH A . I 3 HOH 27 227 55 HOH HOH A . I 3 HOH 28 228 202 HOH HOH A . I 3 HOH 29 229 111 HOH HOH A . I 3 HOH 30 230 143 HOH HOH A . I 3 HOH 31 231 106 HOH HOH A . I 3 HOH 32 232 218 HOH HOH A . I 3 HOH 33 233 57 HOH HOH A . I 3 HOH 34 234 97 HOH HOH A . I 3 HOH 35 235 122 HOH HOH A . I 3 HOH 36 236 25 HOH HOH A . I 3 HOH 37 237 147 HOH HOH A . I 3 HOH 38 238 108 HOH HOH A . I 3 HOH 39 239 153 HOH HOH A . I 3 HOH 40 240 21 HOH HOH A . I 3 HOH 41 241 71 HOH HOH A . I 3 HOH 42 242 157 HOH HOH A . I 3 HOH 43 243 36 HOH HOH A . I 3 HOH 44 244 217 HOH HOH A . I 3 HOH 45 245 121 HOH HOH A . I 3 HOH 46 246 150 HOH HOH A . J 3 HOH 1 201 37 HOH HOH B . J 3 HOH 2 202 65 HOH HOH B . J 3 HOH 3 203 59 HOH HOH B . J 3 HOH 4 204 73 HOH HOH B . J 3 HOH 5 205 75 HOH HOH B . J 3 HOH 6 206 34 HOH HOH B . J 3 HOH 7 207 72 HOH HOH B . J 3 HOH 8 208 151 HOH HOH B . J 3 HOH 9 209 182 HOH HOH B . J 3 HOH 10 210 132 HOH HOH B . J 3 HOH 11 211 28 HOH HOH B . J 3 HOH 12 212 77 HOH HOH B . J 3 HOH 13 213 136 HOH HOH B . J 3 HOH 14 214 172 HOH HOH B . J 3 HOH 15 215 85 HOH HOH B . J 3 HOH 16 216 80 HOH HOH B . J 3 HOH 17 217 53 HOH HOH B . J 3 HOH 18 218 44 HOH HOH B . J 3 HOH 19 219 16 HOH HOH B . J 3 HOH 20 220 40 HOH HOH B . J 3 HOH 21 221 31 HOH HOH B . J 3 HOH 22 222 171 HOH HOH B . J 3 HOH 23 223 12 HOH HOH B . J 3 HOH 24 224 51 HOH HOH B . J 3 HOH 25 225 123 HOH HOH B . J 3 HOH 26 226 17 HOH HOH B . J 3 HOH 27 227 20 HOH HOH B . J 3 HOH 28 228 8 HOH HOH B . J 3 HOH 29 229 64 HOH HOH B . J 3 HOH 30 230 105 HOH HOH B . J 3 HOH 31 231 169 HOH HOH B . J 3 HOH 32 232 69 HOH HOH B . J 3 HOH 33 233 26 HOH HOH B . J 3 HOH 34 234 35 HOH HOH B . J 3 HOH 35 235 43 HOH HOH B . J 3 HOH 36 236 68 HOH HOH B . J 3 HOH 37 237 119 HOH HOH B . J 3 HOH 38 238 9 HOH HOH B . J 3 HOH 39 239 39 HOH HOH B . J 3 HOH 40 240 67 HOH HOH B . J 3 HOH 41 241 173 HOH HOH B . J 3 HOH 42 242 93 HOH HOH B . J 3 HOH 43 243 48 HOH HOH B . J 3 HOH 44 244 60 HOH HOH B . J 3 HOH 45 245 11 HOH HOH B . J 3 HOH 46 246 62 HOH HOH B . J 3 HOH 47 247 128 HOH HOH B . J 3 HOH 48 248 139 HOH HOH B . J 3 HOH 49 249 125 HOH HOH B . J 3 HOH 50 250 129 HOH HOH B . J 3 HOH 51 251 212 HOH HOH B . J 3 HOH 52 252 124 HOH HOH B . J 3 HOH 53 253 74 HOH HOH B . J 3 HOH 54 254 131 HOH HOH B . J 3 HOH 55 255 135 HOH HOH B . J 3 HOH 56 256 117 HOH HOH B . J 3 HOH 57 257 177 HOH HOH B . J 3 HOH 58 258 112 HOH HOH B . K 3 HOH 1 201 78 HOH HOH C . K 3 HOH 2 202 95 HOH HOH C . K 3 HOH 3 203 175 HOH HOH C . K 3 HOH 4 204 193 HOH HOH C . K 3 HOH 5 205 162 HOH HOH C . K 3 HOH 6 206 83 HOH HOH C . K 3 HOH 7 207 164 HOH HOH C . K 3 HOH 8 208 118 HOH HOH C . K 3 HOH 9 209 56 HOH HOH C . K 3 HOH 10 210 101 HOH HOH C . K 3 HOH 11 211 49 HOH HOH C . K 3 HOH 12 212 102 HOH HOH C . K 3 HOH 13 213 170 HOH HOH C . K 3 HOH 14 214 87 HOH HOH C . K 3 HOH 15 215 6 HOH HOH C . K 3 HOH 16 216 23 HOH HOH C . K 3 HOH 17 217 213 HOH HOH C . K 3 HOH 18 218 145 HOH HOH C . K 3 HOH 19 219 89 HOH HOH C . K 3 HOH 20 220 18 HOH HOH C . K 3 HOH 21 221 120 HOH HOH C . K 3 HOH 22 222 47 HOH HOH C . K 3 HOH 23 223 30 HOH HOH C . K 3 HOH 24 224 33 HOH HOH C . K 3 HOH 25 225 221 HOH HOH C . K 3 HOH 26 226 196 HOH HOH C . K 3 HOH 27 227 190 HOH HOH C . K 3 HOH 28 228 114 HOH HOH C . K 3 HOH 29 229 90 HOH HOH C . K 3 HOH 30 230 133 HOH HOH C . K 3 HOH 31 231 188 HOH HOH C . K 3 HOH 32 232 61 HOH HOH C . K 3 HOH 33 233 29 HOH HOH C . K 3 HOH 34 234 116 HOH HOH C . K 3 HOH 35 235 86 HOH HOH C . K 3 HOH 36 236 195 HOH HOH C . K 3 HOH 37 237 13 HOH HOH C . K 3 HOH 38 238 127 HOH HOH C . K 3 HOH 39 239 130 HOH HOH C . K 3 HOH 40 240 181 HOH HOH C . K 3 HOH 41 241 163 HOH HOH C . K 3 HOH 42 242 158 HOH HOH C . K 3 HOH 43 243 96 HOH HOH C . K 3 HOH 44 244 142 HOH HOH C . K 3 HOH 45 245 219 HOH HOH C . K 3 HOH 46 246 148 HOH HOH C . K 3 HOH 47 247 214 HOH HOH C . K 3 HOH 48 248 159 HOH HOH C . K 3 HOH 49 249 152 HOH HOH C . K 3 HOH 50 250 197 HOH HOH C . K 3 HOH 51 251 166 HOH HOH C . K 3 HOH 52 252 215 HOH HOH C . K 3 HOH 53 253 109 HOH HOH C . L 3 HOH 1 201 81 HOH HOH D . L 3 HOH 2 202 186 HOH HOH D . L 3 HOH 3 203 220 HOH HOH D . L 3 HOH 4 204 5 HOH HOH D . L 3 HOH 5 205 24 HOH HOH D . L 3 HOH 6 206 52 HOH HOH D . L 3 HOH 7 207 54 HOH HOH D . L 3 HOH 8 208 10 HOH HOH D . L 3 HOH 9 209 183 HOH HOH D . L 3 HOH 10 210 191 HOH HOH D . L 3 HOH 11 211 45 HOH HOH D . L 3 HOH 12 212 138 HOH HOH D . L 3 HOH 13 213 146 HOH HOH D . L 3 HOH 14 214 92 HOH HOH D . L 3 HOH 15 215 15 HOH HOH D . L 3 HOH 16 216 210 HOH HOH D . L 3 HOH 17 217 140 HOH HOH D . L 3 HOH 18 218 14 HOH HOH D . L 3 HOH 19 219 82 HOH HOH D . L 3 HOH 20 220 7 HOH HOH D . L 3 HOH 21 221 66 HOH HOH D . L 3 HOH 22 222 3 HOH HOH D . L 3 HOH 23 223 19 HOH HOH D . L 3 HOH 24 224 107 HOH HOH D . L 3 HOH 25 225 70 HOH HOH D . L 3 HOH 26 226 4 HOH HOH D . L 3 HOH 27 227 79 HOH HOH D . L 3 HOH 28 228 32 HOH HOH D . L 3 HOH 29 229 180 HOH HOH D . L 3 HOH 30 230 137 HOH HOH D . L 3 HOH 31 231 38 HOH HOH D . L 3 HOH 32 232 27 HOH HOH D . L 3 HOH 33 233 155 HOH HOH D . L 3 HOH 34 234 99 HOH HOH D . L 3 HOH 35 235 98 HOH HOH D . L 3 HOH 36 236 41 HOH HOH D . L 3 HOH 37 237 50 HOH HOH D . L 3 HOH 38 238 100 HOH HOH D . L 3 HOH 39 239 194 HOH HOH D . L 3 HOH 40 240 168 HOH HOH D . L 3 HOH 41 241 206 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 102.240 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7ECN _cell.details ? _cell.formula_units_Z ? _cell.length_a 35.784 _cell.length_a_esd ? _cell.length_b 41.482 _cell.length_b_esd ? _cell.length_c 45.934 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ECN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ECN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MOPS, MPD, spermine, potassium nitrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-21 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 25.040 _reflns.entry_id 7ECN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.600 _reflns.d_resolution_low 34.970 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17296 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.278 _reflns.pdbx_Rmerge_I_obs 0.040 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.460 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.951 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.048 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 56696 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.600 1.640 ? 3.860 ? 4043 1286 ? 1261 98.100 ? ? ? ? 0.291 ? ? ? ? ? ? ? ? 3.206 ? ? ? ? 0.350 ? ? 1 1 0.965 ? ? 1.640 1.690 ? 4.870 ? 3942 1248 ? 1236 99.000 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 3.189 ? ? ? ? 0.275 ? ? 2 1 0.988 ? ? 1.690 1.740 ? 6.220 ? 3928 1208 ? 1202 99.500 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? 3.268 ? ? ? ? 0.207 ? ? 3 1 0.988 ? ? 1.740 1.790 ? 7.140 ? 4056 1197 ? 1192 99.600 ? ? ? ? 0.174 ? ? ? ? ? ? ? ? 3.403 ? ? ? ? 0.207 ? ? 4 1 0.978 ? ? 1.790 1.850 ? 8.320 ? 3819 1126 ? 1123 99.700 ? ? ? ? 0.153 ? ? ? ? ? ? ? ? 3.401 ? ? ? ? 0.182 ? ? 5 1 0.974 ? ? 1.850 1.920 ? 9.510 ? 3632 1112 ? 1102 99.100 ? ? ? ? 0.135 ? ? ? ? ? ? ? ? 3.296 ? ? ? ? 0.162 ? ? 6 1 0.982 ? ? 1.920 1.990 ? 10.980 ? 3375 1079 ? 1075 99.600 ? ? ? ? 0.112 ? ? ? ? ? ? ? ? 3.140 ? ? ? ? 0.135 ? ? 7 1 0.985 ? ? 1.990 2.070 ? 13.250 ? 3332 1035 ? 1031 99.600 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 3.232 ? ? ? ? 0.108 ? ? 8 1 0.992 ? ? 2.070 2.160 ? 15.200 ? 3329 975 ? 971 99.600 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 3.428 ? ? ? ? 0.090 ? ? 9 1 0.994 ? ? 2.160 2.270 ? 17.940 ? 3187 944 ? 937 99.300 ? ? ? ? 0.063 ? ? ? ? ? ? ? ? 3.401 ? ? ? ? 0.075 ? ? 10 1 0.996 ? ? 2.270 2.390 ? 19.820 ? 3089 917 ? 911 99.300 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 3.391 ? ? ? ? 0.071 ? ? 11 1 0.995 ? ? 2.390 2.530 ? 22.690 ? 2607 827 ? 826 99.900 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 3.156 ? ? ? ? 0.054 ? ? 12 1 0.997 ? ? 2.530 2.710 ? 24.480 ? 2631 816 ? 807 98.900 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 3.260 ? ? ? ? 0.050 ? ? 13 1 0.997 ? ? 2.710 2.930 ? 28.630 ? 2538 747 ? 741 99.200 ? ? ? ? 0.034 ? ? ? ? ? ? ? ? 3.425 ? ? ? ? 0.040 ? ? 14 1 0.999 ? ? 2.930 3.210 ? 33.070 ? 2289 698 ? 682 97.700 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 3.356 ? ? ? ? 0.028 ? ? 15 1 1.000 ? ? 3.210 3.580 ? 34.230 ? 1878 630 ? 612 97.100 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 3.069 ? ? ? ? 0.029 ? ? 16 1 0.999 ? ? 3.580 4.140 ? 35.810 ? 1701 552 ? 542 98.200 ? ? ? ? 0.023 ? ? ? ? ? ? ? ? 3.138 ? ? ? ? 0.027 ? ? 17 1 0.999 ? ? 4.140 5.070 ? 39.320 ? 1572 472 ? 472 100.000 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 3.331 ? ? ? ? 0.030 ? ? 18 1 0.999 ? ? 5.070 7.170 ? 36.490 ? 1108 371 ? 367 98.900 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 3.019 ? ? ? ? 0.029 ? ? 19 1 0.999 ? ? 7.170 34.970 ? 40.230 ? 640 212 ? 206 97.200 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? 3.107 ? ? ? ? 0.023 ? ? 20 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 38.480 _refine.B_iso_mean 19.9479 _refine.B_iso_min 11.190 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7ECN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 34.9700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17221 _refine.ls_number_reflns_R_free 1721 _refine.ls_number_reflns_R_work 15500 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.7600 _refine.ls_percent_reflns_R_free 9.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1730 _refine.ls_R_factor_R_free 0.2034 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1696 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.5400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 34.9700 _refine_hist.number_atoms_solvent 198 _refine_hist.number_atoms_total 1218 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 48 _refine_hist.pdbx_B_iso_mean_ligand 21.36 _refine_hist.pdbx_B_iso_mean_solvent 27.19 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1016 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6000 1.6500 1407 . 142 1265 97.0000 . . . 0.2913 0.0000 0.2271 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.6500 1.7000 1421 . 140 1281 98.0000 . . . 0.2503 0.0000 0.1964 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.7000 1.7600 1424 . 143 1281 99.0000 . . . 0.2444 0.0000 0.1841 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.7600 1.8400 1426 . 142 1284 100.0000 . . . 0.2957 0.0000 0.1915 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.8400 1.9200 1448 . 146 1302 99.0000 . . . 0.2327 0.0000 0.1865 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 1.9200 2.0200 1438 . 143 1295 100.0000 . . . 0.2249 0.0000 0.1791 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.0200 2.1500 1427 . 144 1283 100.0000 . . . 0.2173 0.0000 0.1818 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.1500 2.3100 1450 . 144 1306 99.0000 . . . 0.2450 0.0000 0.1836 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.3100 2.5400 1452 . 144 1308 100.0000 . . . 0.2032 0.0000 0.1779 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.5400 2.9100 1432 . 145 1287 99.0000 . . . 0.2272 0.0000 0.1851 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 2.9100 3.6700 1412 . 139 1273 96.0000 . . . 0.1662 0.0000 0.1695 . . . . . . . 12 . . . 'X-RAY DIFFRACTION' 3.6700 34.9700 1484 . 149 1335 99.0000 . . . 0.1567 0.0000 0.1273 . . . . . . . 12 . . . # _struct.entry_id 7ECN _struct.title 'RNA duplex containing C-Ag-A base pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ECN _struct_keywords.text 'Metal-mediated base pair, Silver, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7ECN _struct_ref.pdbx_db_accession 7ECN _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7ECN A 1 ? 12 ? 7ECN 1 ? 12 ? 1 12 2 1 7ECN B 1 ? 12 ? 7ECN 1 ? 12 ? 1 12 3 1 7ECN C 1 ? 12 ? 7ECN 1 ? 12 ? 1 12 4 1 7ECN D 1 ? 12 ? 7ECN 1 ? 12 ? 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1520 ? 1 MORE -19 ? 1 'SSA (A^2)' 4430 ? 2 'ABSA (A^2)' 1490 ? 2 MORE -20 ? 2 'SSA (A^2)' 4360 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I,J 2 1 C,D,G,H,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 4 N3 ? ? ? 1_555 E AG . AG ? ? A C 4 A AG 101 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc2 metalc ? ? A A 9 N1 ? ? ? 1_555 F AG . AG ? ? A A 9 B AG 101 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc3 metalc ? ? E AG . AG ? ? ? 1_555 B A 9 N1 ? ? A AG 101 B A 9 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc4 metalc ? ? B C 4 N3 ? ? ? 1_555 F AG . AG ? ? B C 4 B AG 101 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc5 metalc ? ? C C 4 N3 ? ? ? 1_555 G AG . AG ? ? C C 4 C AG 101 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc6 metalc ? ? C A 9 N1 ? ? ? 1_555 H AG . AG ? ? C A 9 D AG 101 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc7 metalc ? ? G AG . AG ? ? ? 1_555 D A 9 N1 ? ? C AG 101 D A 9 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc8 metalc ? ? D C 4 N3 ? ? ? 1_555 H AG . AG ? ? D C 4 D AG 101 1_555 ? ? ? ? ? ? ? 2.088 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A C 4 ? A C 4 ? 1_555 AG ? E AG . ? A AG 101 ? 1_555 N1 ? B A 9 ? B A 9 ? 1_555 161.8 ? 2 N1 ? A A 9 ? A A 9 ? 1_555 AG ? F AG . ? B AG 101 ? 1_555 N3 ? B C 4 ? B C 4 ? 1_555 167.8 ? 3 N3 ? C C 4 ? C C 4 ? 1_555 AG ? G AG . ? C AG 101 ? 1_555 N1 ? D A 9 ? D A 9 ? 1_555 161.7 ? 4 N1 ? C A 9 ? C A 9 ? 1_555 AG ? H AG . ? D AG 101 ? 1_555 N3 ? D C 4 ? D C 4 ? 1_555 166.7 ? # _pdbx_entry_details.entry_id 7ECN _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AG AG AG N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7ECN 'double helix' 7ECN 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -0.242 -0.140 -0.036 -4.473 -5.757 -1.247 1 A_G1:C12_B A 1 ? B 12 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.276 -0.066 -0.094 -6.321 -10.863 1.007 2 A_G2:C11_B A 2 ? B 11 ? 19 1 1 A G 3 1_555 B C 10 1_555 -0.300 -0.149 -0.155 -9.365 -12.706 -2.358 3 A_G3:C10_B A 3 ? B 10 ? 19 1 1 A C 5 1_555 B G 8 1_555 0.319 -0.185 -0.145 3.387 -5.808 -2.165 4 A_C5:G8_B A 5 ? B 8 ? 19 1 1 A C 6 1_555 B G 7 1_555 0.134 -0.126 -0.027 1.631 -6.908 -0.403 5 A_C6:G7_B A 6 ? B 7 ? 19 1 1 A G 7 1_555 B C 6 1_555 -0.151 -0.145 0.081 0.683 -7.431 -4.432 6 A_G7:C6_B A 7 ? B 6 ? 19 1 1 A G 8 1_555 B C 5 1_555 -0.172 -0.170 -0.210 -6.702 -14.268 -0.764 7 A_G8:C5_B A 8 ? B 5 ? 19 1 1 A C 10 1_555 B G 3 1_555 0.207 -0.077 -0.371 14.168 -14.411 2.422 8 A_C10:G3_B A 10 ? B 3 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.128 -0.164 -0.146 7.573 -14.219 1.215 9 A_C11:G2_B A 11 ? B 2 ? 19 1 1 A C 12 1_555 B G 1 1_555 0.258 -0.187 -0.104 5.602 -6.408 -1.488 10 A_C12:G1_B A 12 ? B 1 ? 19 1 1 D G 1 1_555 C C 12 1_555 -0.342 -0.071 -0.237 -10.434 -6.298 1.802 11 D_G1:C12_C D 1 ? C 12 ? 19 1 1 D G 2 1_555 C C 11 1_555 -0.243 -0.179 -0.085 -3.840 -7.561 -1.715 12 D_G2:C11_C D 2 ? C 11 ? 19 1 1 D G 3 1_555 C C 10 1_555 -0.302 -0.133 -0.066 -7.939 -17.772 1.249 13 D_G3:C10_C D 3 ? C 10 ? 19 1 1 D C 5 1_555 C G 8 1_555 0.248 -0.252 -0.057 6.815 -15.570 0.435 14 D_C5:G8_C D 5 ? C 8 ? 19 1 1 D C 6 1_555 C G 7 1_555 0.182 -0.116 -0.021 5.092 -15.227 -0.764 15 D_C6:G7_C D 6 ? C 7 ? 19 1 1 D G 7 1_555 C C 6 1_555 -0.058 -0.217 0.024 -1.562 -11.307 -2.219 16 D_G7:C6_C D 7 ? C 6 ? 19 1 1 D G 8 1_555 C C 5 1_555 0.278 -0.188 -0.091 -6.695 -18.126 -1.892 17 D_G8:C5_C D 8 ? C 5 ? 19 1 1 D C 10 1_555 C G 3 1_555 0.083 -0.092 -0.070 9.045 -20.601 1.926 18 D_C10:G3_C D 10 ? C 3 ? 19 1 1 D C 11 1_555 C G 2 1_555 0.316 -0.236 0.138 -2.621 -13.204 -1.044 19 D_C11:G2_C D 11 ? C 2 ? 19 1 1 D C 12 1_555 C G 1 1_555 0.283 -0.148 0.182 1.146 -6.001 -1.513 20 D_C12:G1_C D 12 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A G 2 1_555 B C 11 1_555 0.305 -2.024 3.365 0.958 4.005 30.155 -4.649 -0.391 3.085 7.654 -1.831 30.429 1 AA_G1G2:C11C12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A G 2 1_555 B C 11 1_555 A G 3 1_555 B C 10 1_555 -0.557 -1.912 3.346 -1.278 7.573 29.572 -5.069 0.815 2.802 14.530 2.453 30.532 2 AA_G2G3:C10C11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A G 3 1_555 B C 10 1_555 A C 5 1_555 B G 8 1_555 -0.160 -3.656 6.135 -1.186 15.048 61.516 -4.667 0.060 5.208 14.480 1.142 63.164 3 AA_G3C5:G8C10_BB A 3 ? B 10 ? A 5 ? B 8 ? 1 A C 5 1_555 B G 8 1_555 A C 6 1_555 B G 7 1_555 0.718 -1.882 3.254 2.117 5.647 32.265 -4.257 -0.925 2.932 10.052 -3.769 32.809 4 AA_C5C6:G7G8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A C 6 1_555 B G 7 1_555 A G 7 1_555 B C 6 1_555 -1.214 -2.070 3.264 -2.618 7.352 25.455 -6.292 2.000 2.680 16.207 5.770 26.606 5 AA_C6G7:C6G7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A G 7 1_555 B C 6 1_555 A G 8 1_555 B C 5 1_555 0.664 -1.775 3.454 3.368 10.209 32.973 -4.534 -0.603 2.847 17.420 -5.747 34.635 6 AA_G7G8:C5C6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A G 8 1_555 B C 5 1_555 A C 10 1_555 B G 3 1_555 0.061 -3.760 5.996 -0.403 3.745 55.710 -4.403 -0.106 5.752 4.002 0.430 55.827 7 AA_G8C10:G3C5_BB A 8 ? B 5 ? A 10 ? B 3 ? 1 A C 10 1_555 B G 3 1_555 A C 11 1_555 B G 2 1_555 -0.498 -1.896 3.422 -3.499 11.997 32.265 -4.968 0.321 2.610 20.646 6.023 34.540 8 AA_C10C11:G2G3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A C 11 1_555 B G 2 1_555 A C 12 1_555 B G 1 1_555 -0.424 -1.786 3.337 0.002 10.501 30.602 -4.946 0.762 2.598 19.200 -0.004 32.313 9 AA_C11C12:G1G2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 A C 12 1_555 B G 1 1_555 D G 1 1_555 C C 12 1_555 1.492 -1.984 3.510 4.912 12.492 34.277 -4.859 -1.694 2.821 20.259 -7.966 36.737 10 AD_C12G1:C12G1_CB A 12 ? B 1 ? D 1 ? C 12 ? 1 D G 1 1_555 C C 12 1_555 D G 2 1_555 C C 11 1_555 -0.904 -1.728 3.115 -2.382 6.179 29.863 -4.393 1.285 2.772 11.807 4.552 30.573 11 DD_G1G2:C11C12_CC D 1 ? C 12 ? D 2 ? C 11 ? 1 D G 2 1_555 C C 11 1_555 D G 3 1_555 C C 10 1_555 0.369 -1.714 3.372 0.728 8.096 32.465 -4.277 -0.525 2.880 14.205 -1.277 33.441 12 DD_G2G3:C10C11_CC D 2 ? C 11 ? D 3 ? C 10 ? 1 D G 3 1_555 C C 10 1_555 D C 5 1_555 C G 8 1_555 0.074 -3.063 5.833 0.011 11.939 62.596 -3.797 -0.070 5.233 11.381 -0.010 63.611 13 DD_G3C5:G8C10_CC D 3 ? C 10 ? D 5 ? C 8 ? 1 D C 5 1_555 C G 8 1_555 D C 6 1_555 C G 7 1_555 -0.243 -1.609 3.257 -1.216 11.117 32.918 -4.265 0.235 2.600 18.949 2.073 34.716 14 DD_C5C6:G7G8_CC D 5 ? C 8 ? D 6 ? C 7 ? 1 D C 6 1_555 C G 7 1_555 D G 7 1_555 C C 6 1_555 -0.335 -1.568 3.245 -0.627 16.762 31.032 -4.795 0.472 2.150 28.840 1.080 35.177 15 DD_C6G7:C6G7_CC D 6 ? C 7 ? D 7 ? C 6 ? 1 D G 7 1_555 C C 6 1_555 D G 8 1_555 C C 5 1_555 0.642 -1.542 3.328 3.428 11.577 35.043 -3.918 -0.571 2.747 18.559 -5.495 37.002 16 DD_G7G8:C5C6_CC D 7 ? C 6 ? D 8 ? C 5 ? 1 D G 8 1_555 C C 5 1_555 D C 10 1_555 C G 3 1_555 -0.444 -3.166 5.857 -1.823 6.505 57.982 -3.843 0.288 5.515 6.686 1.873 58.341 17 DD_G8C10:G3C5_CC D 8 ? C 5 ? D 10 ? C 3 ? 1 D C 10 1_555 C G 3 1_555 D C 11 1_555 C G 2 1_555 -0.749 -1.525 3.456 -2.661 11.118 35.175 -3.905 0.823 2.905 17.824 4.266 36.930 18 DD_C10C11:G2G3_CC D 10 ? C 3 ? D 11 ? C 2 ? 1 D C 11 1_555 C G 2 1_555 D C 12 1_555 C G 1 1_555 0.495 -1.463 3.195 2.140 4.041 31.969 -3.316 -0.528 3.018 7.289 -3.861 32.286 19 DD_C11C12:G1G2_CC D 11 ? C 2 ? D 12 ? C 1 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 24245037 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 7ECN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.027945 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006064 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022277 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG C N O P # loop_ #