data_7ECP # _entry.id 7ECP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ECP pdb_00007ecp 10.2210/pdb7ecp/pdb WWPDB D_1300021137 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-16 2 'Structure model' 1 1 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7ECP _pdbx_database_status.recvd_initial_deposition_date 2021-03-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 0000-0002-5682-3685 'Tsudura, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'RNA duplex containing C-Ag-U' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 0000-0002-5682-3685 primary 'Tsudura, A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*UP*CP*CP*C)-3') ; 3818.328 4 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 4 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGCCCGGUCCC _entity_poly.pdbx_seq_one_letter_code_can GGGCCCGGUCCC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 C n 1 6 C n 1 7 G n 1 8 G n 1 9 U n 1 10 C n 1 11 C n 1 12 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 G 7 7 7 G G A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 C 12 12 12 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 C 4 4 4 C C B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n B 1 7 G 7 7 7 G G B . n B 1 8 G 8 8 8 G G B . n B 1 9 U 9 9 9 U U B . n B 1 10 C 10 10 10 C C B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n C 1 1 G 1 1 1 G G C . n C 1 2 G 2 2 2 G G C . n C 1 3 G 3 3 3 G G C . n C 1 4 C 4 4 4 C C C . n C 1 5 C 5 5 5 C C C . n C 1 6 C 6 6 6 C C C . n C 1 7 G 7 7 7 G G C . n C 1 8 G 8 8 8 G G C . n C 1 9 U 9 9 9 U U C . n C 1 10 C 10 10 10 C C C . n C 1 11 C 11 11 11 C C C . n C 1 12 C 12 12 12 C C C . n D 1 1 G 1 1 1 G G D . n D 1 2 G 2 2 2 G G D . n D 1 3 G 3 3 3 G G D . n D 1 4 C 4 4 4 C C D . n D 1 5 C 5 5 5 C C D . n D 1 6 C 6 6 6 C C D . n D 1 7 G 7 7 7 G G D . n D 1 8 G 8 8 8 G G D . n D 1 9 U 9 9 9 U U D . n D 1 10 C 10 10 10 C C D . n D 1 11 C 11 11 11 C C D . n D 1 12 C 12 12 12 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AG 1 101 1 AG AG A . F 2 AG 1 102 2 AG AG A . G 2 AG 1 101 3 AG AG C . H 2 AG 1 102 4 AG AG C . I 3 HOH 1 201 2 HOH HOH A . I 3 HOH 2 202 3 HOH HOH A . I 3 HOH 3 203 4 HOH HOH A . I 3 HOH 4 204 1 HOH HOH A . J 3 HOH 1 101 5 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7ECP _cell.details ? _cell.formula_units_Z ? _cell.length_a 88.968 _cell.length_a_esd ? _cell.length_b 88.968 _cell.length_b_esd ? _cell.length_c 33.326 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ECP _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ECP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'MOPS, MPD, spermine, lithium nitrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-22 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 16.957 _reflns.entry_id 7ECP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.910 _reflns.d_resolution_low 31.450 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 2968 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.688 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.952 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.110 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 10945 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.910 2.990 ? 4.470 ? ? ? ? 223 98.200 ? ? ? ? 0.204 ? ? ? ? ? ? ? ? 3.646 ? ? ? ? 0.236 ? ? 1 1 0.989 ? ? 2.990 3.070 ? 5.660 ? ? ? ? 212 99.500 ? ? ? ? 0.142 ? ? ? ? ? ? ? ? 3.670 ? ? ? ? 0.164 ? ? 2 1 0.992 ? ? 3.070 3.160 ? 6.260 ? ? ? ? 204 100.000 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 3.495 ? ? ? ? 0.134 ? ? 3 1 0.994 ? ? 3.160 3.260 ? 7.620 ? ? ? ? 205 99.500 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? 3.337 ? ? ? ? 0.115 ? ? 4 1 0.995 ? ? 3.260 3.360 ? 7.600 ? ? ? ? 182 98.900 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 3.357 ? ? ? ? 0.088 ? ? 5 1 0.997 ? ? 3.360 3.480 ? 7.470 ? ? ? ? 188 100.000 ? ? ? ? 0.126 ? ? ? ? ? ? ? ? 3.612 ? ? ? ? 0.146 ? ? 6 1 0.991 ? ? 3.480 3.610 ? 9.480 ? ? ? ? 186 100.000 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 3.489 ? ? ? ? 0.101 ? ? 7 1 0.994 ? ? 3.610 3.760 ? 9.900 ? ? ? ? 161 99.400 ? ? ? ? 0.087 ? ? ? ? ? ? ? ? 3.565 ? ? ? ? 0.099 ? ? 8 1 0.995 ? ? 3.760 3.930 ? 9.420 ? ? ? ? 172 100.000 ? ? ? ? 0.084 ? ? ? ? ? ? ? ? 3.709 ? ? ? ? 0.096 ? ? 9 1 0.996 ? ? 3.930 4.120 ? 10.980 ? ? ? ? 163 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 4.135 ? ? ? ? 0.111 ? ? 10 1 0.993 ? ? 4.120 4.340 ? 11.780 ? ? ? ? 154 100.000 ? ? ? ? 0.103 ? ? ? ? ? ? ? ? 3.955 ? ? ? ? 0.119 ? ? 11 1 0.989 ? ? 4.340 4.610 ? 12.640 ? ? ? ? 144 99.300 ? ? ? ? 0.107 ? ? ? ? ? ? ? ? 4.097 ? ? ? ? 0.125 ? ? 12 1 0.987 ? ? 4.610 4.920 ? 12.590 ? ? ? ? 138 99.300 ? ? ? ? 0.096 ? ? ? ? ? ? ? ? 3.899 ? ? ? ? 0.112 ? ? 13 1 0.987 ? ? 4.920 5.320 ? 14.390 ? ? ? ? 125 98.400 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.904 ? ? ? ? 0.084 ? ? 14 1 0.994 ? ? 5.320 5.830 ? 12.910 ? ? ? ? 121 99.200 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 3.942 ? ? ? ? 0.089 ? ? 15 1 0.995 ? ? 5.830 6.510 ? 12.420 ? ? ? ? 114 100.00 ? ? ? ? 0.089 ? ? ? ? ? ? ? ? 3.965 ? ? ? ? 0.104 ? ? 16 1 0.994 ? ? 6.510 7.520 ? 14.780 ? ? ? ? 90 98.900 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 3.800 ? ? ? ? 0.079 ? ? 17 1 0.992 ? ? 7.520 9.210 ? 14.590 ? ? ? ? 82 100.000 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 3.646 ? ? ? ? 0.071 ? ? 18 1 0.996 ? ? 9.210 13.030 ? 20.360 ? ? ? ? 67 95.700 ? ? ? ? 0.052 ? ? ? ? ? ? ? ? 3.433 ? ? ? ? 0.062 ? ? 19 1 0.996 ? ? 13.030 31.450 ? 20.440 ? ? ? ? 37 92.500 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 2.892 ? ? ? ? 0.047 ? ? 20 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 75.540 _refine.B_iso_mean 17.2673 _refine.B_iso_min 1.160 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7ECP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9100 _refine.ls_d_res_low 31.4500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 2911 _refine.ls_number_reflns_R_free 293 _refine.ls_number_reflns_R_work 2618 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.3900 _refine.ls_percent_reflns_R_free 10.0700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1608 _refine.ls_R_factor_R_free 0.2261 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1536 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 13.3500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.9100 _refine_hist.d_res_low 31.4500 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1017 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 48 _refine_hist.pdbx_B_iso_mean_ligand 31.45 _refine_hist.pdbx_B_iso_mean_solvent 9.65 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1008 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9100 3.6600 1408 . 144 1264 96.0000 . . . 0.2578 0.0000 0.1952 . . . . . . . 2 . . . 'X-RAY DIFFRACTION' 3.6700 31.4500 1503 . 149 1354 99.0000 . . . 0.2050 0.0000 0.1274 . . . . . . . 2 . . . # _struct.entry_id 7ECP _struct.title 'RNA duplex containing C-Ag-U' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ECP _struct_keywords.text 'Metal-mediated base pair, Silver, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7ECP _struct_ref.pdbx_db_accession 7ECP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7ECP A 1 ? 12 ? 7ECP 1 ? 12 ? 1 12 2 1 7ECP B 1 ? 12 ? 7ECP 1 ? 12 ? 1 12 3 1 7ECP C 1 ? 12 ? 7ECP 1 ? 12 ? 1 12 4 1 7ECP D 1 ? 12 ? 7ECP 1 ? 12 ? 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1480 ? 1 MORE -27 ? 1 'SSA (A^2)' 4320 ? 2 'ABSA (A^2)' 1480 ? 2 MORE -26 ? 2 'SSA (A^2)' 4330 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,I 2 1 C,D,G,H,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A C 4 N3 ? ? ? 1_555 F AG . AG ? ? A C 4 A AG 102 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc2 metalc ? ? A U 9 N3 ? ? ? 1_555 E AG . AG ? ? A U 9 A AG 101 1_555 ? ? ? ? ? ? ? 2.051 ? ? metalc3 metalc ? ? E AG . AG ? ? ? 1_555 B C 4 N3 ? ? A AG 101 B C 4 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc4 metalc ? ? F AG . AG ? ? ? 1_555 B U 9 N3 ? ? A AG 102 B U 9 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc5 metalc ? ? C C 4 N3 ? ? ? 1_555 G AG . AG ? ? C C 4 C AG 101 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc6 metalc ? ? C U 9 N3 ? ? ? 1_555 H AG . AG ? ? C U 9 C AG 102 1_555 ? ? ? ? ? ? ? 2.361 ? ? metalc7 metalc ? ? G AG . AG ? ? ? 1_555 D U 9 N3 ? ? C AG 101 D U 9 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc8 metalc ? ? H AG . AG ? ? ? 1_555 D C 4 N3 ? ? C AG 102 D C 4 1_555 ? ? ? ? ? ? ? 2.552 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 2 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 3 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 B U 9 O4 ? ? A C 4 B U 9 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 5 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 6 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 7 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 8 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 9 O4 ? ? ? 1_555 B C 4 N4 ? ? A U 9 B C 4 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 B C 5 O2 ? ? A U 9 B C 5 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog25 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 10 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 11 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 12 N3 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 12 O2 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 12 N4 ? ? C G 1 D C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 2 D C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 10 N3 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 10 O2 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 10 N4 ? ? C G 3 D C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C C 4 N4 ? ? ? 1_555 D U 9 O4 ? ? C C 4 D U 9 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog44 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 5 D G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 7 N1 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 7 O6 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 7 N2 ? ? C C 6 D G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 7 D C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C G 8 N1 ? ? ? 1_555 D C 5 N3 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 8 N2 ? ? ? 1_555 D C 5 O2 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 8 O6 ? ? ? 1_555 D C 5 N4 ? ? C G 8 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C U 9 O4 ? ? ? 1_555 D C 4 N4 ? ? C U 9 D C 4 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog57 hydrog ? ? C C 10 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C C 10 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 10 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 10 D G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 11 D G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 12 D G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A C 4 ? A C 4 ? 1_555 AG ? F AG . ? A AG 102 ? 1_555 N3 ? B U 9 ? B U 9 ? 1_555 153.8 ? 2 N3 ? A U 9 ? A U 9 ? 1_555 AG ? E AG . ? A AG 101 ? 1_555 N3 ? B C 4 ? B C 4 ? 1_555 151.7 ? 3 N3 ? C C 4 ? C C 4 ? 1_555 AG ? G AG . ? C AG 101 ? 1_555 N3 ? D U 9 ? D U 9 ? 1_555 143.0 ? 4 N3 ? C U 9 ? C U 9 ? 1_555 AG ? H AG . ? C AG 102 ? 1_555 N3 ? D C 4 ? D C 4 ? 1_555 161.2 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N3 _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C2 _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 O2 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.52 _pdbx_validate_rmsd_angle.angle_target_value 121.90 _pdbx_validate_rmsd_angle.angle_deviation -4.38 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_entry_details.entry_id 7ECP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 C OP3 O N N 2 C P P N N 3 C OP1 O N N 4 C OP2 O N N 5 C "O5'" O N N 6 C "C5'" C N N 7 C "C4'" C N R 8 C "O4'" O N N 9 C "C3'" C N S 10 C "O3'" O N N 11 C "C2'" C N R 12 C "O2'" O N N 13 C "C1'" C N R 14 C N1 N N N 15 C C2 C N N 16 C O2 O N N 17 C N3 N N N 18 C C4 C N N 19 C N4 N N N 20 C C5 C N N 21 C C6 C N N 22 C HOP3 H N N 23 C HOP2 H N N 24 C "H5'" H N N 25 C "H5''" H N N 26 C "H4'" H N N 27 C "H3'" H N N 28 C "HO3'" H N N 29 C "H2'" H N N 30 C "HO2'" H N N 31 C "H1'" H N N 32 C H41 H N N 33 C H42 H N N 34 C H5 H N N 35 C H6 H N N 36 G OP3 O N N 37 G P P N N 38 G OP1 O N N 39 G OP2 O N N 40 G "O5'" O N N 41 G "C5'" C N N 42 G "C4'" C N R 43 G "O4'" O N N 44 G "C3'" C N S 45 G "O3'" O N N 46 G "C2'" C N R 47 G "O2'" O N N 48 G "C1'" C N R 49 G N9 N Y N 50 G C8 C Y N 51 G N7 N Y N 52 G C5 C Y N 53 G C6 C N N 54 G O6 O N N 55 G N1 N N N 56 G C2 C N N 57 G N2 N N N 58 G N3 N N N 59 G C4 C Y N 60 G HOP3 H N N 61 G HOP2 H N N 62 G "H5'" H N N 63 G "H5''" H N N 64 G "H4'" H N N 65 G "H3'" H N N 66 G "HO3'" H N N 67 G "H2'" H N N 68 G "HO2'" H N N 69 G "H1'" H N N 70 G H8 H N N 71 G H1 H N N 72 G H21 H N N 73 G H22 H N N 74 HOH O O N N 75 HOH H1 H N N 76 HOH H2 H N N 77 U OP3 O N N 78 U P P N N 79 U OP1 O N N 80 U OP2 O N N 81 U "O5'" O N N 82 U "C5'" C N N 83 U "C4'" C N R 84 U "O4'" O N N 85 U "C3'" C N S 86 U "O3'" O N N 87 U "C2'" C N R 88 U "O2'" O N N 89 U "C1'" C N R 90 U N1 N N N 91 U C2 C N N 92 U O2 O N N 93 U N3 N N N 94 U C4 C N N 95 U O4 O N N 96 U C5 C N N 97 U C6 C N N 98 U HOP3 H N N 99 U HOP2 H N N 100 U "H5'" H N N 101 U "H5''" H N N 102 U "H4'" H N N 103 U "H3'" H N N 104 U "HO3'" H N N 105 U "H2'" H N N 106 U "HO2'" H N N 107 U "H1'" H N N 108 U H3 H N N 109 U H5 H N N 110 U H6 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C OP3 P sing N N 1 C OP3 HOP3 sing N N 2 C P OP1 doub N N 3 C P OP2 sing N N 4 C P "O5'" sing N N 5 C OP2 HOP2 sing N N 6 C "O5'" "C5'" sing N N 7 C "C5'" "C4'" sing N N 8 C "C5'" "H5'" sing N N 9 C "C5'" "H5''" sing N N 10 C "C4'" "O4'" sing N N 11 C "C4'" "C3'" sing N N 12 C "C4'" "H4'" sing N N 13 C "O4'" "C1'" sing N N 14 C "C3'" "O3'" sing N N 15 C "C3'" "C2'" sing N N 16 C "C3'" "H3'" sing N N 17 C "O3'" "HO3'" sing N N 18 C "C2'" "O2'" sing N N 19 C "C2'" "C1'" sing N N 20 C "C2'" "H2'" sing N N 21 C "O2'" "HO2'" sing N N 22 C "C1'" N1 sing N N 23 C "C1'" "H1'" sing N N 24 C N1 C2 sing N N 25 C N1 C6 sing N N 26 C C2 O2 doub N N 27 C C2 N3 sing N N 28 C N3 C4 doub N N 29 C C4 N4 sing N N 30 C C4 C5 sing N N 31 C N4 H41 sing N N 32 C N4 H42 sing N N 33 C C5 C6 doub N N 34 C C5 H5 sing N N 35 C C6 H6 sing N N 36 G OP3 P sing N N 37 G OP3 HOP3 sing N N 38 G P OP1 doub N N 39 G P OP2 sing N N 40 G P "O5'" sing N N 41 G OP2 HOP2 sing N N 42 G "O5'" "C5'" sing N N 43 G "C5'" "C4'" sing N N 44 G "C5'" "H5'" sing N N 45 G "C5'" "H5''" sing N N 46 G "C4'" "O4'" sing N N 47 G "C4'" "C3'" sing N N 48 G "C4'" "H4'" sing N N 49 G "O4'" "C1'" sing N N 50 G "C3'" "O3'" sing N N 51 G "C3'" "C2'" sing N N 52 G "C3'" "H3'" sing N N 53 G "O3'" "HO3'" sing N N 54 G "C2'" "O2'" sing N N 55 G "C2'" "C1'" sing N N 56 G "C2'" "H2'" sing N N 57 G "O2'" "HO2'" sing N N 58 G "C1'" N9 sing N N 59 G "C1'" "H1'" sing N N 60 G N9 C8 sing Y N 61 G N9 C4 sing Y N 62 G C8 N7 doub Y N 63 G C8 H8 sing N N 64 G N7 C5 sing Y N 65 G C5 C6 sing N N 66 G C5 C4 doub Y N 67 G C6 O6 doub N N 68 G C6 N1 sing N N 69 G N1 C2 sing N N 70 G N1 H1 sing N N 71 G C2 N2 sing N N 72 G C2 N3 doub N N 73 G N2 H21 sing N N 74 G N2 H22 sing N N 75 G N3 C4 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 U OP3 P sing N N 79 U OP3 HOP3 sing N N 80 U P OP1 doub N N 81 U P OP2 sing N N 82 U P "O5'" sing N N 83 U OP2 HOP2 sing N N 84 U "O5'" "C5'" sing N N 85 U "C5'" "C4'" sing N N 86 U "C5'" "H5'" sing N N 87 U "C5'" "H5''" sing N N 88 U "C4'" "O4'" sing N N 89 U "C4'" "C3'" sing N N 90 U "C4'" "H4'" sing N N 91 U "O4'" "C1'" sing N N 92 U "C3'" "O3'" sing N N 93 U "C3'" "C2'" sing N N 94 U "C3'" "H3'" sing N N 95 U "O3'" "HO3'" sing N N 96 U "C2'" "O2'" sing N N 97 U "C2'" "C1'" sing N N 98 U "C2'" "H2'" sing N N 99 U "O2'" "HO2'" sing N N 100 U "C1'" N1 sing N N 101 U "C1'" "H1'" sing N N 102 U N1 C2 sing N N 103 U N1 C6 sing N N 104 U C2 O2 doub N N 105 U C2 N3 sing N N 106 U N3 C4 sing N N 107 U N3 H3 sing N N 108 U C4 O4 doub N N 109 U C4 C5 sing N N 110 U C5 C6 doub N N 111 U C5 H5 sing N N 112 U C6 H6 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7ECP 'double helix' 7ECP 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -1.138 -0.075 0.392 7.260 -5.185 6.678 1 A_G1:C12_B A 1 ? B 12 ? 19 1 1 A G 2 1_555 B C 11 1_555 -0.155 -0.362 -0.035 5.496 -4.729 -1.324 2 A_G2:C11_B A 2 ? B 11 ? 19 1 1 A G 3 1_555 B C 10 1_555 -0.771 -0.097 -0.298 -10.299 -10.626 4.571 3 A_G3:C10_B A 3 ? B 10 ? 19 1 1 A C 4 1_555 B U 9 1_555 0.566 -0.453 0.065 -11.550 -9.499 -21.923 4 A_C4:U9_B A 4 ? B 9 ? ? ? 1 A C 5 1_555 B G 8 1_555 0.344 -0.315 -0.185 7.813 -17.639 2.628 5 A_C5:G8_B A 5 ? B 8 ? 19 1 1 A C 6 1_555 B G 7 1_555 0.256 -0.326 -0.212 3.969 -10.564 -5.418 6 A_C6:G7_B A 6 ? B 7 ? 19 1 1 A G 7 1_555 B C 6 1_555 -0.546 -0.198 0.412 2.486 -7.884 -1.791 7 A_G7:C6_B A 7 ? B 6 ? 19 1 1 A G 8 1_555 B C 5 1_555 0.072 -0.204 -0.525 -13.176 -28.618 4.840 8 A_G8:C5_B A 8 ? B 5 ? 19 1 1 A U 9 1_555 B C 4 1_555 -0.103 -0.767 -0.414 8.783 -14.638 -25.656 9 A_U9:C4_B A 9 ? B 4 ? ? ? 1 A C 10 1_555 B G 3 1_555 0.750 -0.165 -0.173 12.978 -15.857 0.650 10 A_C10:G3_B A 10 ? B 3 ? 19 1 1 A C 11 1_555 B G 2 1_555 0.069 -0.229 0.161 -2.472 -4.154 -1.607 11 A_C11:G2_B A 11 ? B 2 ? 19 1 1 A C 12 1_555 B G 1 1_555 0.681 -0.363 -0.075 0.163 -11.509 0.075 12 A_C12:G1_B A 12 ? B 1 ? 19 1 1 C G 1 1_555 D C 12 1_555 -0.284 -0.208 -0.180 -7.973 -4.307 -1.709 13 C_G1:C12_D C 1 ? D 12 ? 19 1 1 C G 2 1_555 D C 11 1_555 -0.516 -0.099 -0.076 2.862 -8.653 1.839 14 C_G2:C11_D C 2 ? D 11 ? 19 1 1 C G 3 1_555 D C 10 1_555 -0.413 -0.210 0.029 -6.031 -18.706 3.201 15 C_G3:C10_D C 3 ? D 10 ? 19 1 1 C C 4 1_555 D U 9 1_555 0.350 -0.798 0.044 16.206 -15.854 -15.544 16 C_C4:U9_D C 4 ? D 9 ? ? ? 1 C C 5 1_555 D G 8 1_555 -0.350 -0.214 -0.455 10.215 -24.120 2.415 17 C_C5:G8_D C 5 ? D 8 ? 19 1 1 C C 6 1_555 D G 7 1_555 0.649 -0.118 0.492 -8.709 -15.906 -1.128 18 C_C6:G7_D C 6 ? D 7 ? 19 1 1 C G 7 1_555 D C 6 1_555 0.134 -0.414 0.065 -3.404 -9.825 -3.644 19 C_G7:C6_D C 7 ? D 6 ? 19 1 1 C G 8 1_555 D C 5 1_555 -0.102 -0.291 0.162 -6.843 -19.744 0.040 20 C_G8:C5_D C 8 ? D 5 ? 19 1 1 C U 9 1_555 D C 4 1_555 0.006 0.027 -0.506 -2.155 -19.069 -22.503 21 C_U9:C4_D C 9 ? D 4 ? ? ? 1 C C 10 1_555 D G 3 1_555 0.524 -0.067 0.493 3.198 -9.108 2.436 22 C_C10:G3_D C 10 ? D 3 ? 19 1 1 C C 11 1_555 D G 2 1_555 0.625 -0.179 0.155 7.983 -21.803 2.800 23 C_C11:G2_D C 11 ? D 2 ? 19 1 1 C C 12 1_555 D G 1 1_555 0.385 -0.269 0.322 4.549 -14.385 -5.443 24 C_C12:G1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A G 2 1_555 B C 11 1_555 -1.098 -1.761 3.081 -0.943 7.128 38.542 -3.394 1.536 2.750 10.685 1.414 39.181 1 AA_G1G2:C11C12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A G 2 1_555 B C 11 1_555 A G 3 1_555 B C 10 1_555 0.518 -1.812 3.605 2.442 10.099 28.587 -5.521 -0.489 2.848 19.650 -4.751 30.380 2 AA_G2G3:C10C11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A G 3 1_555 B C 10 1_555 A C 4 1_555 B U 9 1_555 -1.529 -1.415 3.226 -2.783 3.355 41.097 -2.360 1.873 3.198 4.762 3.951 41.318 3 AA_G3C4:U9C10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A C 4 1_555 B U 9 1_555 A C 5 1_555 B G 8 1_555 1.643 -1.182 2.632 5.007 -1.341 30.624 -1.988 -2.249 2.905 -2.517 -9.396 31.050 4 AA_C4C5:G8U9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A C 5 1_555 B G 8 1_555 A C 6 1_555 B G 7 1_555 -0.640 -1.787 3.251 -0.603 12.587 31.264 -4.926 1.017 2.385 22.257 1.066 33.650 5 AA_C5C6:G7G8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A C 6 1_555 B G 7 1_555 A G 7 1_555 B C 6 1_555 0.236 -1.606 3.094 -4.034 14.365 26.089 -5.536 -1.139 1.912 29.000 8.143 29.990 6 AA_C6G7:C6G7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A G 7 1_555 B C 6 1_555 A G 8 1_555 B C 5 1_555 0.578 -1.428 3.849 8.939 10.689 38.514 -3.388 0.295 3.398 15.596 -13.043 40.867 7 AA_G7G8:C5C6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A G 8 1_555 B C 5 1_555 A U 9 1_555 B C 4 1_555 -1.886 -0.898 2.558 -4.667 2.318 30.560 -2.045 2.797 2.735 4.358 8.774 30.990 8 AA_G8U9:C4C5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A U 9 1_555 B C 4 1_555 A C 10 1_555 B G 3 1_555 2.011 -1.318 3.087 3.426 5.174 39.418 -2.496 -2.575 3.054 7.613 -5.042 39.884 9 AA_U9C10:G3C4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A C 10 1_555 B G 3 1_555 A C 11 1_555 B G 2 1_555 -0.430 -1.617 3.494 -2.015 11.610 31.466 -4.687 0.417 2.762 20.529 3.562 33.548 10 AA_C10C11:G2G3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A C 11 1_555 B G 2 1_555 A C 12 1_555 B G 1 1_555 0.374 -1.087 3.289 6.374 2.464 34.128 -2.196 0.350 3.220 4.147 -10.728 34.786 11 AA_C11C12:G1G2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 C G 1 1_555 D C 12 1_555 C G 2 1_555 D C 11 1_555 -0.004 -1.848 3.100 -0.199 3.964 28.995 -4.440 -0.032 2.827 7.870 0.396 29.259 12 CC_G1G2:C11C12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C G 2 1_555 D C 11 1_555 C G 3 1_555 D C 10 1_555 0.608 -1.534 3.330 0.185 11.968 33.202 -4.208 -0.979 2.640 20.147 -0.312 35.236 13 CC_G2G3:C10C11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C G 3 1_555 D C 10 1_555 C C 4 1_555 D U 9 1_555 -1.395 -1.256 2.621 -0.451 -3.668 35.591 -1.610 2.217 2.750 -5.981 0.735 35.777 14 CC_G3C4:U9C10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C C 4 1_555 D U 9 1_555 C C 5 1_555 D G 8 1_555 1.334 -1.339 3.337 7.423 9.752 30.909 -3.994 -1.079 3.020 17.460 -13.291 33.195 15 CC_C4C5:G8U9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C C 5 1_555 D G 8 1_555 C C 6 1_555 D G 7 1_555 -0.196 -1.298 3.776 -5.501 12.708 38.508 -3.400 -0.386 3.206 18.553 8.031 40.833 16 CC_C5C6:G7G8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C C 6 1_555 D G 7 1_555 C G 7 1_555 D C 6 1_555 -0.094 -1.671 2.729 3.287 12.321 30.014 -4.567 0.590 1.894 22.554 -6.016 32.554 17 CC_C6G7:C6G7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C G 7 1_555 D C 6 1_555 C G 8 1_555 D C 5 1_555 0.313 -1.754 3.238 0.117 7.133 30.806 -4.452 -0.554 2.773 13.206 -0.217 31.601 18 CC_G7G8:C5C6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C G 8 1_555 D C 5 1_555 C U 9 1_555 D C 4 1_555 -1.511 -1.485 2.967 1.847 4.450 34.960 -3.022 2.730 2.683 7.365 -3.057 35.280 19 CC_G8U9:C4C5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C U 9 1_555 D C 4 1_555 C C 10 1_555 D G 3 1_555 1.297 -1.132 3.116 -5.377 6.255 33.905 -2.737 -2.894 2.641 10.534 9.054 34.865 20 CC_U9C10:G3C4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C C 10 1_555 D G 3 1_555 C C 11 1_555 D G 2 1_555 -0.004 -1.603 3.129 3.892 1.276 31.487 -3.152 0.684 3.041 2.339 -7.133 31.745 21 CC_C10C11:G2G3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C C 11 1_555 D G 2 1_555 C C 12 1_555 D G 1 1_555 0.014 -1.743 3.209 2.461 6.071 32.352 -4.032 0.366 2.837 10.758 -4.362 32.992 22 CC_C11C12:G1G2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 24245037 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id AG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id AG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 7ECP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011240 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011240 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030007 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG C N O P # loop_