data_7EEO # _entry.id 7EEO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EEO pdb_00007eeo 10.2210/pdb7eeo/pdb WWPDB D_1300021306 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7EEO _pdbx_database_status.recvd_initial_deposition_date 2021-03-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 0000-0002-5682-3685 'Sekiguchi, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 0000-0002-5682-3685 primary 'Sekiguchi, S.' 2 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 107.220 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7EEO _cell.details ? _cell.formula_units_Z ? _cell.length_a 24.776 _cell.length_a_esd ? _cell.length_b 116.432 _cell.length_b_esd ? _cell.length_c 27.904 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA/RNA (27-MER)' 8847.591 2 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 3 ? ? ? ? 3 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polydeoxyribonucleotide/polyribonucleotide hybrid' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(U2M)(G2M)(OMC)(OMU)(OMC)(OMC)(OMU)(DA)(DG)(OMU)(A2M)(OMC)GAGAGGACCGGAGUG' _entity_poly.pdbx_seq_one_letter_code_can XXCUCCUAGUACGAGAGGACCGGAGUG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U2M n 1 2 G2M n 1 3 OMC n 1 4 OMU n 1 5 OMC n 1 6 OMC n 1 7 OMU n 1 8 DA n 1 9 DG n 1 10 OMU n 1 11 A2M n 1 12 OMC n 1 13 G n 1 14 A n 1 15 G n 1 16 A n 1 17 G n 1 18 G n 1 19 A n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 A n 1 25 G n 1 26 U n 1 27 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7EEO _struct_ref.pdbx_db_accession 7EEO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7EEO A 1 ? 27 ? 7EEO 1 ? 27 ? 1 27 2 1 7EEO B 1 ? 27 ? 7EEO 1 ? 27 ? 1 27 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A2M 'RNA linking' n ;2'-O-methyladenosine 5'-(dihydrogen phosphate) ; ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G2M non-polymer . "2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(1-methyl-1-phosphonoethyl)phosphoryl]oxy}phosphoryl]guanosine" ? 'C13 H22 N5 O12 P3' 533.261 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U2M 'L-peptide linking' . '(2S)-2-amino-7-sulfanylheptanoic acid' ? 'C7 H15 N O2 S' 177.264 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EEO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium chloride, MPD, hexammine cobalt, lithium chloride' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-06-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.60496 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.60496 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 59.230 _reflns.entry_id 7EEO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 29.108 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7521 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 90.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.565 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.330 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.452 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.077 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.994 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.700 2.770 ? 2.360 ? 868 651 ? 555 85.300 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? 1.564 ? ? ? ? 0.373 ? ? 1 1 0.896 ? ? 2.770 2.850 ? 2.820 ? 862 569 ? 525 92.300 ? ? ? ? 0.200 ? ? ? ? ? ? ? ? 1.642 ? ? ? ? 0.279 ? ? 2 1 0.945 ? ? 2.850 2.930 ? 3.390 ? 768 531 ? 490 92.300 ? ? ? ? 0.167 ? ? ? ? ? ? ? ? 1.567 ? ? ? ? 0.233 ? ? 3 1 0.940 ? ? 2.930 3.020 ? 4.460 ? 859 581 ? 541 93.100 ? ? ? ? 0.154 ? ? ? ? ? ? ? ? 1.588 ? ? ? ? 0.216 ? ? 4 1 0.952 ? ? 3.020 3.120 ? 6.310 ? 887 586 ? 541 92.300 ? ? ? ? 0.104 ? ? ? ? ? ? ? ? 1.640 ? ? ? ? 0.145 ? ? 5 1 0.980 ? ? 3.120 3.230 ? 6.740 ? 697 474 ? 438 92.400 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 1.591 ? ? ? ? 0.126 ? ? 6 1 0.977 ? ? 3.230 3.350 ? 7.770 ? 722 506 ? 463 91.500 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 1.559 ? ? ? ? 0.097 ? ? 7 1 0.991 ? ? 3.350 3.490 ? 8.480 ? 755 530 ? 480 90.600 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 1.573 ? ? ? ? 0.084 ? ? 8 1 0.994 ? ? 3.490 3.640 ? 9.440 ? 587 428 ? 380 88.800 ? ? ? ? 0.051 ? ? ? ? ? ? ? ? 1.545 ? ? ? ? 0.073 ? ? 9 1 0.993 ? ? 3.640 3.820 ? 10.190 ? 665 450 ? 414 92.000 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 1.606 ? ? ? ? 0.078 ? ? 10 1 0.989 ? ? 3.820 4.030 ? 11.180 ? 584 425 ? 383 90.100 ? ? ? ? 0.055 ? ? ? ? ? ? ? ? 1.525 ? ? ? ? 0.077 ? ? 11 1 0.989 ? ? 4.030 4.270 ? 11.470 ? 524 402 ? 351 87.300 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 1.493 ? ? ? ? 0.094 ? ? 12 1 0.980 ? ? 4.270 4.570 ? 11.960 ? 482 377 ? 327 86.700 ? ? ? ? 0.057 ? ? ? ? ? ? ? ? 1.474 ? ? ? ? 0.080 ? ? 13 1 0.985 ? ? 4.570 4.930 ? 11.750 ? 430 365 ? 317 86.800 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? 1.356 ? ? ? ? 0.092 ? ? 14 1 0.977 ? ? 4.930 5.400 ? 13.550 ? 461 307 ? 290 94.500 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 1.590 ? ? ? ? 0.061 ? ? 15 1 0.992 ? ? 5.400 6.040 ? 13.960 ? 422 289 ? 268 92.700 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 1.575 ? ? ? ? 0.068 ? ? 16 1 0.990 ? ? 6.040 6.970 ? 14.350 ? 389 266 ? 239 89.800 ? ? ? ? 0.039 ? ? ? ? ? ? ? ? 1.628 ? ? ? ? 0.055 ? ? 17 1 0.992 ? ? 6.970 8.540 ? 14.420 ? 300 221 ? 195 88.200 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 1.538 ? ? ? ? 0.051 ? ? 18 1 0.993 ? ? 8.540 12.080 ? 14.960 ? 228 155 ? 142 91.600 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 1.606 ? ? ? ? 0.046 ? ? 19 1 0.995 ? ? 12.080 29.108 ? 14.560 ? 114 96 ? 75 78.100 ? ? ? ? 0.032 ? ? ? ? ? ? ? ? 1.520 ? ? ? ? 0.045 ? ? 20 1 0.993 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 121.120 _refine.B_iso_mean 49.5215 _refine.B_iso_min 20.950 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'The Sf file contains friedel pairs under F_plus and F_minus columns.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7EEO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7010 _refine.ls_d_res_low 29.1080 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7521 _refine.ls_number_reflns_R_free 756 _refine.ls_number_reflns_R_work 6765 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.0100 _refine.ls_percent_reflns_R_free 10.0500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2128 _refine.ls_R_factor_R_free 0.2648 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2068 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.470 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1Q9A _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 35.2700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7010 _refine_hist.d_res_low 29.1080 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 1052 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 47 _refine_hist.pdbx_B_iso_mean_ligand 62.03 _refine_hist.pdbx_B_iso_mean_solvent 46.46 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1023 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1161 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.531 ? 1814 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.063 ? 216 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 47 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.583 ? 445 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7010 2.9091 . . 147 1325 92.0000 . . . 0.4329 0.0000 0.3563 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9091 3.2015 . . 162 1403 94.0000 . . . 0.3046 0.0000 0.2451 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2015 3.6640 . . 151 1372 94.0000 . . . 0.2504 0.0000 0.1733 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6640 4.6133 . . 144 1329 89.0000 . . . 0.2097 0.0000 0.1777 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6133 29.1080 . . 152 1336 91.0000 . . . 0.2614 0.0000 0.2053 . . . . . . . . . . . # _struct.entry_id 7EEO _struct.title ;Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EEO _struct_keywords.text 'Bulged-G motif, RNA, DNA-RNA HYBRID' _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A OMC 3 "O3'" ? ? ? 1_555 A OMU 4 P ? ? A OMC 3 A OMU 4 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale both ? A OMU 4 "O3'" ? ? ? 1_555 A OMC 5 P ? ? A OMU 4 A OMC 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale3 covale both ? A OMC 5 "O3'" ? ? ? 1_555 A OMC 6 P ? ? A OMC 5 A OMC 6 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale4 covale both ? A OMC 6 "O3'" ? ? ? 1_555 A OMU 7 P ? ? A OMC 6 A OMU 7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale5 covale both ? A OMU 7 "O3'" ? ? ? 1_555 A DA 8 P ? ? A OMU 7 A DA 8 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale6 covale both ? A DG 9 "O3'" ? ? ? 1_555 A OMU 10 P ? ? A DG 9 A OMU 10 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale7 covale both ? A OMU 10 "O3'" ? ? ? 1_555 A A2M 11 P ? ? A OMU 10 A A2M 11 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale8 covale one ? A A2M 11 "O3'" ? ? ? 1_555 A OMC 12 P ? ? A A2M 11 A OMC 12 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale9 covale both ? A OMC 12 "O3'" ? ? ? 1_555 A G 13 P ? ? A OMC 12 A G 13 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale10 covale both ? B OMU 4 "O3'" ? ? ? 1_555 B OMC 5 P ? ? B OMU 4 B OMC 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale11 covale both ? B OMC 5 "O3'" ? ? ? 1_555 B OMC 6 P ? ? B OMC 5 B OMC 6 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale12 covale both ? B OMC 6 "O3'" ? ? ? 1_555 B OMU 7 P ? ? B OMC 6 B OMU 7 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale13 covale both ? B OMU 7 "O3'" ? ? ? 1_555 B DA 8 P ? ? B OMU 7 B DA 8 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale14 covale both ? B DG 9 "O3'" ? ? ? 1_555 B OMU 10 P ? ? B DG 9 B OMU 10 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale15 covale both ? B OMU 10 "O3'" ? ? ? 1_555 B A2M 11 P ? ? B OMU 10 B A2M 11 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale16 covale one ? B A2M 11 "O3'" ? ? ? 1_555 B OMC 12 P ? ? B A2M 11 B OMC 12 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale17 covale both ? B OMC 12 "O3'" ? ? ? 1_555 B G 13 P ? ? B OMC 12 B G 13 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? A OMC 3 O2 ? ? ? 1_555 A G 25 N2 ? ? A OMC 3 A G 25 1_555 ? ? ? ? ? ? 'OMC-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A OMU 4 N3 ? ? ? 1_555 A A 24 N1 ? ? A OMU 4 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A OMU 4 O4 ? ? ? 1_555 A A 24 N6 ? ? A OMU 4 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A OMC 5 N3 ? ? ? 1_555 A G 23 N1 ? ? A OMC 5 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A OMC 5 N4 ? ? ? 1_555 A G 23 O6 ? ? A OMC 5 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A OMC 5 O2 ? ? ? 1_555 A G 23 N2 ? ? A OMC 5 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A OMC 6 N3 ? ? ? 1_555 A G 22 N1 ? ? A OMC 6 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A OMC 6 N4 ? ? ? 1_555 A G 22 O6 ? ? A OMC 6 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A OMC 6 O2 ? ? ? 1_555 A G 22 N2 ? ? A OMC 6 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A OMU 7 O2 ? ? ? 1_555 A C 21 N4 ? ? A OMU 7 A C 21 1_555 ? ? ? ? ? ? 'OMU-C MISPAIR' ? ? ? hydrog11 hydrog ? ? A OMU 10 N3 ? ? ? 1_555 A A 19 N7 ? ? A OMU 10 A A 19 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog12 hydrog ? ? A OMU 10 O2 ? ? ? 1_555 A A 19 N6 ? ? A OMU 10 A A 19 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog13 hydrog ? ? A A2M 11 N6 ? ? ? 1_555 A G 18 N3 ? ? A A2M 11 A G 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A A2M 11 N7 ? ? ? 1_555 A G 18 N2 ? ? A A2M 11 A G 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A OMC 12 N3 ? ? ? 1_555 A G 17 N1 ? ? A OMC 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A OMC 12 N4 ? ? ? 1_555 A G 17 O6 ? ? A OMC 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A OMC 12 O2 ? ? ? 1_555 A G 17 N2 ? ? A OMC 12 A G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 16 N7 ? ? A G 13 A A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog19 hydrog ? ? B OMU 4 N3 ? ? ? 1_555 B A 24 N1 ? ? B OMU 4 B A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B OMU 4 O4 ? ? ? 1_555 B A 24 N6 ? ? B OMU 4 B A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B OMC 5 N3 ? ? ? 1_555 B G 23 N1 ? ? B OMC 5 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B OMC 5 N4 ? ? ? 1_555 B G 23 O6 ? ? B OMC 5 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B OMC 5 O2 ? ? ? 1_555 B G 23 N2 ? ? B OMC 5 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B OMC 6 N3 ? ? ? 1_555 B G 22 N1 ? ? B OMC 6 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B OMC 6 N4 ? ? ? 1_555 B G 22 O6 ? ? B OMC 6 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B OMC 6 O2 ? ? ? 1_555 B G 22 N2 ? ? B OMC 6 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B OMU 7 O2 ? ? ? 1_555 B C 21 N4 ? ? B OMU 7 B C 21 1_555 ? ? ? ? ? ? 'OMU-C MISPAIR' ? ? ? hydrog28 hydrog ? ? B OMU 10 N3 ? ? ? 1_555 B A 19 N7 ? ? B OMU 10 B A 19 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? B OMU 10 O2 ? ? ? 1_555 B A 19 N6 ? ? B OMU 10 B A 19 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog30 hydrog ? ? B A2M 11 N6 ? ? ? 1_555 B G 18 N3 ? ? B A2M 11 B G 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? B A2M 11 N7 ? ? ? 1_555 B G 18 N2 ? ? B A2M 11 B G 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog32 hydrog ? ? B OMC 12 N3 ? ? ? 1_555 B G 17 N1 ? ? B OMC 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B OMC 12 N4 ? ? ? 1_555 B G 17 O6 ? ? B OMC 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B OMC 12 O2 ? ? ? 1_555 B G 17 N2 ? ? B OMC 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 13 N2 ? ? ? 1_555 B A 16 N7 ? ? B G 13 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog36 hydrog ? ? B G 13 N3 ? ? ? 1_555 B A 16 N6 ? ? B G 13 B A 16 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7EEO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.040362 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012511 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.037519 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U2M 1 1 ? ? ? A . n A 1 2 G2M 2 2 ? ? ? A . n A 1 3 OMC 3 3 3 OMC C2M A . n A 1 4 OMU 4 4 4 OMU U2M A . n A 1 5 OMC 5 5 5 OMC C2M A . n A 1 6 OMC 6 6 6 OMC C2M A . n A 1 7 OMU 7 7 7 OMU U2M A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 OMU 10 10 10 OMU U2M A . n A 1 11 A2M 11 11 11 A2M A2M A . n A 1 12 OMC 12 12 12 OMC C2M A . n A 1 13 G 13 13 13 G G A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 G 25 25 25 G G A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 ? ? ? A . n B 1 1 U2M 1 1 ? ? ? B . n B 1 2 G2M 2 2 ? ? ? B . n B 1 3 OMC 3 3 ? ? ? B . n B 1 4 OMU 4 4 4 OMU U2M B . n B 1 5 OMC 5 5 5 OMC C2M B . n B 1 6 OMC 6 6 6 OMC C2M B . n B 1 7 OMU 7 7 7 OMU U2M B . n B 1 8 DA 8 8 8 DA DA B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 OMU 10 10 10 OMU U2M B . n B 1 11 A2M 11 11 11 A2M A2M B . n B 1 12 OMC 12 12 12 OMC C2M B . n B 1 13 G 13 13 13 G G B . n B 1 14 A 14 14 14 A A B . n B 1 15 G 15 15 15 G G B . n B 1 16 A 16 16 16 A A B . n B 1 17 G 17 17 17 G G B . n B 1 18 G 18 18 18 G G B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 C 21 21 21 C C B . n B 1 22 G 22 22 22 G G B . n B 1 23 G 23 23 23 G G B . n B 1 24 A 24 24 24 A A B . n B 1 25 G 25 25 25 G G B . n B 1 26 U 26 26 26 U U B . n B 1 27 G 27 27 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NCO 1 101 51 NCO NCO A . D 2 NCO 1 102 53 NCO NCO A . E 2 NCO 1 101 55 NCO NCO B . F 3 HOH 1 201 8 HOH HOH A . F 3 HOH 2 202 1 HOH HOH A . F 3 HOH 3 203 2 HOH HOH A . F 3 HOH 4 204 3 HOH HOH A . F 3 HOH 5 205 7 HOH HOH A . G 3 HOH 1 201 6 HOH HOH B . G 3 HOH 2 202 4 HOH HOH B . G 3 HOH 3 203 9 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,F 2 1 B,E,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4050 ? 1 MORE 15 ? 1 'SSA (A^2)' 3840 ? 2 'ABSA (A^2)' 3510 ? 2 MORE 17 ? 2 'SSA (A^2)' 3600 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-23 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7EEO _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 9 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 9 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.29 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.99 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U2M 1 ? A U2M 1 2 1 Y 1 A G2M 2 ? A G2M 2 3 1 Y 1 A G 27 ? A G 27 4 1 Y 1 B U2M 1 ? B U2M 1 5 1 Y 1 B G2M 2 ? B G2M 2 6 1 Y 1 B OMC 3 ? B OMC 3 7 1 Y 1 B G 27 ? B G 27 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A2M P P N N 38 A2M OP1 O N N 39 A2M OP3 O N N 40 A2M "O5'" O N N 41 A2M "C5'" C N N 42 A2M "C4'" C N R 43 A2M "O4'" O N N 44 A2M "C3'" C N R 45 A2M "O3'" O N N 46 A2M "C2'" C N R 47 A2M "O2'" O N N 48 A2M "C1'" C N R 49 A2M "CM'" C N N 50 A2M N9 N Y N 51 A2M C8 C Y N 52 A2M N7 N Y N 53 A2M C5 C Y N 54 A2M C6 C Y N 55 A2M N6 N N N 56 A2M N1 N Y N 57 A2M C2 C Y N 58 A2M N3 N Y N 59 A2M C4 C Y N 60 A2M HOP3 H N N 61 A2M "H5'" H N N 62 A2M "H5''" H N N 63 A2M "H4'" H N N 64 A2M "H3'" H N N 65 A2M "HO3'" H N N 66 A2M "H2'" H N N 67 A2M "H1'" H N N 68 A2M "HM'1" H N N 69 A2M "HM'2" H N N 70 A2M "HM'3" H N N 71 A2M H8 H N N 72 A2M H61 H N N 73 A2M H62 H N N 74 A2M H2 H N N 75 A2M OP2 O N N 76 A2M HOP2 H N N 77 C OP3 O N N 78 C P P N N 79 C OP1 O N N 80 C OP2 O N N 81 C "O5'" O N N 82 C "C5'" C N N 83 C "C4'" C N R 84 C "O4'" O N N 85 C "C3'" C N S 86 C "O3'" O N N 87 C "C2'" C N R 88 C "O2'" O N N 89 C "C1'" C N R 90 C N1 N N N 91 C C2 C N N 92 C O2 O N N 93 C N3 N N N 94 C C4 C N N 95 C N4 N N N 96 C C5 C N N 97 C C6 C N N 98 C HOP3 H N N 99 C HOP2 H N N 100 C "H5'" H N N 101 C "H5''" H N N 102 C "H4'" H N N 103 C "H3'" H N N 104 C "HO3'" H N N 105 C "H2'" H N N 106 C "HO2'" H N N 107 C "H1'" H N N 108 C H41 H N N 109 C H42 H N N 110 C H5 H N N 111 C H6 H N N 112 DA OP3 O N N 113 DA P P N N 114 DA OP1 O N N 115 DA OP2 O N N 116 DA "O5'" O N N 117 DA "C5'" C N N 118 DA "C4'" C N R 119 DA "O4'" O N N 120 DA "C3'" C N S 121 DA "O3'" O N N 122 DA "C2'" C N N 123 DA "C1'" C N R 124 DA N9 N Y N 125 DA C8 C Y N 126 DA N7 N Y N 127 DA C5 C Y N 128 DA C6 C Y N 129 DA N6 N N N 130 DA N1 N Y N 131 DA C2 C Y N 132 DA N3 N Y N 133 DA C4 C Y N 134 DA HOP3 H N N 135 DA HOP2 H N N 136 DA "H5'" H N N 137 DA "H5''" H N N 138 DA "H4'" H N N 139 DA "H3'" H N N 140 DA "HO3'" H N N 141 DA "H2'" H N N 142 DA "H2''" H N N 143 DA "H1'" H N N 144 DA H8 H N N 145 DA H61 H N N 146 DA H62 H N N 147 DA H2 H N N 148 DG OP3 O N N 149 DG P P N N 150 DG OP1 O N N 151 DG OP2 O N N 152 DG "O5'" O N N 153 DG "C5'" C N N 154 DG "C4'" C N R 155 DG "O4'" O N N 156 DG "C3'" C N S 157 DG "O3'" O N N 158 DG "C2'" C N N 159 DG "C1'" C N R 160 DG N9 N Y N 161 DG C8 C Y N 162 DG N7 N Y N 163 DG C5 C Y N 164 DG C6 C N N 165 DG O6 O N N 166 DG N1 N N N 167 DG C2 C N N 168 DG N2 N N N 169 DG N3 N N N 170 DG C4 C Y N 171 DG HOP3 H N N 172 DG HOP2 H N N 173 DG "H5'" H N N 174 DG "H5''" H N N 175 DG "H4'" H N N 176 DG "H3'" H N N 177 DG "HO3'" H N N 178 DG "H2'" H N N 179 DG "H2''" H N N 180 DG "H1'" H N N 181 DG H8 H N N 182 DG H1 H N N 183 DG H21 H N N 184 DG H22 H N N 185 G OP3 O N N 186 G P P N N 187 G OP1 O N N 188 G OP2 O N N 189 G "O5'" O N N 190 G "C5'" C N N 191 G "C4'" C N R 192 G "O4'" O N N 193 G "C3'" C N S 194 G "O3'" O N N 195 G "C2'" C N R 196 G "O2'" O N N 197 G "C1'" C N R 198 G N9 N Y N 199 G C8 C Y N 200 G N7 N Y N 201 G C5 C Y N 202 G C6 C N N 203 G O6 O N N 204 G N1 N N N 205 G C2 C N N 206 G N2 N N N 207 G N3 N N N 208 G C4 C Y N 209 G HOP3 H N N 210 G HOP2 H N N 211 G "H5'" H N N 212 G "H5''" H N N 213 G "H4'" H N N 214 G "H3'" H N N 215 G "HO3'" H N N 216 G "H2'" H N N 217 G "HO2'" H N N 218 G "H1'" H N N 219 G H8 H N N 220 G H1 H N N 221 G H21 H N N 222 G H22 H N N 223 G2M N1 N N N 224 G2M C2 C N N 225 G2M N2 N N N 226 G2M N3 N N N 227 G2M C4 C Y N 228 G2M C5 C Y N 229 G2M C6 C N N 230 G2M O6 O N N 231 G2M N7 N Y N 232 G2M C8 C Y N 233 G2M N9 N Y N 234 G2M PA P N N 235 G2M PB P N N 236 G2M PG P N N 237 G2M "C1'" C N R 238 G2M O1A O N N 239 G2M O1B O N N 240 G2M O1G O N N 241 G2M "C2'" C N N 242 G2M O2A O N N 243 G2M O2B O N N 244 G2M O2G O N N 245 G2M "C3'" C N S 246 G2M "O3'" O N N 247 G2M O3A O N N 248 G2M C3B C N N 249 G2M C3B2 C N N 250 G2M C3B3 C N N 251 G2M O3G O N N 252 G2M "C4'" C N R 253 G2M "O4'" O N N 254 G2M "C5'" C N N 255 G2M "O5'" O N N 256 G2M HN1 H N N 257 G2M HN2 H N N 258 G2M HN2A H N N 259 G2M H8 H N N 260 G2M "H1'" H N N 261 G2M "H2'" H N N 262 G2M "H2'A" H N N 263 G2M "H3'" H N N 264 G2M "HO3'" H N N 265 G2M HC3B H N N 266 G2M HC3A H N N 267 G2M HC3C H N N 268 G2M HC3D H N N 269 G2M HC3E H N N 270 G2M HC3F H N N 271 G2M "H4'" H N N 272 G2M "H5'" H N N 273 G2M "H5'A" H N N 274 G2M H19 H N N 275 G2M H20 H N N 276 G2M H21 H N N 277 G2M H22 H N N 278 HOH O O N N 279 HOH H1 H N N 280 HOH H2 H N N 281 NCO CO CO N N 282 NCO N1 N N N 283 NCO N2 N N N 284 NCO N3 N N N 285 NCO N4 N N N 286 NCO N5 N N N 287 NCO N6 N N N 288 NCO HN11 H N N 289 NCO HN12 H N N 290 NCO HN13 H N N 291 NCO HN21 H N N 292 NCO HN22 H N N 293 NCO HN23 H N N 294 NCO HN31 H N N 295 NCO HN32 H N N 296 NCO HN33 H N N 297 NCO HN41 H N N 298 NCO HN42 H N N 299 NCO HN43 H N N 300 NCO HN51 H N N 301 NCO HN52 H N N 302 NCO HN53 H N N 303 NCO HN61 H N N 304 NCO HN62 H N N 305 NCO HN63 H N N 306 OMC N1 N N N 307 OMC C2 C N N 308 OMC N3 N N N 309 OMC C4 C N N 310 OMC C5 C N N 311 OMC C6 C N N 312 OMC O2 O N N 313 OMC N4 N N N 314 OMC "C1'" C N R 315 OMC "C2'" C N R 316 OMC "O2'" O N N 317 OMC CM2 C N N 318 OMC "C3'" C N R 319 OMC "C4'" C N R 320 OMC "O4'" O N N 321 OMC "O3'" O N N 322 OMC "C5'" C N N 323 OMC "O5'" O N N 324 OMC P P N N 325 OMC OP1 O N N 326 OMC OP2 O N N 327 OMC OP3 O N N 328 OMC H5 H N N 329 OMC H6 H N N 330 OMC HN41 H N N 331 OMC HN42 H N N 332 OMC "H1'" H N N 333 OMC "H2'" H N N 334 OMC HM21 H N N 335 OMC HM22 H N N 336 OMC HM23 H N N 337 OMC "H3'" H N N 338 OMC "H4'" H N N 339 OMC "HO3'" H N N 340 OMC "H5'" H N N 341 OMC "H5''" H N N 342 OMC HOP2 H N N 343 OMC HOP3 H N N 344 OMU N1 N N N 345 OMU C2 C N N 346 OMU N3 N N N 347 OMU C4 C N N 348 OMU C5 C N N 349 OMU C6 C N N 350 OMU O2 O N N 351 OMU O4 O N N 352 OMU "C1'" C N R 353 OMU "C2'" C N R 354 OMU "O2'" O N N 355 OMU CM2 C N N 356 OMU "C3'" C N R 357 OMU "C4'" C N R 358 OMU "O3'" O N N 359 OMU "O4'" O N N 360 OMU "C5'" C N N 361 OMU "O5'" O N N 362 OMU P P N N 363 OMU OP1 O N N 364 OMU OP2 O N N 365 OMU OP3 O N N 366 OMU HN3 H N N 367 OMU H5 H N N 368 OMU H6 H N N 369 OMU "H1'" H N N 370 OMU "H2'" H N N 371 OMU HM21 H N N 372 OMU HM22 H N N 373 OMU HM23 H N N 374 OMU "H3'" H N N 375 OMU "H4'" H N N 376 OMU "HO3'" H N N 377 OMU "H5'" H N N 378 OMU "H5''" H N N 379 OMU HOP2 H N N 380 OMU HOP3 H N N 381 U OP3 O N N 382 U P P N N 383 U OP1 O N N 384 U OP2 O N N 385 U "O5'" O N N 386 U "C5'" C N N 387 U "C4'" C N R 388 U "O4'" O N N 389 U "C3'" C N S 390 U "O3'" O N N 391 U "C2'" C N R 392 U "O2'" O N N 393 U "C1'" C N R 394 U N1 N N N 395 U C2 C N N 396 U O2 O N N 397 U N3 N N N 398 U C4 C N N 399 U O4 O N N 400 U C5 C N N 401 U C6 C N N 402 U HOP3 H N N 403 U HOP2 H N N 404 U "H5'" H N N 405 U "H5''" H N N 406 U "H4'" H N N 407 U "H3'" H N N 408 U "HO3'" H N N 409 U "H2'" H N N 410 U "HO2'" H N N 411 U "H1'" H N N 412 U H3 H N N 413 U H5 H N N 414 U H6 H N N 415 U2M N N N N 416 U2M CA C N S 417 U2M C C N N 418 U2M O O N N 419 U2M CB C N N 420 U2M CG C N N 421 U2M CD C N N 422 U2M CE C N N 423 U2M CZ C N N 424 U2M SH S N N 425 U2M H H N N 426 U2M H2 H N N 427 U2M HA H N N 428 U2M H6 H N N 429 U2M H7 H N N 430 U2M H8 H N N 431 U2M H9 H N N 432 U2M H10 H N N 433 U2M H11 H N N 434 U2M H12 H N N 435 U2M H13 H N N 436 U2M H14 H N N 437 U2M H15 H N N 438 U2M H16 H N N 439 U2M OXT O N N 440 U2M HXT H N N 441 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A2M P OP1 doub N N 40 A2M P OP3 sing N N 41 A2M P "O5'" sing N N 42 A2M OP3 HOP3 sing N N 43 A2M "O5'" "C5'" sing N N 44 A2M "C5'" "C4'" sing N N 45 A2M "C5'" "H5'" sing N N 46 A2M "C5'" "H5''" sing N N 47 A2M "C4'" "O4'" sing N N 48 A2M "C4'" "C3'" sing N N 49 A2M "C4'" "H4'" sing N N 50 A2M "O4'" "C1'" sing N N 51 A2M "C3'" "O3'" sing N N 52 A2M "C3'" "C2'" sing N N 53 A2M "C3'" "H3'" sing N N 54 A2M "O3'" "HO3'" sing N N 55 A2M "C2'" "O2'" sing N N 56 A2M "C2'" "C1'" sing N N 57 A2M "C2'" "H2'" sing N N 58 A2M "O2'" "CM'" sing N N 59 A2M "C1'" N9 sing N N 60 A2M "C1'" "H1'" sing N N 61 A2M "CM'" "HM'1" sing N N 62 A2M "CM'" "HM'2" sing N N 63 A2M "CM'" "HM'3" sing N N 64 A2M N9 C8 sing Y N 65 A2M N9 C4 sing Y N 66 A2M C8 N7 doub Y N 67 A2M C8 H8 sing N N 68 A2M N7 C5 sing Y N 69 A2M C5 C6 sing Y N 70 A2M C5 C4 doub Y N 71 A2M C6 N6 sing N N 72 A2M C6 N1 doub Y N 73 A2M N6 H61 sing N N 74 A2M N6 H62 sing N N 75 A2M N1 C2 sing Y N 76 A2M C2 N3 doub Y N 77 A2M C2 H2 sing N N 78 A2M N3 C4 sing Y N 79 A2M P OP2 sing N N 80 A2M OP2 HOP2 sing N N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 DA OP3 P sing N N 118 DA OP3 HOP3 sing N N 119 DA P OP1 doub N N 120 DA P OP2 sing N N 121 DA P "O5'" sing N N 122 DA OP2 HOP2 sing N N 123 DA "O5'" "C5'" sing N N 124 DA "C5'" "C4'" sing N N 125 DA "C5'" "H5'" sing N N 126 DA "C5'" "H5''" sing N N 127 DA "C4'" "O4'" sing N N 128 DA "C4'" "C3'" sing N N 129 DA "C4'" "H4'" sing N N 130 DA "O4'" "C1'" sing N N 131 DA "C3'" "O3'" sing N N 132 DA "C3'" "C2'" sing N N 133 DA "C3'" "H3'" sing N N 134 DA "O3'" "HO3'" sing N N 135 DA "C2'" "C1'" sing N N 136 DA "C2'" "H2'" sing N N 137 DA "C2'" "H2''" sing N N 138 DA "C1'" N9 sing N N 139 DA "C1'" "H1'" sing N N 140 DA N9 C8 sing Y N 141 DA N9 C4 sing Y N 142 DA C8 N7 doub Y N 143 DA C8 H8 sing N N 144 DA N7 C5 sing Y N 145 DA C5 C6 sing Y N 146 DA C5 C4 doub Y N 147 DA C6 N6 sing N N 148 DA C6 N1 doub Y N 149 DA N6 H61 sing N N 150 DA N6 H62 sing N N 151 DA N1 C2 sing Y N 152 DA C2 N3 doub Y N 153 DA C2 H2 sing N N 154 DA N3 C4 sing Y N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 G OP3 P sing N N 195 G OP3 HOP3 sing N N 196 G P OP1 doub N N 197 G P OP2 sing N N 198 G P "O5'" sing N N 199 G OP2 HOP2 sing N N 200 G "O5'" "C5'" sing N N 201 G "C5'" "C4'" sing N N 202 G "C5'" "H5'" sing N N 203 G "C5'" "H5''" sing N N 204 G "C4'" "O4'" sing N N 205 G "C4'" "C3'" sing N N 206 G "C4'" "H4'" sing N N 207 G "O4'" "C1'" sing N N 208 G "C3'" "O3'" sing N N 209 G "C3'" "C2'" sing N N 210 G "C3'" "H3'" sing N N 211 G "O3'" "HO3'" sing N N 212 G "C2'" "O2'" sing N N 213 G "C2'" "C1'" sing N N 214 G "C2'" "H2'" sing N N 215 G "O2'" "HO2'" sing N N 216 G "C1'" N9 sing N N 217 G "C1'" "H1'" sing N N 218 G N9 C8 sing Y N 219 G N9 C4 sing Y N 220 G C8 N7 doub Y N 221 G C8 H8 sing N N 222 G N7 C5 sing Y N 223 G C5 C6 sing N N 224 G C5 C4 doub Y N 225 G C6 O6 doub N N 226 G C6 N1 sing N N 227 G N1 C2 sing N N 228 G N1 H1 sing N N 229 G C2 N2 sing N N 230 G C2 N3 doub N N 231 G N2 H21 sing N N 232 G N2 H22 sing N N 233 G N3 C4 sing N N 234 G2M N1 C2 sing N N 235 G2M N1 C6 sing N N 236 G2M N1 HN1 sing N N 237 G2M C2 N2 sing N N 238 G2M C2 N3 doub N N 239 G2M N2 HN2 sing N N 240 G2M N2 HN2A sing N N 241 G2M N3 C4 sing N N 242 G2M C4 C5 doub Y N 243 G2M C4 N9 sing Y N 244 G2M C5 C6 sing N N 245 G2M C5 N7 sing Y N 246 G2M C6 O6 doub N N 247 G2M N7 C8 doub Y N 248 G2M C8 N9 sing Y N 249 G2M C8 H8 sing N N 250 G2M N9 "C1'" sing N N 251 G2M PA O1A doub N N 252 G2M PA O2A sing N N 253 G2M PA O3A sing N N 254 G2M PA "O5'" sing N N 255 G2M PB O1B sing N N 256 G2M PB O2B doub N N 257 G2M PB O3A sing N N 258 G2M PB C3B sing N N 259 G2M PG O1G sing N N 260 G2M PG O2G sing N N 261 G2M PG C3B sing N N 262 G2M PG O3G doub N N 263 G2M "C1'" "C2'" sing N N 264 G2M "C1'" "O4'" sing N N 265 G2M "C1'" "H1'" sing N N 266 G2M "C2'" "C3'" sing N N 267 G2M "C2'" "H2'" sing N N 268 G2M "C2'" "H2'A" sing N N 269 G2M "C3'" "O3'" sing N N 270 G2M "C3'" "C4'" sing N N 271 G2M "C3'" "H3'" sing N N 272 G2M "O3'" "HO3'" sing N N 273 G2M C3B C3B2 sing N N 274 G2M C3B C3B3 sing N N 275 G2M C3B2 HC3B sing N N 276 G2M C3B2 HC3A sing N N 277 G2M C3B2 HC3C sing N N 278 G2M C3B3 HC3D sing N N 279 G2M C3B3 HC3E sing N N 280 G2M C3B3 HC3F sing N N 281 G2M "C4'" "O4'" sing N N 282 G2M "C4'" "C5'" sing N N 283 G2M "C4'" "H4'" sing N N 284 G2M "C5'" "O5'" sing N N 285 G2M "C5'" "H5'" sing N N 286 G2M "C5'" "H5'A" sing N N 287 G2M O1B H19 sing N N 288 G2M O1G H20 sing N N 289 G2M O2A H21 sing N N 290 G2M O2G H22 sing N N 291 HOH O H1 sing N N 292 HOH O H2 sing N N 293 NCO CO N1 sing N N 294 NCO CO N2 sing N N 295 NCO CO N3 sing N N 296 NCO CO N4 sing N N 297 NCO CO N5 sing N N 298 NCO CO N6 sing N N 299 NCO N1 HN11 sing N N 300 NCO N1 HN12 sing N N 301 NCO N1 HN13 sing N N 302 NCO N2 HN21 sing N N 303 NCO N2 HN22 sing N N 304 NCO N2 HN23 sing N N 305 NCO N3 HN31 sing N N 306 NCO N3 HN32 sing N N 307 NCO N3 HN33 sing N N 308 NCO N4 HN41 sing N N 309 NCO N4 HN42 sing N N 310 NCO N4 HN43 sing N N 311 NCO N5 HN51 sing N N 312 NCO N5 HN52 sing N N 313 NCO N5 HN53 sing N N 314 NCO N6 HN61 sing N N 315 NCO N6 HN62 sing N N 316 NCO N6 HN63 sing N N 317 OMC N1 C2 sing N N 318 OMC N1 C6 sing N N 319 OMC N1 "C1'" sing N N 320 OMC C2 N3 sing N N 321 OMC C2 O2 doub N N 322 OMC N3 C4 doub N N 323 OMC C4 C5 sing N N 324 OMC C4 N4 sing N N 325 OMC C5 C6 doub N N 326 OMC C5 H5 sing N N 327 OMC C6 H6 sing N N 328 OMC N4 HN41 sing N N 329 OMC N4 HN42 sing N N 330 OMC "C1'" "C2'" sing N N 331 OMC "C1'" "O4'" sing N N 332 OMC "C1'" "H1'" sing N N 333 OMC "C2'" "O2'" sing N N 334 OMC "C2'" "C3'" sing N N 335 OMC "C2'" "H2'" sing N N 336 OMC "O2'" CM2 sing N N 337 OMC CM2 HM21 sing N N 338 OMC CM2 HM22 sing N N 339 OMC CM2 HM23 sing N N 340 OMC "C3'" "C4'" sing N N 341 OMC "C3'" "O3'" sing N N 342 OMC "C3'" "H3'" sing N N 343 OMC "C4'" "O4'" sing N N 344 OMC "C4'" "C5'" sing N N 345 OMC "C4'" "H4'" sing N N 346 OMC "O3'" "HO3'" sing N N 347 OMC "C5'" "O5'" sing N N 348 OMC "C5'" "H5'" sing N N 349 OMC "C5'" "H5''" sing N N 350 OMC "O5'" P sing N N 351 OMC P OP1 doub N N 352 OMC P OP2 sing N N 353 OMC P OP3 sing N N 354 OMC OP2 HOP2 sing N N 355 OMC OP3 HOP3 sing N N 356 OMU N1 C2 sing N N 357 OMU N1 C6 sing N N 358 OMU N1 "C1'" sing N N 359 OMU C2 N3 sing N N 360 OMU C2 O2 doub N N 361 OMU N3 C4 sing N N 362 OMU N3 HN3 sing N N 363 OMU C4 C5 sing N N 364 OMU C4 O4 doub N N 365 OMU C5 C6 doub N N 366 OMU C5 H5 sing N N 367 OMU C6 H6 sing N N 368 OMU "C1'" "C2'" sing N N 369 OMU "C1'" "O4'" sing N N 370 OMU "C1'" "H1'" sing N N 371 OMU "C2'" "O2'" sing N N 372 OMU "C2'" "C3'" sing N N 373 OMU "C2'" "H2'" sing N N 374 OMU "O2'" CM2 sing N N 375 OMU CM2 HM21 sing N N 376 OMU CM2 HM22 sing N N 377 OMU CM2 HM23 sing N N 378 OMU "C3'" "C4'" sing N N 379 OMU "C3'" "O3'" sing N N 380 OMU "C3'" "H3'" sing N N 381 OMU "C4'" "O4'" sing N N 382 OMU "C4'" "C5'" sing N N 383 OMU "C4'" "H4'" sing N N 384 OMU "O3'" "HO3'" sing N N 385 OMU "C5'" "O5'" sing N N 386 OMU "C5'" "H5'" sing N N 387 OMU "C5'" "H5''" sing N N 388 OMU "O5'" P sing N N 389 OMU P OP1 doub N N 390 OMU P OP2 sing N N 391 OMU P OP3 sing N N 392 OMU OP2 HOP2 sing N N 393 OMU OP3 HOP3 sing N N 394 U OP3 P sing N N 395 U OP3 HOP3 sing N N 396 U P OP1 doub N N 397 U P OP2 sing N N 398 U P "O5'" sing N N 399 U OP2 HOP2 sing N N 400 U "O5'" "C5'" sing N N 401 U "C5'" "C4'" sing N N 402 U "C5'" "H5'" sing N N 403 U "C5'" "H5''" sing N N 404 U "C4'" "O4'" sing N N 405 U "C4'" "C3'" sing N N 406 U "C4'" "H4'" sing N N 407 U "O4'" "C1'" sing N N 408 U "C3'" "O3'" sing N N 409 U "C3'" "C2'" sing N N 410 U "C3'" "H3'" sing N N 411 U "O3'" "HO3'" sing N N 412 U "C2'" "O2'" sing N N 413 U "C2'" "C1'" sing N N 414 U "C2'" "H2'" sing N N 415 U "O2'" "HO2'" sing N N 416 U "C1'" N1 sing N N 417 U "C1'" "H1'" sing N N 418 U N1 C2 sing N N 419 U N1 C6 sing N N 420 U C2 O2 doub N N 421 U C2 N3 sing N N 422 U N3 C4 sing N N 423 U N3 H3 sing N N 424 U C4 O4 doub N N 425 U C4 C5 sing N N 426 U C5 C6 doub N N 427 U C5 H5 sing N N 428 U C6 H6 sing N N 429 U2M O C doub N N 430 U2M CA C sing N N 431 U2M CA N sing N N 432 U2M CA CB sing N N 433 U2M CG CB sing N N 434 U2M CG CD sing N N 435 U2M SH CZ sing N N 436 U2M CE CZ sing N N 437 U2M CE CD sing N N 438 U2M N H sing N N 439 U2M N H2 sing N N 440 U2M CA HA sing N N 441 U2M CB H6 sing N N 442 U2M CB H7 sing N N 443 U2M CG H8 sing N N 444 U2M CG H9 sing N N 445 U2M CD H10 sing N N 446 U2M CD H11 sing N N 447 U2M CE H12 sing N N 448 U2M CE H13 sing N N 449 U2M CZ H14 sing N N 450 U2M CZ H15 sing N N 451 U2M SH H16 sing N N 452 U2M C OXT sing N N 453 U2M OXT HXT sing N N 454 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7EEO 'double helix' 7EEO 'a-form double helix' 7EEO tetraloop 7EEO 'mismatched base pair' 7EEO 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A OMC 3 1_555 A G 25 1_555 0.266 0.890 0.111 11.300 4.852 9.913 1 A_OMC3:G25_A A 3 ? A 25 ? ? 1 1 A OMU 4 1_555 A A 24 1_555 -1.084 -0.127 0.050 1.569 3.306 -14.169 2 A_OMU4:A24_A A 4 ? A 24 ? 20 1 1 A OMC 5 1_555 A G 23 1_555 -0.031 -0.257 -0.036 5.295 -7.870 6.568 3 A_OMC5:G23_A A 5 ? A 23 ? 19 1 1 A OMC 6 1_555 A G 22 1_555 0.048 -0.189 0.112 0.074 -6.109 -0.388 4 A_OMC6:G22_A A 6 ? A 22 ? 19 1 1 A OMU 7 1_555 A C 21 1_555 5.699 -2.481 0.109 -10.732 -8.269 -10.038 5 A_OMU7:C21_A A 7 ? A 21 ? ? ? 1 A OMU 10 1_555 A A 19 1_555 3.951 -1.727 -0.570 4.665 -10.675 -106.112 6 A_OMU10:A19_A A 10 ? A 19 ? 24 4 1 A A2M 11 1_555 A G 18 1_555 -6.826 -4.040 -0.101 -1.029 -5.563 -6.079 7 A_A2M11:G18_A A 11 ? A 18 ? 11 9 1 A OMC 12 1_555 A G 17 1_555 -0.688 -0.103 -0.315 7.567 -0.787 -1.031 8 A_OMC12:G17_A A 12 ? A 17 ? 19 1 1 A G 13 1_555 A A 16 1_555 7.730 -5.441 0.795 2.824 -18.797 -38.820 9 A_G13:A16_A A 13 ? A 16 ? ? ? 1 B OMU 4 1_555 B A 24 1_555 -0.156 -0.216 0.927 -13.915 -1.305 -5.281 10 B_OMU4:A24_B B 4 ? B 24 ? 20 1 1 B OMC 5 1_555 B G 23 1_555 0.184 -0.308 0.495 -4.794 -11.145 -9.919 11 B_OMC5:G23_B B 5 ? B 23 ? 19 1 1 B OMC 6 1_555 B G 22 1_555 1.007 -0.243 0.275 -7.356 -10.285 3.317 12 B_OMC6:G22_B B 6 ? B 22 ? 19 1 1 B OMU 7 1_555 B C 21 1_555 5.154 -1.984 0.205 -9.464 -6.825 -7.847 13 B_OMU7:C21_B B 7 ? B 21 ? ? ? 1 B OMU 10 1_555 B A 19 1_555 4.042 -1.968 -0.603 5.428 -13.812 -103.297 14 B_OMU10:A19_B B 10 ? B 19 ? 24 4 1 B A2M 11 1_555 B G 18 1_555 -6.759 -4.071 0.033 -1.913 -5.923 -4.672 15 B_A2M11:G18_B B 11 ? B 18 ? 11 10 1 B OMC 12 1_555 B G 17 1_555 0.033 0.020 0.120 3.764 -1.324 4.180 16 B_OMC12:G17_B B 12 ? B 17 ? 19 1 1 B G 13 1_555 B A 16 1_555 6.617 -4.692 0.694 20.138 6.118 -19.852 17 B_G13:A16_B B 13 ? B 16 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A OMC 3 1_555 A G 25 1_555 A OMU 4 1_555 A A 24 1_555 -2.436 -2.192 3.298 -7.231 4.450 29.574 -5.049 3.109 3.426 8.499 13.810 30.743 1 AA_OMC3OMU4:A24G25_AA A 3 ? A 25 ? A 4 ? A 24 ? 1 A OMU 4 1_555 A A 24 1_555 A OMC 5 1_555 A G 23 1_555 0.628 -1.790 3.253 -2.329 2.035 34.308 -3.331 -1.412 3.097 3.440 3.938 34.443 2 AA_OMU4OMC5:G23A24_AA A 4 ? A 24 ? A 5 ? A 23 ? 1 A OMC 5 1_555 A G 23 1_555 A OMC 6 1_555 A G 22 1_555 -0.218 -1.909 3.307 -1.018 8.609 30.910 -4.903 0.223 2.696 15.768 1.865 32.074 3 AA_OMC5OMC6:G22G23_AA A 5 ? A 23 ? A 6 ? A 22 ? 1 A OMC 6 1_555 A G 22 1_555 A OMU 7 1_555 A C 21 1_555 -0.666 -1.495 3.769 5.615 7.532 56.086 -2.039 1.048 3.483 7.948 -5.925 56.805 4 AA_OMC6OMU7:C21G22_AA A 6 ? A 22 ? A 7 ? A 21 ? 1 A OMU 7 1_555 A C 21 1_555 A OMU 10 1_555 A A 19 1_555 -0.161 -1.239 6.215 6.978 -4.768 28.740 -0.498 3.094 6.130 -9.353 -13.689 29.931 5 AA_OMU7OMU10:A19C21_AA A 7 ? A 21 ? A 10 ? A 19 ? 1 A OMU 10 1_555 A A 19 1_555 A A2M 11 1_555 A G 18 1_555 5.263 -1.463 3.512 -1.953 2.628 -6.809 -0.753 31.142 5.033 -20.631 -15.330 -7.554 6 AA_OMU10A2M11:G18A19_AA A 10 ? A 19 ? A 11 ? A 18 ? 1 A A2M 11 1_555 A G 18 1_555 A OMC 12 1_555 A G 17 1_555 -0.185 -1.021 3.172 -2.987 4.899 57.927 -1.298 0.039 3.089 5.045 3.076 58.186 7 AA_A2M11OMC12:G17G18_AA A 11 ? A 18 ? A 12 ? A 17 ? 1 A OMC 12 1_555 A G 17 1_555 A G 13 1_555 A A 16 1_555 -3.947 -1.679 3.570 -2.919 17.099 58.787 -2.515 3.737 3.192 17.019 2.905 61.073 8 AA_OMC12G13:A16G17_AA A 12 ? A 17 ? A 13 ? A 16 ? 1 B OMU 4 1_555 B A 24 1_555 B OMC 5 1_555 B G 23 1_555 -0.772 -2.418 2.946 1.035 -3.809 33.282 -3.607 1.500 3.170 -6.621 -1.799 33.508 9 BB_OMU4OMC5:G23A24_BB B 4 ? B 24 ? B 5 ? B 23 ? 1 B OMC 5 1_555 B G 23 1_555 B OMC 6 1_555 B G 22 1_555 0.828 -1.543 3.085 2.963 2.343 38.484 -2.601 -0.908 3.042 3.544 -4.482 38.662 10 BB_OMC5OMC6:G22G23_BB B 5 ? B 23 ? B 6 ? B 22 ? 1 B OMC 6 1_555 B G 22 1_555 B OMU 7 1_555 B C 21 1_555 -0.925 -1.179 3.428 4.417 5.962 46.526 -1.973 1.526 3.167 7.492 -5.551 47.081 11 BB_OMC6OMU7:C21G22_BB B 6 ? B 22 ? B 7 ? B 21 ? 1 B OMU 7 1_555 B C 21 1_555 B OMU 10 1_555 B A 19 1_555 0.126 -0.728 6.305 6.279 -5.116 33.691 0.312 1.672 6.267 -8.672 -10.643 34.624 12 BB_OMU7OMU10:A19C21_BB B 7 ? B 21 ? B 10 ? B 19 ? 1 B OMU 10 1_555 B A 19 1_555 B A2M 11 1_555 B G 18 1_555 5.326 -1.152 3.517 -3.287 1.509 -6.270 0.972 24.435 5.704 -12.516 -27.261 -7.238 13 BB_OMU10A2M11:G18A19_BB B 10 ? B 19 ? B 11 ? B 18 ? 1 B A2M 11 1_555 B G 18 1_555 B OMC 12 1_555 B G 17 1_555 0.046 -0.556 3.392 -3.888 2.453 60.313 -0.675 -0.241 3.361 2.438 3.864 60.472 14 BB_A2M11OMC12:G17G18_BB B 11 ? B 18 ? B 12 ? B 17 ? 1 B OMC 12 1_555 B G 17 1_555 B G 13 1_555 B A 16 1_555 -2.495 -1.247 2.839 -3.938 5.255 49.109 -1.830 2.723 2.879 6.290 4.714 49.519 15 BB_OMC12G13:A16G17_BB B 12 ? B 17 ? B 13 ? B 16 ? # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 OMC ? ? OMC ? ? 'SUBJECT OF INVESTIGATION' ? 2 OMU ? ? OMU ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Q9A _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #