HEADER GENE REGULATION 20-MAR-21 7EF1 TITLE CRYSTAL STRUCTURE OF MAIZE SHH2 SAWADEE DOMAIN IN COMPLEX WITH AND TITLE 2 H3K9ME1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HB TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2; COMPND 9 CHAIN: P, Q; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: 100279552, HB131, ZEAMMB73_ZM00001D005584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 13 ORGANISM_COMMON: MAIZE; SOURCE 14 ORGANISM_TAXID: 4577 KEYWDS SAWADEE DOMAIN, MAIZE, SHH2, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,J.DU REVDAT 2 29-NOV-23 7EF1 1 REMARK REVDAT 1 30-JUN-21 7EF1 0 JRNL AUTH Y.WANG,X.ZHOU,J.LUO,S.LV,R.LIU,X.DU,B.JIA,F.YUAN,H.ZHANG, JRNL AUTH 2 J.DU JRNL TITL RECOGNITION OF H3K9ME1 BY MAIZE RNA-DIRECTED DNA METHYLATION JRNL TITL 2 FACTOR SHH2. JRNL REF J INTEGR PLANT BIOL V. 63 1091 2021 JRNL REFN ISSN 1744-7909 JRNL PMID 33913587 JRNL DOI 10.1111/JIPB.13103 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8630 - 4.2233 0.99 2675 132 0.2001 0.2336 REMARK 3 2 4.2233 - 3.3530 0.99 2533 123 0.1673 0.1959 REMARK 3 3 3.3530 - 2.9294 1.00 2516 143 0.1903 0.2512 REMARK 3 4 2.9294 - 2.6617 1.00 2518 130 0.1935 0.2213 REMARK 3 5 2.6617 - 2.4710 1.00 2468 146 0.1957 0.2274 REMARK 3 6 2.4710 - 2.3253 1.00 2496 126 0.1906 0.2246 REMARK 3 7 2.3253 - 2.2089 1.00 2479 124 0.1838 0.2201 REMARK 3 8 2.2089 - 2.1127 1.00 2486 143 0.2008 0.2336 REMARK 3 9 2.1127 - 2.0314 1.00 2425 147 0.2043 0.2264 REMARK 3 10 2.0314 - 1.9613 0.99 2426 149 0.2070 0.2265 REMARK 3 11 1.9613 - 1.9000 0.99 2483 113 0.2157 0.2331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2525 REMARK 3 ANGLE : 0.877 3399 REMARK 3 CHIRALITY : 0.034 358 REMARK 3 PLANARITY : 0.003 451 REMARK 3 DIHEDRAL : 13.941 953 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4168 10.4273 -14.5660 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.2212 REMARK 3 T33: 0.2558 T12: -0.0097 REMARK 3 T13: -0.0278 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 3.5711 L22: 5.5862 REMARK 3 L33: 6.4274 L12: 4.4060 REMARK 3 L13: -1.3609 L23: -2.1672 REMARK 3 S TENSOR REMARK 3 S11: 0.4510 S12: 0.0823 S13: 0.0782 REMARK 3 S21: 0.4441 S22: -0.0919 S23: 0.3978 REMARK 3 S31: 0.1716 S32: -0.4351 S33: -0.3353 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2418 20.2432 -17.8686 REMARK 3 T TENSOR REMARK 3 T11: 0.2089 T22: 0.1155 REMARK 3 T33: 0.2003 T12: 0.0356 REMARK 3 T13: -0.0171 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 6.1553 L22: 2.2907 REMARK 3 L33: 5.1594 L12: 2.4465 REMARK 3 L13: 2.0218 L23: 2.2993 REMARK 3 S TENSOR REMARK 3 S11: 0.2193 S12: 0.0066 S13: 0.4003 REMARK 3 S21: -0.1426 S22: -0.3234 S23: 0.0893 REMARK 3 S31: -0.2531 S32: -0.1466 S33: 0.0242 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2592 10.5333 -31.9580 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.3076 REMARK 3 T33: 0.2526 T12: -0.0434 REMARK 3 T13: 0.0071 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 3.8847 L22: 5.1419 REMARK 3 L33: 6.5945 L12: 1.0881 REMARK 3 L13: 0.6958 L23: 1.4964 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.5806 S13: -0.2365 REMARK 3 S21: -0.2983 S22: 0.5048 S23: -0.8717 REMARK 3 S31: 0.0319 S32: 0.7711 S33: -0.2645 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6993 22.4316 -23.5541 REMARK 3 T TENSOR REMARK 3 T11: 0.3761 T22: 0.2524 REMARK 3 T33: 0.2142 T12: 0.0691 REMARK 3 T13: -0.0427 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.4795 L22: 6.9384 REMARK 3 L33: 5.0634 L12: -0.0385 REMARK 3 L13: 0.1676 L23: 1.2236 REMARK 3 S TENSOR REMARK 3 S11: 0.3146 S12: 0.2489 S13: 0.6267 REMARK 3 S21: -0.8245 S22: -0.3353 S23: 0.0102 REMARK 3 S31: -1.0542 S32: -0.6242 S33: -0.0014 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1991 13.1714 -15.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1344 REMARK 3 T33: 0.1630 T12: -0.0098 REMARK 3 T13: -0.0246 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 3.7830 L22: 1.9645 REMARK 3 L33: 2.0941 L12: -0.2096 REMARK 3 L13: 0.0233 L23: -1.2222 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: 0.0323 S13: -0.0994 REMARK 3 S21: -0.1793 S22: 0.0408 S23: 0.0449 REMARK 3 S31: 0.2051 S32: -0.1960 S33: 0.0255 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5061 18.6160 -1.7203 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1476 REMARK 3 T33: 0.1484 T12: 0.0083 REMARK 3 T13: -0.0225 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 3.8157 L22: 2.8371 REMARK 3 L33: 4.0049 L12: -1.2142 REMARK 3 L13: 0.3677 L23: -0.9749 REMARK 3 S TENSOR REMARK 3 S11: -0.1727 S12: -0.1791 S13: 0.1994 REMARK 3 S21: 0.1585 S22: 0.0407 S23: -0.0202 REMARK 3 S31: -0.3290 S32: -0.0111 S33: 0.0959 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1546 18.0169 13.4689 REMARK 3 T TENSOR REMARK 3 T11: 0.5027 T22: 0.4361 REMARK 3 T33: 0.3508 T12: 0.0946 REMARK 3 T13: 0.0964 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.3064 L22: 1.1564 REMARK 3 L33: 6.7861 L12: 2.2351 REMARK 3 L13: -0.5926 L23: -1.7199 REMARK 3 S TENSOR REMARK 3 S11: -0.5211 S12: -1.3395 S13: 1.0385 REMARK 3 S21: 1.3583 S22: 0.6860 S23: 0.5949 REMARK 3 S31: -0.2366 S32: -0.3969 S33: -0.0195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7935 20.3943 -2.0360 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1522 REMARK 3 T33: 0.2048 T12: 0.0030 REMARK 3 T13: -0.0450 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 4.7591 L22: 4.9108 REMARK 3 L33: 7.1545 L12: 1.4520 REMARK 3 L13: -2.5720 L23: -1.8292 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: -0.4324 S13: 0.5437 REMARK 3 S21: 0.1258 S22: -0.0514 S23: -0.1964 REMARK 3 S31: -0.2842 S32: 0.3955 S33: 0.0947 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3281 19.1864 0.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1705 REMARK 3 T33: 0.1906 T12: 0.0522 REMARK 3 T13: -0.0014 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.4528 L22: 3.3273 REMARK 3 L33: 3.8104 L12: 0.8489 REMARK 3 L13: 0.5504 L23: 2.0823 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.0229 S13: 0.1546 REMARK 3 S21: 0.1576 S22: 0.1041 S23: -0.1720 REMARK 3 S31: -0.1874 S32: 0.0835 S33: -0.0594 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6903 0.8871 3.1207 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.2806 REMARK 3 T33: 0.3288 T12: -0.0082 REMARK 3 T13: 0.0512 T23: 0.0772 REMARK 3 L TENSOR REMARK 3 L11: 5.5087 L22: 6.8372 REMARK 3 L33: 8.5150 L12: 5.0124 REMARK 3 L13: -5.2122 L23: -5.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.1593 S12: -0.0530 S13: -0.2698 REMARK 3 S21: 0.7082 S22: 0.3196 S23: 0.7394 REMARK 3 S31: -0.1461 S32: -0.7382 S33: -0.3776 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9862 -8.2152 5.1225 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.3010 REMARK 3 T33: 0.2272 T12: -0.0053 REMARK 3 T13: 0.0239 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 9.2118 L22: 9.1498 REMARK 3 L33: 4.5593 L12: 8.2913 REMARK 3 L13: 2.1286 L23: 1.6879 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: 0.0969 S13: -0.5166 REMARK 3 S21: -0.2033 S22: -0.1315 S23: 0.0291 REMARK 3 S31: 0.3126 S32: -0.1924 S33: 0.1503 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4501 -6.9384 8.4988 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.3255 REMARK 3 T33: 0.2135 T12: 0.0524 REMARK 3 T13: 0.0234 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 4.6185 L22: 3.4197 REMARK 3 L33: 5.6077 L12: 3.0770 REMARK 3 L13: -2.2990 L23: -2.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.4946 S13: -0.1799 REMARK 3 S21: 0.0741 S22: -0.2916 S23: -0.2515 REMARK 3 S31: 0.0616 S32: 0.8718 S33: 0.1338 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2478 -7.3882 17.6962 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.4036 REMARK 3 T33: 0.2718 T12: -0.0327 REMARK 3 T13: 0.0199 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 5.3250 L22: 3.7231 REMARK 3 L33: 7.5343 L12: 0.9593 REMARK 3 L13: -1.7767 L23: -1.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.3512 S12: -0.3507 S13: 0.5132 REMARK 3 S21: 0.2614 S22: -0.3061 S23: -0.5533 REMARK 3 S31: -0.0670 S32: 1.0721 S33: -0.1561 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7899 -3.9335 6.6104 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.2114 REMARK 3 T33: 0.2260 T12: -0.0045 REMARK 3 T13: 0.0360 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 3.0374 L22: 1.9109 REMARK 3 L33: 7.6128 L12: 0.4492 REMARK 3 L13: 2.0812 L23: -1.6906 REMARK 3 S TENSOR REMARK 3 S11: 0.0752 S12: -0.2753 S13: -0.1144 REMARK 3 S21: 0.0257 S22: -0.0002 S23: -0.0307 REMARK 3 S31: -0.1576 S32: -0.0856 S33: -0.0792 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8128 -0.8441 -7.3777 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.2158 REMARK 3 T33: 0.1887 T12: 0.0046 REMARK 3 T13: 0.0673 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.2665 L22: 3.5845 REMARK 3 L33: 3.1268 L12: 0.2415 REMARK 3 L13: -0.3121 L23: 0.5632 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.0841 S13: -0.3296 REMARK 3 S21: -0.2451 S22: -0.0430 S23: -0.2243 REMARK 3 S31: 0.0355 S32: 0.5581 S33: 0.0213 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0424 -5.8242 -23.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.3701 T22: 0.2892 REMARK 3 T33: 0.2735 T12: 0.0326 REMARK 3 T13: 0.0297 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 4.4807 L22: 3.3484 REMARK 3 L33: 9.0768 L12: -0.9686 REMARK 3 L13: 1.4080 L23: 4.8980 REMARK 3 S TENSOR REMARK 3 S11: 0.3675 S12: 0.6803 S13: -0.3756 REMARK 3 S21: -0.8694 S22: -0.5874 S23: -0.0628 REMARK 3 S31: -0.3751 S32: -0.1615 S33: 0.1116 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3019 1.0335 -8.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1545 REMARK 3 T33: 0.1972 T12: -0.0204 REMARK 3 T13: 0.0685 T23: -0.0542 REMARK 3 L TENSOR REMARK 3 L11: 3.9157 L22: 2.4686 REMARK 3 L33: 4.0707 L12: 0.3220 REMARK 3 L13: 0.6930 L23: 0.5673 REMARK 3 S TENSOR REMARK 3 S11: -0.1874 S12: 0.1781 S13: -0.0870 REMARK 3 S21: -0.3576 S22: 0.2955 S23: -0.3012 REMARK 3 S31: -0.1061 S32: 0.3962 S33: -0.1216 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8402 -1.1031 -8.1172 REMARK 3 T TENSOR REMARK 3 T11: 0.2321 T22: 0.3466 REMARK 3 T33: 0.3569 T12: -0.0554 REMARK 3 T13: -0.0305 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.5369 L22: 8.1939 REMARK 3 L33: 3.9955 L12: -0.9481 REMARK 3 L13: 2.1403 L23: -1.4529 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 0.3807 S13: -0.5226 REMARK 3 S21: -0.5976 S22: 0.0102 S23: 1.1936 REMARK 3 S31: 0.4063 S32: -1.0461 S33: -0.2769 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1297 25.0640 -8.8026 REMARK 3 T TENSOR REMARK 3 T11: 0.3635 T22: 0.2509 REMARK 3 T33: 0.3554 T12: -0.0371 REMARK 3 T13: 0.0169 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 7.1764 L22: 7.7121 REMARK 3 L33: 3.4309 L12: 1.4091 REMARK 3 L13: -2.5995 L23: -4.6388 REMARK 3 S TENSOR REMARK 3 S11: 0.5007 S12: -0.8257 S13: 0.1124 REMARK 3 S21: 0.7175 S22: 0.0133 S23: 1.2033 REMARK 3 S31: -0.3831 S32: 0.2940 S33: -0.4029 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4642 -12.4818 -2.5644 REMARK 3 T TENSOR REMARK 3 T11: 0.4206 T22: 0.4413 REMARK 3 T33: 0.5329 T12: 0.0887 REMARK 3 T13: 0.1160 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.3234 L22: 7.4989 REMARK 3 L33: 2.8526 L12: 0.3728 REMARK 3 L13: 0.2836 L23: 0.1725 REMARK 3 S TENSOR REMARK 3 S11: -0.2327 S12: 0.4510 S13: -1.5905 REMARK 3 S21: -1.1341 S22: 0.2390 S23: -0.8745 REMARK 3 S31: 0.3960 S32: 1.4100 S33: -0.0990 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH7.5, 70% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.41050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.48800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.28150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.48800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.41050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.28150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 ASN A 127 REMARK 465 PRO A 128 REMARK 465 VAL A 129 REMARK 465 GLU A 130 REMARK 465 ALA A 279 REMARK 465 THR A 280 REMARK 465 ASN A 281 REMARK 465 GLY B 125 REMARK 465 LYS B 126 REMARK 465 ASN B 127 REMARK 465 PRO B 128 REMARK 465 VAL B 129 REMARK 465 GLU B 130 REMARK 465 HIS B 273 REMARK 465 ALA B 274 REMARK 465 ALA B 275 REMARK 465 ARG B 276 REMARK 465 ALA B 277 REMARK 465 ALA B 278 REMARK 465 ALA B 279 REMARK 465 THR B 280 REMARK 465 ASN B 281 REMARK 465 ALA P 1 REMARK 465 ALA Q 1 REMARK 465 ARG Q 2 REMARK 465 SER Q 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 162 79.83 52.11 REMARK 500 PHE A 172 -30.58 -132.03 REMARK 500 ASP A 233 -158.84 -132.87 REMARK 500 ASP B 215 -48.61 71.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 7.27 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 HIS A 232 NE2 98.7 REMARK 620 3 CYS A 237 SG 113.1 105.4 REMARK 620 4 CYS A 239 SG 112.6 118.6 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 198 SG REMARK 620 2 HIS B 232 NE2 98.6 REMARK 620 3 CYS B 237 SG 112.4 109.6 REMARK 620 4 CYS B 239 SG 112.2 116.6 107.4 REMARK 620 N 1 2 3 DBREF 7EF1 A 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF1 B 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF1 P 1 10 UNP P69246 H32_MAIZE 2 11 DBREF 7EF1 Q 1 10 UNP P69246 H32_MAIZE 2 11 SEQADV 7EF1 GLY A 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQADV 7EF1 GLY B 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQRES 1 A 157 GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE GLU SEQRES 2 A 157 ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL ALA SEQRES 3 A 157 ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP PRO SEQRES 4 A 157 GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU GLU SEQRES 5 A 157 ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN ARG SEQRES 6 A 157 SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL LEU SEQRES 7 A 157 PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS ASP SEQRES 8 A 157 GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA GLN SEQRES 9 A 157 ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG PHE SEQRES 10 A 157 LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE VAL SEQRES 11 A 157 PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP TYR SEQRES 12 A 157 ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA THR SEQRES 13 A 157 ASN SEQRES 1 B 157 GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE GLU SEQRES 2 B 157 ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL ALA SEQRES 3 B 157 ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP PRO SEQRES 4 B 157 GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU GLU SEQRES 5 B 157 ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN ARG SEQRES 6 B 157 SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL LEU SEQRES 7 B 157 PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS ASP SEQRES 8 B 157 GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA GLN SEQRES 9 B 157 ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG PHE SEQRES 10 B 157 LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE VAL SEQRES 11 B 157 PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP TYR SEQRES 12 B 157 ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA THR SEQRES 13 B 157 ASN SEQRES 1 P 10 ALA ARG THR LYS GLN THR ALA ARG MLZ SER SEQRES 1 Q 10 ALA ARG THR LYS GLN THR ALA ARG MLZ SER MODRES 7EF1 MLZ P 9 LYS MODIFIED RESIDUE MODRES 7EF1 MLZ Q 9 LYS MODIFIED RESIDUE HET MLZ P 9 10 HET MLZ Q 9 10 HET ZN A 501 1 HET ZN B 501 1 HETNAM MLZ N-METHYL-LYSINE HETNAM ZN ZINC ION FORMUL 3 MLZ 2(C7 H16 N2 O2) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *234(H2 O) HELIX 1 AA1 GLY A 173 ASP A 177 5 5 HELIX 2 AA2 VAL A 182 CYS A 185 1 4 HELIX 3 AA3 GLU A 194 VAL A 201 5 8 HELIX 4 AA4 ARG A 262 GLU A 264 5 3 HELIX 5 AA5 THR A 265 ALA A 275 1 11 HELIX 6 AA6 GLY B 173 ASP B 177 5 5 HELIX 7 AA7 VAL B 182 CYS B 185 1 4 HELIX 8 AA8 GLU B 194 VAL B 201 5 8 HELIX 9 AA9 PRO B 255 ARG B 257 5 3 HELIX 10 AB1 THR B 265 LEU B 272 1 8 SHEET 1 AA1 5 GLU A 178 ASN A 181 0 SHEET 2 AA1 5 GLU A 164 PHE A 169 -1 N VAL A 167 O GLU A 178 SHEET 3 AA1 5 TRP A 146 ARG A 156 -1 N LEU A 153 O ARG A 166 SHEET 4 AA1 5 PHE A 136 LYS A 139 -1 N PHE A 136 O VAL A 149 SHEET 5 AA1 5 VAL A 186 GLN A 188 -1 O ARG A 187 N GLU A 137 SHEET 1 AA2 6 LEU A 191 PRO A 192 0 SHEET 2 AA2 6 VAL A 259 ARG A 261 -1 O ARG A 261 N LEU A 191 SHEET 3 AA2 6 LEU A 206 GLU A 212 -1 N LEU A 208 O CYS A 260 SHEET 4 AA2 6 ALA A 217 GLN A 228 -1 O TYR A 220 N CYS A 209 SHEET 5 AA2 6 ARG A 240 TYR A 245 -1 O ARG A 240 N GLN A 228 SHEET 6 AA2 6 GLU A 251 PRO A 255 -1 O GLU A 252 N VAL A 243 SHEET 1 AA3 5 GLU B 178 ASN B 181 0 SHEET 2 AA3 5 GLU B 164 PHE B 169 -1 N VAL B 165 O ILE B 180 SHEET 3 AA3 5 TRP B 146 ARG B 156 -1 N LEU B 153 O ARG B 166 SHEET 4 AA3 5 PHE B 136 LYS B 139 -1 N PHE B 136 O VAL B 149 SHEET 5 AA3 5 VAL B 186 GLN B 188 -1 O ARG B 187 N GLU B 137 SHEET 1 AA4 6 LEU B 191 PRO B 192 0 SHEET 2 AA4 6 VAL B 259 ARG B 261 -1 O ARG B 261 N LEU B 191 SHEET 3 AA4 6 LEU B 206 GLU B 212 -1 N LEU B 208 O CYS B 260 SHEET 4 AA4 6 ALA B 217 GLN B 228 -1 O LEU B 218 N GLN B 211 SHEET 5 AA4 6 ARG B 240 TYR B 245 -1 O ARG B 240 N GLN B 228 SHEET 6 AA4 6 GLU B 251 VAL B 254 -1 O GLU B 252 N VAL B 243 LINK C ARG P 8 N MLZ P 9 1555 1555 1.33 LINK C MLZ P 9 N SER P 10 1555 1555 1.33 LINK C ARG Q 8 N MLZ Q 9 1555 1555 1.33 LINK SG CYS A 198 ZN ZN A 501 1555 1555 2.33 LINK NE2 HIS A 232 ZN ZN A 501 1555 1555 2.18 LINK SG CYS A 237 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 239 ZN ZN A 501 1555 1555 2.33 LINK SG CYS B 198 ZN ZN B 501 1555 1555 2.36 LINK NE2 HIS B 232 ZN ZN B 501 1555 1555 2.13 LINK SG CYS B 237 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 239 ZN ZN B 501 1555 1555 2.32 CRYST1 64.821 68.563 80.976 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012349 0.00000