HEADER GENE REGULATION 20-MAR-21 7EF2 TITLE CRYSTAL STRUCTURE OF MAIZE SHH2 SAWADEE DOMAIN IN COMPLEX WITH AN TITLE 2 H3K9ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HB TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2; COMPND 9 CHAIN: P, Q; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: 100279552, HB131, ZEAMMB73_ZM00001D005584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 13 ORGANISM_COMMON: MAIZE; SOURCE 14 ORGANISM_TAXID: 4577 KEYWDS SAWADEE DOMAIN, MAIZE, SHH2, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,J.DU REVDAT 2 29-NOV-23 7EF2 1 REMARK REVDAT 1 30-JUN-21 7EF2 0 JRNL AUTH Y.WANG,X.ZHOU,J.LUO,S.LV,R.LIU,X.DU,B.JIA,F.YUAN,H.ZHANG, JRNL AUTH 2 J.DU JRNL TITL RECOGNITION OF H3K9ME1 BY MAIZE RNA-DIRECTED DNA METHYLATION JRNL TITL 2 FACTOR SHH2. JRNL REF J INTEGR PLANT BIOL V. 63 1091 2021 JRNL REFN ISSN 1744-7909 JRNL PMID 33913587 JRNL DOI 10.1111/JIPB.13103 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6690 - 4.1572 0.98 2748 147 0.2097 0.2413 REMARK 3 2 4.1572 - 3.3010 1.00 2668 141 0.1871 0.2072 REMARK 3 3 3.3010 - 2.8841 1.00 2625 146 0.2139 0.2419 REMARK 3 4 2.8841 - 2.6205 1.00 2610 143 0.2299 0.2707 REMARK 3 5 2.6205 - 2.4328 1.00 2615 131 0.2393 0.2599 REMARK 3 6 2.4328 - 2.2894 1.00 2593 154 0.2253 0.2634 REMARK 3 7 2.2894 - 2.1748 1.00 2583 138 0.2200 0.2493 REMARK 3 8 2.1748 - 2.0801 1.00 2574 143 0.2451 0.2744 REMARK 3 9 2.0801 - 2.0001 0.96 2484 117 0.2468 0.2848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2523 REMARK 3 ANGLE : 0.733 3401 REMARK 3 CHIRALITY : 0.027 357 REMARK 3 PLANARITY : 0.003 450 REMARK 3 DIHEDRAL : 14.093 951 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3966 10.5162 -14.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.2795 T22: 0.3275 REMARK 3 T33: 0.2461 T12: -0.0642 REMARK 3 T13: -0.0102 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 8.4462 L22: 8.4330 REMARK 3 L33: 6.8995 L12: 6.2470 REMARK 3 L13: -3.0409 L23: -3.1467 REMARK 3 S TENSOR REMARK 3 S11: -0.0835 S12: 0.3111 S13: -0.0635 REMARK 3 S21: 0.1166 S22: 0.3353 S23: 0.4467 REMARK 3 S31: 0.4625 S32: -1.0206 S33: -0.2574 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3772 20.1217 -18.0459 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.1605 REMARK 3 T33: 0.1701 T12: 0.0105 REMARK 3 T13: -0.0080 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 7.9362 L22: 4.2729 REMARK 3 L33: 3.0570 L12: 0.6757 REMARK 3 L13: 2.1651 L23: 1.6896 REMARK 3 S TENSOR REMARK 3 S11: -0.0865 S12: 0.0385 S13: 0.5769 REMARK 3 S21: -0.4312 S22: -0.2125 S23: 0.0016 REMARK 3 S31: -0.4062 S32: 0.0491 S33: 0.2549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5107 17.2043 -27.4118 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.2294 REMARK 3 T33: 0.2004 T12: -0.0249 REMARK 3 T13: -0.0295 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.6139 L22: 4.6674 REMARK 3 L33: 6.9337 L12: 0.4117 REMARK 3 L13: 0.5727 L23: 1.6984 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: 0.2889 S13: 0.2973 REMARK 3 S21: -0.2271 S22: 0.2282 S23: -0.3036 REMARK 3 S31: -0.6367 S32: 0.0756 S33: -0.1432 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2020 13.1970 -15.7941 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.2011 REMARK 3 T33: 0.1982 T12: -0.0139 REMARK 3 T13: -0.0392 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.2592 L22: 4.3667 REMARK 3 L33: 2.4793 L12: -0.1345 REMARK 3 L13: 0.4908 L23: -2.5529 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.0988 S13: -0.0446 REMARK 3 S21: -0.3185 S22: 0.0423 S23: 0.2269 REMARK 3 S31: -0.0795 S32: -0.0962 S33: -0.1253 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4257 18.6436 -1.7286 REMARK 3 T TENSOR REMARK 3 T11: 0.1737 T22: 0.1927 REMARK 3 T33: 0.1968 T12: 0.0052 REMARK 3 T13: -0.0115 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 4.7952 L22: 3.9958 REMARK 3 L33: 6.0083 L12: -1.6693 REMARK 3 L13: 0.6850 L23: -2.0865 REMARK 3 S TENSOR REMARK 3 S11: -0.2440 S12: -0.1821 S13: 0.2610 REMARK 3 S21: 0.3809 S22: 0.1583 S23: -0.0298 REMARK 3 S31: -0.4583 S32: 0.0708 S33: 0.0379 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1770 18.0109 13.4991 REMARK 3 T TENSOR REMARK 3 T11: 0.7763 T22: 0.4917 REMARK 3 T33: 0.4000 T12: 0.1226 REMARK 3 T13: 0.2210 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 3.8880 L22: 2.0286 REMARK 3 L33: 2.1856 L12: 1.2980 REMARK 3 L13: 1.2349 L23: -1.2714 REMARK 3 S TENSOR REMARK 3 S11: -0.3660 S12: -1.5385 S13: 1.1878 REMARK 3 S21: 1.1141 S22: 0.4268 S23: 0.1739 REMARK 3 S31: -0.2741 S32: -0.1761 S33: -0.3002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7860 20.4152 -1.9991 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1856 REMARK 3 T33: 0.2510 T12: -0.0358 REMARK 3 T13: -0.0279 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 8.0883 L22: 7.1511 REMARK 3 L33: 6.4815 L12: 2.2759 REMARK 3 L13: -1.9597 L23: -3.4074 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: -0.2482 S13: 0.4126 REMARK 3 S21: 0.2451 S22: 0.0325 S23: -0.4448 REMARK 3 S31: -0.4007 S32: 0.5175 S33: -0.1411 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3147 19.2031 0.1613 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.2269 REMARK 3 T33: 0.1839 T12: 0.0333 REMARK 3 T13: 0.0200 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.1410 L22: 4.5711 REMARK 3 L33: 5.5297 L12: -0.6604 REMARK 3 L13: 0.5093 L23: 2.9899 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: -0.2314 S13: 0.2000 REMARK 3 S21: 0.1131 S22: 0.1442 S23: -0.1232 REMARK 3 S31: -0.3756 S32: 0.0741 S33: 0.0913 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6972 0.8556 3.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.3526 REMARK 3 T33: 0.3466 T12: -0.0193 REMARK 3 T13: 0.0490 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 4.8294 L22: 8.0348 REMARK 3 L33: 3.6562 L12: 3.7576 REMARK 3 L13: -3.7824 L23: -4.6035 REMARK 3 S TENSOR REMARK 3 S11: 0.2551 S12: -0.0210 S13: -0.3772 REMARK 3 S21: 0.7095 S22: 0.4387 S23: 0.5893 REMARK 3 S31: -0.3764 S32: -0.8824 S33: -0.6971 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9673 -8.1675 5.1986 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.3834 REMARK 3 T33: 0.2742 T12: 0.0039 REMARK 3 T13: 0.0568 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.7819 L22: 7.1651 REMARK 3 L33: 8.6814 L12: 5.2097 REMARK 3 L13: 3.0771 L23: 1.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: 0.0093 S13: -0.6533 REMARK 3 S21: -0.2749 S22: -0.1989 S23: -0.1196 REMARK 3 S31: 0.6482 S32: -0.5291 S33: 0.0636 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6723 -4.1984 15.2378 REMARK 3 T TENSOR REMARK 3 T11: 0.2758 T22: 0.4264 REMARK 3 T33: 0.3242 T12: -0.0353 REMARK 3 T13: 0.0193 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 4.1168 L22: 1.6727 REMARK 3 L33: 5.3722 L12: 2.1439 REMARK 3 L13: -2.1107 L23: -2.5982 REMARK 3 S TENSOR REMARK 3 S11: 0.3541 S12: -0.7502 S13: 0.3139 REMARK 3 S21: 0.4349 S22: -0.4678 S23: -0.1354 REMARK 3 S31: -0.5174 S32: 0.9679 S33: 0.0198 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8951 -12.2920 14.0557 REMARK 3 T TENSOR REMARK 3 T11: 0.3980 T22: 0.6912 REMARK 3 T33: 0.4106 T12: 0.1442 REMARK 3 T13: 0.0606 T23: 0.1351 REMARK 3 L TENSOR REMARK 3 L11: 4.2079 L22: 5.2362 REMARK 3 L33: 5.9230 L12: 0.6948 REMARK 3 L13: 0.2479 L23: -0.9502 REMARK 3 S TENSOR REMARK 3 S11: 0.3982 S12: -0.5189 S13: -0.2790 REMARK 3 S21: -0.0911 S22: -0.1499 S23: -1.2482 REMARK 3 S31: 0.8296 S32: 1.7342 S33: -0.0298 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6179 -3.9451 6.6526 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.2534 REMARK 3 T33: 0.2617 T12: 0.0056 REMARK 3 T13: 0.0645 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 3.3411 L22: 3.1038 REMARK 3 L33: 7.3892 L12: 0.1528 REMARK 3 L13: 2.3854 L23: -2.3203 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.3030 S13: 0.0582 REMARK 3 S21: -0.0615 S22: -0.0925 S23: -0.0294 REMARK 3 S31: -0.1688 S32: 0.0080 S33: -0.0455 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2503 -2.3421 -7.8441 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.3299 REMARK 3 T33: 0.3054 T12: 0.0081 REMARK 3 T13: 0.1310 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.5129 L22: 4.6197 REMARK 3 L33: 4.7158 L12: -0.2550 REMARK 3 L13: -0.1806 L23: -0.1297 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: 0.1207 S13: -0.5471 REMARK 3 S21: -0.3226 S22: -0.1400 S23: -0.4881 REMARK 3 S31: 0.2510 S32: 0.7448 S33: -0.0472 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9311 -1.9853 -14.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.2582 T22: 0.3008 REMARK 3 T33: 0.2992 T12: -0.0086 REMARK 3 T13: 0.0870 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 2.6566 L22: 3.4959 REMARK 3 L33: 5.3688 L12: -0.1570 REMARK 3 L13: 0.7201 L23: 1.8929 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.4329 S13: -0.2540 REMARK 3 S21: -0.7033 S22: -0.1568 S23: -0.0732 REMARK 3 S31: -0.3567 S32: 0.2287 S33: 0.0187 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9696 4.7003 -6.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.2622 REMARK 3 T33: 0.2511 T12: -0.0511 REMARK 3 T13: 0.0896 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 3.8102 L22: 3.1710 REMARK 3 L33: 4.9357 L12: 0.7874 REMARK 3 L13: 3.7735 L23: 1.0516 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.1977 S13: -0.2162 REMARK 3 S21: -0.0367 S22: 0.3597 S23: -0.2136 REMARK 3 S31: 0.0471 S32: 0.4699 S33: 0.0242 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 251 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7640 -2.7700 -10.2812 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2658 REMARK 3 T33: 0.2767 T12: -0.0053 REMARK 3 T13: 0.0919 T23: -0.1183 REMARK 3 L TENSOR REMARK 3 L11: 4.3756 L22: 2.6478 REMARK 3 L33: 5.7077 L12: 0.5400 REMARK 3 L13: -1.8304 L23: 1.0814 REMARK 3 S TENSOR REMARK 3 S11: -0.2866 S12: 0.4877 S13: -0.7163 REMARK 3 S21: -0.2670 S22: 0.3318 S23: -0.5801 REMARK 3 S31: 0.2510 S32: 0.0886 S33: 0.1220 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7553 -1.1432 -8.0686 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.3874 REMARK 3 T33: 0.4126 T12: -0.0830 REMARK 3 T13: 0.0010 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.1603 L22: 8.0131 REMARK 3 L33: 9.2036 L12: -2.0484 REMARK 3 L13: 3.9395 L23: -1.5946 REMARK 3 S TENSOR REMARK 3 S11: 0.2011 S12: 0.4351 S13: -0.4632 REMARK 3 S21: -0.5939 S22: -0.0048 S23: 1.1436 REMARK 3 S31: 0.4565 S32: -0.5872 S33: -0.2326 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 2 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7953 23.2286 -6.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.3724 REMARK 3 T33: 0.4213 T12: -0.0030 REMARK 3 T13: 0.0713 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 7.4718 L22: 9.4817 REMARK 3 L33: 6.1816 L12: -1.5228 REMARK 3 L13: -0.1521 L23: -3.4134 REMARK 3 S TENSOR REMARK 3 S11: 0.4313 S12: -0.8208 S13: -0.3607 REMARK 3 S21: 0.9861 S22: 0.1288 S23: 1.3663 REMARK 3 S31: -0.6536 S32: -0.1932 S33: -0.6083 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5914 -12.6049 -2.6053 REMARK 3 T TENSOR REMARK 3 T11: 0.5276 T22: 0.5339 REMARK 3 T33: 0.8010 T12: 0.0297 REMARK 3 T13: 0.0868 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 9.6196 L22: 7.5303 REMARK 3 L33: 1.8107 L12: 1.4921 REMARK 3 L13: 0.9663 L23: -2.3565 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: 0.6559 S13: -1.8072 REMARK 3 S21: -1.2482 S22: -0.1302 S23: -0.9349 REMARK 3 S31: 0.8944 S32: 1.6490 S33: 0.3716 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EF2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH7.5, 70% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.40550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.12700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.40550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.12700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 124 REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 ASN A 127 REMARK 465 PRO A 128 REMARK 465 VAL A 129 REMARK 465 GLU A 130 REMARK 465 ALA A 279 REMARK 465 THR A 280 REMARK 465 ASN A 281 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 LYS B 126 REMARK 465 ASN B 127 REMARK 465 PRO B 128 REMARK 465 VAL B 129 REMARK 465 GLU B 130 REMARK 465 HIS B 273 REMARK 465 ALA B 274 REMARK 465 ALA B 275 REMARK 465 ARG B 276 REMARK 465 ALA B 277 REMARK 465 ALA B 278 REMARK 465 ALA B 279 REMARK 465 THR B 280 REMARK 465 ASN B 281 REMARK 465 ALA P 1 REMARK 465 SER P 10 REMARK 465 ALA Q 1 REMARK 465 ARG Q 2 REMARK 465 SER Q 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 143 -10.89 -143.15 REMARK 500 ASP A 162 80.71 53.75 REMARK 500 ASP A 233 -158.13 -132.04 REMARK 500 ASP B 215 -23.08 94.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 699 DISTANCE = 7.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 HIS A 232 NE2 98.8 REMARK 620 3 CYS A 237 SG 128.5 121.4 REMARK 620 4 CYS A 239 SG 102.6 102.4 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 198 SG REMARK 620 2 HIS B 232 NE2 98.6 REMARK 620 3 CYS B 237 SG 112.8 109.4 REMARK 620 4 CYS B 239 SG 116.0 119.4 101.1 REMARK 620 N 1 2 3 DBREF 7EF2 A 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF2 B 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF2 P 1 10 UNP P69246 H32_MAIZE 2 11 DBREF 7EF2 Q 1 10 UNP P69246 H32_MAIZE 2 11 SEQADV 7EF2 SER A 124 UNP B7ZYP9 EXPRESSION TAG SEQADV 7EF2 GLY A 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQADV 7EF2 SER B 124 UNP B7ZYP9 EXPRESSION TAG SEQADV 7EF2 GLY B 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQRES 1 A 158 SER GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE SEQRES 2 A 158 GLU ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL SEQRES 3 A 158 ALA ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP SEQRES 4 A 158 PRO GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU SEQRES 5 A 158 GLU ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN SEQRES 6 A 158 ARG SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL SEQRES 7 A 158 LEU PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS SEQRES 8 A 158 ASP GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA SEQRES 9 A 158 GLN ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG SEQRES 10 A 158 PHE LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE SEQRES 11 A 158 VAL PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP SEQRES 12 A 158 TYR ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA SEQRES 13 A 158 THR ASN SEQRES 1 B 158 SER GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE SEQRES 2 B 158 GLU ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL SEQRES 3 B 158 ALA ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP SEQRES 4 B 158 PRO GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU SEQRES 5 B 158 GLU ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN SEQRES 6 B 158 ARG SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL SEQRES 7 B 158 LEU PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS SEQRES 8 B 158 ASP GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA SEQRES 9 B 158 GLN ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG SEQRES 10 B 158 PHE LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE SEQRES 11 B 158 VAL PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP SEQRES 12 B 158 TYR ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA SEQRES 13 B 158 THR ASN SEQRES 1 P 10 ALA ARG THR LYS GLN THR ALA ARG M3L SER SEQRES 1 Q 10 ALA ARG THR LYS GLN THR ALA ARG M3L SER MODRES 7EF2 M3L P 9 LYS MODIFIED RESIDUE MODRES 7EF2 M3L Q 9 LYS MODIFIED RESIDUE HET M3L P 9 12 HET M3L Q 9 12 HET ZN A 501 1 HET ZN B 501 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *204(H2 O) HELIX 1 AA1 GLY A 173 ASP A 177 5 5 HELIX 2 AA2 VAL A 182 CYS A 185 1 4 HELIX 3 AA3 GLU A 194 VAL A 201 5 8 HELIX 4 AA4 THR A 265 ALA A 275 1 11 HELIX 5 AA5 GLY B 173 ASP B 177 5 5 HELIX 6 AA6 VAL B 182 CYS B 185 1 4 HELIX 7 AA7 GLU B 194 VAL B 201 5 8 HELIX 8 AA8 THR B 265 LEU B 272 1 8 SHEET 1 AA1 5 GLU A 178 ASN A 181 0 SHEET 2 AA1 5 GLU A 164 PHE A 169 -1 N VAL A 167 O GLU A 178 SHEET 3 AA1 5 TRP A 146 ARG A 156 -1 N ARG A 156 O GLU A 164 SHEET 4 AA1 5 PHE A 136 LYS A 139 -1 N PHE A 136 O VAL A 149 SHEET 5 AA1 5 VAL A 186 GLN A 188 -1 O ARG A 187 N GLU A 137 SHEET 1 AA2 6 LEU A 191 PRO A 192 0 SHEET 2 AA2 6 VAL A 259 ARG A 261 -1 O ARG A 261 N LEU A 191 SHEET 3 AA2 6 LEU A 206 GLU A 212 -1 N LEU A 208 O CYS A 260 SHEET 4 AA2 6 ALA A 217 GLN A 228 -1 O TYR A 220 N CYS A 209 SHEET 5 AA2 6 ARG A 240 TYR A 245 -1 O ARG A 240 N GLN A 228 SHEET 6 AA2 6 GLU A 251 PRO A 255 -1 O GLU A 252 N VAL A 243 SHEET 1 AA3 5 GLU B 178 ASN B 181 0 SHEET 2 AA3 5 GLU B 164 PHE B 169 -1 N VAL B 167 O GLU B 178 SHEET 3 AA3 5 TRP B 146 ARG B 156 -1 N LEU B 153 O ARG B 166 SHEET 4 AA3 5 PHE B 136 LYS B 139 -1 N PHE B 136 O VAL B 149 SHEET 5 AA3 5 VAL B 186 GLN B 188 -1 O ARG B 187 N GLU B 137 SHEET 1 AA4 6 LEU B 191 PRO B 192 0 SHEET 2 AA4 6 VAL B 259 ARG B 261 -1 O ARG B 261 N LEU B 191 SHEET 3 AA4 6 LEU B 206 GLU B 212 -1 N LEU B 208 O CYS B 260 SHEET 4 AA4 6 ALA B 217 GLN B 228 -1 O LEU B 218 N GLN B 211 SHEET 5 AA4 6 ARG B 240 TYR B 245 -1 O ARG B 240 N GLN B 228 SHEET 6 AA4 6 GLU B 251 PRO B 255 -1 O GLU B 252 N VAL B 243 LINK C ARG P 8 N M3L P 9 1555 1555 1.33 LINK C ARG Q 8 N M3L Q 9 1555 1555 1.33 LINK SG CYS A 198 ZN ZN A 501 1555 1555 2.38 LINK NE2 HIS A 232 ZN ZN A 501 1555 1555 2.07 LINK SG CYS A 237 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 239 ZN ZN A 501 1555 1555 2.38 LINK SG CYS B 198 ZN ZN B 501 1555 1555 2.33 LINK NE2 HIS B 232 ZN ZN B 501 1555 1555 2.07 LINK SG CYS B 237 ZN ZN B 501 1555 1555 2.37 LINK SG CYS B 239 ZN ZN B 501 1555 1555 2.39 CRYST1 65.092 68.254 80.811 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015363 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012375 0.00000