HEADER GENE REGULATION 20-MAR-21 7EF3 TITLE CRYSTAL STRUCTURE OF MAIZE SHH2 SAWADEE DOMAIN IN COMPLEX WITH H3K9ME2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HB TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.2; COMPND 9 CHAIN: P, Q; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: 100279552, HB131, ZEAMMB73_ZM00001D005584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 13 ORGANISM_COMMON: MAIZE; SOURCE 14 ORGANISM_TAXID: 4577 KEYWDS SHH2, MAIZE, H3K9ME2, HISTONE, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.WANG,J.DU REVDAT 2 29-NOV-23 7EF3 1 REMARK REVDAT 1 30-JUN-21 7EF3 0 JRNL AUTH Y.WANG,X.ZHOU,J.LUO,S.LV,R.LIU,X.DU,B.JIA,F.YUAN,H.ZHANG, JRNL AUTH 2 J.DU JRNL TITL RECOGNITION OF H3K9ME1 BY MAIZE RNA-DIRECTED DNA METHYLATION JRNL TITL 2 FACTOR SHH2. JRNL REF J INTEGR PLANT BIOL V. 63 1091 2021 JRNL REFN ISSN 1744-7909 JRNL PMID 33913587 JRNL DOI 10.1111/JIPB.13103 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1300 - 4.1978 0.99 2654 114 0.2174 0.2756 REMARK 3 2 4.1978 - 3.3328 1.00 2507 149 0.1883 0.2251 REMARK 3 3 3.3328 - 2.9118 1.00 2513 134 0.2115 0.2579 REMARK 3 4 2.9118 - 2.6457 1.00 2500 137 0.2318 0.2850 REMARK 3 5 2.6457 - 2.4561 1.00 2462 124 0.2526 0.3677 REMARK 3 6 2.4561 - 2.3113 1.00 2467 140 0.2492 0.2919 REMARK 3 7 2.3113 - 2.1956 1.00 2454 142 0.2515 0.2637 REMARK 3 8 2.1956 - 2.1000 0.99 2425 143 0.2716 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2548 REMARK 3 ANGLE : 0.639 3432 REMARK 3 CHIRALITY : 0.026 360 REMARK 3 PLANARITY : 0.003 456 REMARK 3 DIHEDRAL : 13.844 960 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1948 10.5487 -14.3705 REMARK 3 T TENSOR REMARK 3 T11: 0.4079 T22: 0.3945 REMARK 3 T33: 0.4153 T12: -0.0038 REMARK 3 T13: -0.0203 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.3715 L22: 5.0173 REMARK 3 L33: 6.6849 L12: 4.6413 REMARK 3 L13: -2.2223 L23: -2.8052 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: 0.0269 S13: -0.1103 REMARK 3 S21: 0.2799 S22: 0.3654 S23: 0.0419 REMARK 3 S31: -0.3593 S32: -1.1544 S33: -0.2361 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1257 20.2510 -17.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.3886 T22: 0.2861 REMARK 3 T33: 0.4506 T12: 0.0113 REMARK 3 T13: -0.0447 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 4.7625 L22: 2.5546 REMARK 3 L33: 5.1561 L12: 0.3997 REMARK 3 L13: 1.3089 L23: 1.9880 REMARK 3 S TENSOR REMARK 3 S11: -0.2631 S12: -0.2663 S13: 0.8305 REMARK 3 S21: -0.4450 S22: -0.0862 S23: 0.1078 REMARK 3 S31: -0.2977 S32: 0.0723 S33: 0.0616 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3759 11.2256 -31.9088 REMARK 3 T TENSOR REMARK 3 T11: 0.6109 T22: 0.5844 REMARK 3 T33: 0.3567 T12: -0.1099 REMARK 3 T13: 0.0095 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 7.1786 L22: 5.0639 REMARK 3 L33: 6.8730 L12: -0.5413 REMARK 3 L13: -0.1108 L23: 1.4809 REMARK 3 S TENSOR REMARK 3 S11: -0.9098 S12: 1.1745 S13: 0.5149 REMARK 3 S21: -0.0113 S22: 0.9108 S23: -0.6885 REMARK 3 S31: -0.0349 S32: 0.7614 S33: -0.1424 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7793 22.6917 -23.3817 REMARK 3 T TENSOR REMARK 3 T11: 0.6305 T22: 0.3640 REMARK 3 T33: 0.4023 T12: -0.0240 REMARK 3 T13: 0.0374 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 9.0522 L22: 8.4457 REMARK 3 L33: 4.2268 L12: -2.1085 REMARK 3 L13: -0.2018 L23: 1.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.6258 S12: 0.0906 S13: 1.5028 REMARK 3 S21: -0.9285 S22: -0.2901 S23: -0.3985 REMARK 3 S31: -1.2422 S32: 0.1292 S33: 0.0145 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2019 13.1367 -15.7537 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.1935 REMARK 3 T33: 0.3100 T12: -0.0546 REMARK 3 T13: -0.0364 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 5.2987 L22: 5.1237 REMARK 3 L33: 9.6629 L12: -0.7269 REMARK 3 L13: 1.0016 L23: -1.4918 REMARK 3 S TENSOR REMARK 3 S11: -0.2747 S12: 0.1509 S13: -0.2814 REMARK 3 S21: -0.1713 S22: 0.0689 S23: -0.0944 REMARK 3 S31: 0.1180 S32: -0.3120 S33: 0.1553 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5096 18.2530 -1.4832 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.2666 REMARK 3 T33: 0.3321 T12: 0.0318 REMARK 3 T13: -0.0429 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 4.6134 L22: 4.3685 REMARK 3 L33: 4.2324 L12: -1.5726 REMARK 3 L13: 0.1748 L23: -1.0500 REMARK 3 S TENSOR REMARK 3 S11: -0.2472 S12: -0.3621 S13: 0.0491 REMARK 3 S21: 0.3127 S22: 0.1102 S23: -0.1658 REMARK 3 S31: -0.5063 S32: 0.1044 S33: -0.1256 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5930 17.5830 13.4893 REMARK 3 T TENSOR REMARK 3 T11: 0.8244 T22: 0.6928 REMARK 3 T33: 0.5228 T12: 0.2051 REMARK 3 T13: 0.1257 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 4.7824 L22: 4.2662 REMARK 3 L33: 3.4347 L12: -1.4904 REMARK 3 L13: 0.2026 L23: 0.3209 REMARK 3 S TENSOR REMARK 3 S11: -1.4823 S12: -1.4567 S13: 1.0869 REMARK 3 S21: 2.1317 S22: 0.7194 S23: 0.6525 REMARK 3 S31: 0.2974 S32: -0.7775 S33: -0.1184 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0355 19.9902 -1.7447 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.2630 REMARK 3 T33: 0.4199 T12: 0.0345 REMARK 3 T13: -0.0009 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 5.3538 L22: 7.3664 REMARK 3 L33: 4.0863 L12: 3.4596 REMARK 3 L13: -0.3725 L23: -4.8450 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.0663 S13: 0.3722 REMARK 3 S21: 0.1946 S22: 0.1065 S23: -0.4472 REMARK 3 S31: 0.0329 S32: 0.0209 S33: -0.1094 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3754 18.7303 0.3760 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.4249 REMARK 3 T33: 0.3565 T12: 0.0091 REMARK 3 T13: 0.0664 T23: -0.0588 REMARK 3 L TENSOR REMARK 3 L11: 1.2364 L22: 4.2136 REMARK 3 L33: 5.0318 L12: -0.7664 REMARK 3 L13: 1.6058 L23: 0.9503 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: 0.0369 S13: 0.3472 REMARK 3 S21: 0.1761 S22: 0.3800 S23: -0.2405 REMARK 3 S31: -0.4048 S32: 0.5410 S33: 0.1559 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8219 0.4250 2.8686 REMARK 3 T TENSOR REMARK 3 T11: 0.4692 T22: 0.4303 REMARK 3 T33: 0.5744 T12: -0.0384 REMARK 3 T13: 0.0967 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 6.2473 L22: 5.7563 REMARK 3 L33: 8.4328 L12: 0.5990 REMARK 3 L13: -1.3044 L23: -1.4303 REMARK 3 S TENSOR REMARK 3 S11: -0.5000 S12: -0.5530 S13: -0.6261 REMARK 3 S21: 0.6513 S22: -0.1243 S23: 0.6681 REMARK 3 S31: 0.8296 S32: -0.4481 S33: 0.2304 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8594 -8.6125 4.9873 REMARK 3 T TENSOR REMARK 3 T11: 0.5401 T22: 0.5093 REMARK 3 T33: 0.5061 T12: -0.0393 REMARK 3 T13: 0.0921 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 6.6042 L22: 5.2611 REMARK 3 L33: 6.3349 L12: 4.0729 REMARK 3 L13: 1.9804 L23: 0.7409 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.9938 S13: -1.3440 REMARK 3 S21: 0.1808 S22: 0.3080 S23: 0.0814 REMARK 3 S31: 0.6726 S32: -0.4910 S33: -0.2629 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6833 -4.4381 15.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.4775 T22: 0.5032 REMARK 3 T33: 0.4097 T12: -0.0538 REMARK 3 T13: -0.0585 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 5.5300 L22: 3.6928 REMARK 3 L33: 7.6063 L12: 2.3559 REMARK 3 L13: -2.4223 L23: -1.9346 REMARK 3 S TENSOR REMARK 3 S11: 0.1794 S12: -0.5351 S13: 0.2285 REMARK 3 S21: 0.3163 S22: -0.4102 S23: -0.0991 REMARK 3 S31: -0.6057 S32: 1.2890 S33: -0.4246 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8880 -12.5459 14.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.5601 T22: 0.7005 REMARK 3 T33: 0.6564 T12: 0.0468 REMARK 3 T13: 0.0337 T23: 0.1159 REMARK 3 L TENSOR REMARK 3 L11: 3.6742 L22: 5.7413 REMARK 3 L33: 7.6418 L12: -0.1171 REMARK 3 L13: 0.8604 L23: 0.5973 REMARK 3 S TENSOR REMARK 3 S11: 0.1474 S12: -0.2998 S13: -0.0833 REMARK 3 S21: -0.3185 S22: -0.2485 S23: -1.3914 REMARK 3 S31: 0.3063 S32: 2.0552 S33: 0.1127 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 178 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8942 -2.7439 -0.9336 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.3163 REMARK 3 T33: 0.3692 T12: -0.0070 REMARK 3 T13: 0.0410 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.7756 L22: 2.9400 REMARK 3 L33: 6.6494 L12: -0.3474 REMARK 3 L13: -0.1193 L23: -2.6983 REMARK 3 S TENSOR REMARK 3 S11: -0.1301 S12: 0.1239 S13: -0.3136 REMARK 3 S21: 0.0071 S22: -0.0356 S23: -0.2126 REMARK 3 S31: 0.2471 S32: 0.2786 S33: 0.0161 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 212 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5623 -7.2123 -2.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.4845 T22: 1.1645 REMARK 3 T33: 1.4046 T12: 0.1329 REMARK 3 T13: 0.1906 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 7.7286 L22: 1.3884 REMARK 3 L33: 4.7392 L12: 1.2114 REMARK 3 L13: 1.7585 L23: -2.0078 REMARK 3 S TENSOR REMARK 3 S11: 1.5346 S12: -0.0450 S13: -0.5729 REMARK 3 S21: -0.2457 S22: -0.1120 S23: -1.8456 REMARK 3 S31: 0.9698 S32: 1.6867 S33: -0.2283 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 218 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3482 1.9522 -6.9929 REMARK 3 T TENSOR REMARK 3 T11: 0.4485 T22: 0.3061 REMARK 3 T33: 0.4136 T12: -0.0291 REMARK 3 T13: 0.0074 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 4.1059 L22: 4.5023 REMARK 3 L33: 7.2249 L12: -0.6971 REMARK 3 L13: 0.6256 L23: 1.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.5557 S13: -0.0612 REMARK 3 S21: -0.8083 S22: -0.0367 S23: -0.0318 REMARK 3 S31: -0.5676 S32: 0.4921 S33: 0.2308 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4677 -5.8191 -22.9895 REMARK 3 T TENSOR REMARK 3 T11: 0.5413 T22: 0.5654 REMARK 3 T33: 0.4855 T12: -0.0352 REMARK 3 T13: 0.0166 T23: -0.1020 REMARK 3 L TENSOR REMARK 3 L11: 1.8818 L22: 8.8869 REMARK 3 L33: 6.9330 L12: -2.2772 REMARK 3 L13: -0.4278 L23: 2.7326 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.0194 S13: 0.0339 REMARK 3 S21: -0.6968 S22: -0.1481 S23: 0.5749 REMARK 3 S31: 0.1629 S32: -0.1958 S33: 0.3101 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 240 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8131 4.4686 -6.7173 REMARK 3 T TENSOR REMARK 3 T11: 0.3960 T22: 0.3410 REMARK 3 T33: 0.3775 T12: -0.0280 REMARK 3 T13: 0.0551 T23: -0.0763 REMARK 3 L TENSOR REMARK 3 L11: 6.2082 L22: 3.7054 REMARK 3 L33: 3.2573 L12: 1.1477 REMARK 3 L13: 3.8355 L23: -0.6575 REMARK 3 S TENSOR REMARK 3 S11: 0.2029 S12: 0.3125 S13: -0.3004 REMARK 3 S21: 0.1151 S22: 0.2597 S23: -0.1404 REMARK 3 S31: 0.2111 S32: 0.6204 S33: -0.3104 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 251 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5238 -2.7295 -9.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.4138 T22: 0.4552 REMARK 3 T33: 0.4365 T12: 0.0057 REMARK 3 T13: 0.1174 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 7.1431 L22: 4.3289 REMARK 3 L33: 7.0188 L12: 1.0092 REMARK 3 L13: -2.4321 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.1794 S13: -0.3666 REMARK 3 S21: -0.4923 S22: 0.1467 S23: -0.7164 REMARK 3 S31: 0.3174 S32: 0.3401 S33: 0.2967 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 263 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8049 -2.9102 -11.6644 REMARK 3 T TENSOR REMARK 3 T11: 0.5015 T22: 0.6466 REMARK 3 T33: 0.7667 T12: -0.0373 REMARK 3 T13: -0.0382 T23: -0.1217 REMARK 3 L TENSOR REMARK 3 L11: 6.2884 L22: 5.9394 REMARK 3 L33: 8.6743 L12: -1.6645 REMARK 3 L13: 2.0939 L23: 0.4944 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.8689 S13: -1.3309 REMARK 3 S21: -0.9973 S22: -0.2894 S23: 1.3108 REMARK 3 S31: 0.6750 S32: -1.5502 S33: -0.1763 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 2 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7303 22.8514 -6.6160 REMARK 3 T TENSOR REMARK 3 T11: 0.4755 T22: 0.4503 REMARK 3 T33: 0.5804 T12: -0.1021 REMARK 3 T13: 0.0153 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 4.3622 L22: 7.6965 REMARK 3 L33: 2.9369 L12: -1.9325 REMARK 3 L13: -0.7288 L23: -1.6934 REMARK 3 S TENSOR REMARK 3 S11: 0.1924 S12: -1.0607 S13: 0.1527 REMARK 3 S21: 0.1539 S22: 0.2443 S23: 0.3179 REMARK 3 S31: -0.6022 S32: -0.1367 S33: -0.8355 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 5 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0901 -11.9848 0.7818 REMARK 3 T TENSOR REMARK 3 T11: 1.4207 T22: 1.0151 REMARK 3 T33: 0.8394 T12: 0.3479 REMARK 3 T13: 0.0056 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 7.0629 L22: 5.8398 REMARK 3 L33: 2.8089 L12: 4.2415 REMARK 3 L13: -4.4697 L23: -2.8105 REMARK 3 S TENSOR REMARK 3 S11: 1.1412 S12: -0.8357 S13: -1.6636 REMARK 3 S21: -0.2234 S22: -0.8199 S23: -0.9389 REMARK 3 S31: -0.6674 S32: 0.8079 S33: 1.2935 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300020822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7EEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH7.5, 70% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.45300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.12550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.12550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.45300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 ASN A 127 REMARK 465 PRO A 128 REMARK 465 VAL A 129 REMARK 465 GLU A 130 REMARK 465 ALA A 279 REMARK 465 THR A 280 REMARK 465 ASN A 281 REMARK 465 GLY B 125 REMARK 465 LYS B 126 REMARK 465 ASN B 127 REMARK 465 PRO B 128 REMARK 465 VAL B 129 REMARK 465 GLU B 130 REMARK 465 ALA B 278 REMARK 465 ALA B 279 REMARK 465 THR B 280 REMARK 465 ASN B 281 REMARK 465 ALA P 1 REMARK 465 SER P 10 REMARK 465 ALA Q 1 REMARK 465 ARG Q 2 REMARK 465 THR Q 3 REMARK 465 LYS Q 4 REMARK 465 SER Q 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 162 81.95 50.75 REMARK 500 ASP B 162 82.33 54.04 REMARK 500 ASP B 233 -162.84 -119.23 REMARK 500 SER B 249 18.05 59.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 HIS A 232 NE2 93.0 REMARK 620 3 CYS A 237 SG 119.7 106.7 REMARK 620 4 CYS A 239 SG 117.2 120.4 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 198 SG REMARK 620 2 HIS B 232 NE2 94.2 REMARK 620 3 CYS B 237 SG 117.0 110.1 REMARK 620 4 CYS B 239 SG 113.4 115.4 106.6 REMARK 620 N 1 2 3 DBREF 7EF3 A 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF3 B 125 281 UNP B7ZYP9 B7ZYP9_MAIZE 125 281 DBREF 7EF3 P 1 10 UNP P69246 H32_MAIZE 2 11 DBREF 7EF3 Q 1 10 UNP P69246 H32_MAIZE 2 11 SEQADV 7EF3 GLY A 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQADV 7EF3 GLY B 235 UNP B7ZYP9 ARG 235 ENGINEERED MUTATION SEQRES 1 A 157 GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE GLU SEQRES 2 A 157 ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL ALA SEQRES 3 A 157 ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP PRO SEQRES 4 A 157 GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU GLU SEQRES 5 A 157 ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN ARG SEQRES 6 A 157 SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL LEU SEQRES 7 A 157 PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS ASP SEQRES 8 A 157 GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA GLN SEQRES 9 A 157 ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG PHE SEQRES 10 A 157 LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE VAL SEQRES 11 A 157 PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP TYR SEQRES 12 A 157 ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA THR SEQRES 13 A 157 ASN SEQRES 1 B 157 GLY LYS ASN PRO VAL GLU SER VAL SER VAL GLU PHE GLU SEQRES 2 B 157 ALA LYS SER ALA ARG ASP GLY ALA TRP TYR ASP VAL ALA SEQRES 3 B 157 ALA PHE LEU SER HIS ARG LEU PHE GLU SER GLY ASP PRO SEQRES 4 B 157 GLU VAL ARG VAL ARG PHE SER GLY PHE GLY ALA GLU GLU SEQRES 5 B 157 ASP GLU TRP ILE ASN VAL ARG LYS CYS VAL ARG GLN ARG SEQRES 6 B 157 SER LEU PRO CYS GLU ALA THR GLU CYS VAL ALA VAL LEU SEQRES 7 B 157 PRO GLY ASP LEU ILE LEU CYS PHE GLN GLU GLY LYS ASP SEQRES 8 B 157 GLN ALA LEU TYR TYR ASP ALA HIS VAL LEU ASP ALA GLN SEQRES 9 B 157 ARG ARG ARG HIS ASP VAL GLY GLY CYS ARG CYS ARG PHE SEQRES 10 B 157 LEU VAL ARG TYR ASP HIS ASP SER SER GLU GLU ILE VAL SEQRES 11 B 157 PRO LEU ARG LYS VAL CYS ARG ARG PRO GLU THR ASP TYR SEQRES 12 B 157 ARG LEU GLN ILE LEU HIS ALA ALA ARG ALA ALA ALA THR SEQRES 13 B 157 ASN SEQRES 1 P 10 ALA ARG THR LYS GLN THR ALA ARG MLY SER SEQRES 1 Q 10 ALA ARG THR LYS GLN THR ALA ARG MLY SER MODRES 7EF3 MLY P 9 LYS MODIFIED RESIDUE MODRES 7EF3 MLY Q 9 LYS MODIFIED RESIDUE HET MLY P 9 11 HET MLY Q 9 11 HET ZN A 501 1 HET ZN B 501 1 HETNAM MLY N-DIMETHYL-LYSINE HETNAM ZN ZINC ION FORMUL 3 MLY 2(C8 H18 N2 O2) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 GLY A 173 ASP A 177 5 5 HELIX 2 AA2 VAL A 182 CYS A 185 1 4 HELIX 3 AA3 GLU A 194 VAL A 201 5 8 HELIX 4 AA4 ARG A 262 GLU A 264 5 3 HELIX 5 AA5 THR A 265 ALA A 275 1 11 HELIX 6 AA6 GLY B 173 ASP B 177 5 5 HELIX 7 AA7 VAL B 182 CYS B 185 1 4 HELIX 8 AA8 GLU B 194 VAL B 201 5 8 HELIX 9 AA9 THR B 265 ALA B 275 1 11 SHEET 1 AA1 5 GLU A 178 ASN A 181 0 SHEET 2 AA1 5 GLU A 164 PHE A 169 -1 N VAL A 165 O ILE A 180 SHEET 3 AA1 5 TRP A 146 ARG A 156 -1 N LEU A 153 O ARG A 166 SHEET 4 AA1 5 PHE A 136 LYS A 139 -1 N ALA A 138 O TYR A 147 SHEET 5 AA1 5 VAL A 186 GLN A 188 -1 O ARG A 187 N GLU A 137 SHEET 1 AA2 6 LEU A 191 PRO A 192 0 SHEET 2 AA2 6 VAL A 259 ARG A 261 -1 O ARG A 261 N LEU A 191 SHEET 3 AA2 6 LEU A 206 GLU A 212 -1 N LEU A 208 O CYS A 260 SHEET 4 AA2 6 ALA A 217 GLN A 228 -1 O TYR A 220 N CYS A 209 SHEET 5 AA2 6 ARG A 240 TYR A 245 -1 O LEU A 242 N LEU A 225 SHEET 6 AA2 6 GLU A 251 PRO A 255 -1 O GLU A 252 N VAL A 243 SHEET 1 AA3 5 GLU B 178 ASN B 181 0 SHEET 2 AA3 5 GLU B 164 PHE B 169 -1 N VAL B 167 O GLU B 178 SHEET 3 AA3 5 TRP B 146 ARG B 156 -1 N LEU B 153 O ARG B 166 SHEET 4 AA3 5 PHE B 136 LYS B 139 -1 N PHE B 136 O VAL B 149 SHEET 5 AA3 5 VAL B 186 GLN B 188 -1 O ARG B 187 N GLU B 137 SHEET 1 AA4 6 LEU B 191 PRO B 192 0 SHEET 2 AA4 6 VAL B 259 ARG B 261 -1 O ARG B 261 N LEU B 191 SHEET 3 AA4 6 LEU B 206 GLU B 212 -1 N LEU B 208 O CYS B 260 SHEET 4 AA4 6 ALA B 217 GLN B 228 -1 O ALA B 222 N ILE B 207 SHEET 5 AA4 6 ARG B 240 TYR B 245 -1 O ARG B 240 N GLN B 228 SHEET 6 AA4 6 GLU B 251 PRO B 255 -1 O VAL B 254 N PHE B 241 LINK C ARG P 8 N MLY P 9 1555 1555 1.33 LINK C ARG Q 8 N MLY Q 9 1555 1555 1.32 LINK SG CYS A 198 ZN ZN A 501 1555 1555 2.42 LINK NE2 HIS A 232 ZN ZN A 501 1555 1555 2.34 LINK SG CYS A 237 ZN ZN A 501 1555 1555 2.42 LINK SG CYS A 239 ZN ZN A 501 1555 1555 2.41 LINK SG CYS B 198 ZN ZN B 501 1555 1555 2.41 LINK NE2 HIS B 232 ZN ZN B 501 1555 1555 2.28 LINK SG CYS B 237 ZN ZN B 501 1555 1555 2.33 LINK SG CYS B 239 ZN ZN B 501 1555 1555 2.42 CRYST1 64.906 67.370 80.251 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012461 0.00000