data_7EFD # _entry.id 7EFD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EFD ? ? WWPDB D_1300021330 ? ? EMDB EMD-31084 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details '1.77 A cryo-EM structure of Streptavidin using first 40 frames (corresponding to about 40e/A^2 total dose)' _pdbx_database_related.db_id EMD-31084 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7EFD _pdbx_database_status.recvd_initial_deposition_date 2021-03-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hiraizumi, M.' 1 ? 'Yamashita, K.' 2 ? 'Nishizawa, T.' 3 ? 'Kotecha, A.' 4 ? 'Nureki, O.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title '1.77 A cryo-EM structure of Streptavidin using first 40 frames (corresponding to about 40e/A^2 total dose)' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Hiraizumi, M.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7EFD _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Streptavidin 18849.672 1 ? ? ? ? 2 non-polymer syn BIOTIN 244.311 1 ? ? ? ? 3 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 LYS n 1 4 ILE n 1 5 VAL n 1 6 VAL n 1 7 ALA n 1 8 ALA n 1 9 ILE n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 LEU n 1 14 THR n 1 15 THR n 1 16 VAL n 1 17 SER n 1 18 ILE n 1 19 THR n 1 20 ALA n 1 21 SER n 1 22 ALA n 1 23 SER n 1 24 ALA n 1 25 ASP n 1 26 PRO n 1 27 SER n 1 28 LYS n 1 29 ASP n 1 30 SER n 1 31 LYS n 1 32 ALA n 1 33 GLN n 1 34 VAL n 1 35 SER n 1 36 ALA n 1 37 ALA n 1 38 GLU n 1 39 ALA n 1 40 GLY n 1 41 ILE n 1 42 THR n 1 43 GLY n 1 44 THR n 1 45 TRP n 1 46 TYR n 1 47 ASN n 1 48 GLN n 1 49 LEU n 1 50 GLY n 1 51 SER n 1 52 THR n 1 53 PHE n 1 54 ILE n 1 55 VAL n 1 56 THR n 1 57 ALA n 1 58 GLY n 1 59 ALA n 1 60 ASP n 1 61 GLY n 1 62 ALA n 1 63 LEU n 1 64 THR n 1 65 GLY n 1 66 THR n 1 67 TYR n 1 68 GLU n 1 69 SER n 1 70 ALA n 1 71 VAL n 1 72 GLY n 1 73 ASN n 1 74 ALA n 1 75 GLU n 1 76 SER n 1 77 ARG n 1 78 TYR n 1 79 VAL n 1 80 LEU n 1 81 THR n 1 82 GLY n 1 83 ARG n 1 84 TYR n 1 85 ASP n 1 86 SER n 1 87 ALA n 1 88 PRO n 1 89 ALA n 1 90 THR n 1 91 ASP n 1 92 GLY n 1 93 SER n 1 94 GLY n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 GLY n 1 99 TRP n 1 100 THR n 1 101 VAL n 1 102 ALA n 1 103 TRP n 1 104 LYS n 1 105 ASN n 1 106 ASN n 1 107 TYR n 1 108 ARG n 1 109 ASN n 1 110 ALA n 1 111 HIS n 1 112 SER n 1 113 ALA n 1 114 THR n 1 115 THR n 1 116 TRP n 1 117 SER n 1 118 GLY n 1 119 GLN n 1 120 TYR n 1 121 VAL n 1 122 GLY n 1 123 GLY n 1 124 ALA n 1 125 GLU n 1 126 ALA n 1 127 ARG n 1 128 ILE n 1 129 ASN n 1 130 THR n 1 131 GLN n 1 132 TRP n 1 133 LEU n 1 134 LEU n 1 135 THR n 1 136 SER n 1 137 GLY n 1 138 THR n 1 139 THR n 1 140 GLU n 1 141 ALA n 1 142 ASN n 1 143 ALA n 1 144 TRP n 1 145 LYS n 1 146 SER n 1 147 THR n 1 148 LEU n 1 149 VAL n 1 150 GLY n 1 151 HIS n 1 152 ASP n 1 153 THR n 1 154 PHE n 1 155 THR n 1 156 LYS n 1 157 VAL n 1 158 LYS n 1 159 PRO n 1 160 SER n 1 161 ALA n 1 162 ALA n 1 163 SER n 1 164 ILE n 1 165 ASP n 1 166 ALA n 1 167 ALA n 1 168 LYS n 1 169 LYS n 1 170 ALA n 1 171 GLY n 1 172 VAL n 1 173 ASN n 1 174 ASN n 1 175 GLY n 1 176 ASN n 1 177 PRO n 1 178 LEU n 1 179 ASP n 1 180 ALA n 1 181 VAL n 1 182 GLN n 1 183 GLN n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 183 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces avidinii' _entity_src_nat.pdbx_ncbi_taxonomy_id 1895 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAV_STRAV _struct_ref.pdbx_db_accession P22629 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRKIVVAAIAVSLTTVSITASASADPSKDSKAQVSAAEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVL TGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPS AASIDAAKKAGVNNGNPLDAVQQ ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7EFD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 183 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22629 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 183 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -23 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BTN non-polymer . BIOTIN ? 'C10 H16 N2 O3 S' 244.311 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EFD _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] -0.306 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.510 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.203 _refine.B_iso_max ? _refine.B_iso_mean 45.492 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.895 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7EFD _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.770 _refine.ls_d_res_low 76.255 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work 139383 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.000 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all 0.3492 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3492 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work 0.349 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'BABINET MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.053 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 3.828 _refine.overall_SU_ML 0.099 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall 0.6978 _refine.pdbx_average_fsc_work 0.6978 _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.028 0.012 986 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.027 0.018 865 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 0.410 0.100 1486 ? r_ext_dist_refined_d ? ? 'ELECTRON MICROSCOPY' ? 3.023 1.642 1350 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 2.308 1.578 1981 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 8.687 2.023 128 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 31.900 22.174 46 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 14.664 15.000 130 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 24.663 15.000 4 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.030 0.200 136 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.001 0.020 1167 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.020 245 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? 0.055 0.200 170 ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.050 0.200 1242 ? r_symmetry_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.100 0.200 694 ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? 0.040 0.200 906 ? r_symmetry_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? 0.028 0.200 108 ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.020 0.200 22 ? r_symmetry_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 0.040 0.200 70 ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? 0.028 0.200 12 ? r_symmetry_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? 6.309 4.482 512 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 6.310 4.478 511 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 9.977 6.722 640 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 9.972 6.728 641 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 7.110 5.014 474 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 7.102 5.018 475 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? 10.920 7.194 710 ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 10.913 7.197 711 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 26.566 214.505 2364 ? r_lrange_it ? ? 'ELECTRON MICROSCOPY' ? 26.775 214.090 2320 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON MICROSCOPY' 1.770 1.793 5236 . 0 5236 100.0000 . . . . . . . . . . . . . 40 . 0.202 . 'ELECTRON MICROSCOPY' 1.793 1.816 5188 . 0 5188 100.0000 . 0.719 . . . 0.719 . . . . . 0.719 . 40 . 0.237 . 'ELECTRON MICROSCOPY' 1.816 1.840 4939 . 0 4939 100.0000 . 0.649 . . . 0.649 . . . . . 0.649 . 40 . 0.343 . 'ELECTRON MICROSCOPY' 1.840 1.866 5046 . 0 5046 100.0000 . 0.663 . . . 0.663 . . . . . 0.663 . 40 . 0.355 . 'ELECTRON MICROSCOPY' 1.866 1.892 4956 . 0 4956 100.0000 . 0.657 . . . 0.657 . . . . . 0.657 . 40 . 0.409 . 'ELECTRON MICROSCOPY' 1.892 1.920 4833 . 0 4833 100.0000 . 0.597 . . . 0.597 . . . . . 0.597 . 40 . 0.439 . 'ELECTRON MICROSCOPY' 1.920 1.949 4716 . 0 4716 100.0000 . 0.597 . . . 0.597 . . . . . 0.597 . 40 . 0.469 . 'ELECTRON MICROSCOPY' 1.949 1.979 4785 . 0 4785 100.0000 . 0.527 . . . 0.527 . . . . . 0.527 . 40 . 0.521 . 'ELECTRON MICROSCOPY' 1.979 2.010 4627 . 0 4627 100.0000 . 0.476 . . . 0.476 . . . . . 0.476 . 40 . 0.615 . 'ELECTRON MICROSCOPY' 2.010 2.044 4521 . 0 4521 100.0000 . 0.458 . . . 0.458 . . . . . 0.458 . 40 . 0.648 . 'ELECTRON MICROSCOPY' 2.044 2.079 4484 . 0 4484 100.0000 . 0.448 . . . 0.448 . . . . . 0.448 . 40 . 0.673 . 'ELECTRON MICROSCOPY' 2.079 2.115 4448 . 0 4448 100.0000 . 0.424 . . . 0.424 . . . . . 0.424 . 40 . 0.707 . 'ELECTRON MICROSCOPY' 2.115 2.154 4259 . 0 4259 100.0000 . 0.403 . . . 0.403 . . . . . 0.403 . 40 . 0.733 . 'ELECTRON MICROSCOPY' 2.154 2.195 4277 . 0 4277 100.0000 . 0.410 . . . 0.410 . . . . . 0.410 . 40 . 0.742 . 'ELECTRON MICROSCOPY' 2.195 2.239 4168 . 0 4168 100.0000 . 0.388 . . . 0.388 . . . . . 0.388 . 40 . 0.784 . 'ELECTRON MICROSCOPY' 2.239 2.285 4055 . 0 4055 100.0000 . 0.382 . . . 0.382 . . . . . 0.382 . 40 . 0.780 . 'ELECTRON MICROSCOPY' 2.285 2.334 4019 . 0 4019 100.0000 . 0.388 . . . 0.388 . . . . . 0.388 . 40 . 0.816 . 'ELECTRON MICROSCOPY' 2.334 2.386 3969 . 0 3969 100.0000 . 0.349 . . . 0.349 . . . . . 0.349 . 40 . 0.835 . 'ELECTRON MICROSCOPY' 2.386 2.442 3796 . 0 3796 100.0000 . 0.350 . . . 0.350 . . . . . 0.350 . 40 . 0.839 . 'ELECTRON MICROSCOPY' 2.442 2.503 3765 . 0 3765 100.0000 . 0.335 . . . 0.335 . . . . . 0.335 . 40 . 0.854 . 'ELECTRON MICROSCOPY' 2.503 2.567 3616 . 0 3616 100.0000 . 0.321 . . . 0.321 . . . . . 0.321 . 40 . 0.863 . 'ELECTRON MICROSCOPY' 2.567 2.638 3530 . 0 3530 100.0000 . 0.326 . . . 0.326 . . . . . 0.326 . 40 . 0.873 . 'ELECTRON MICROSCOPY' 2.638 2.714 3490 . 0 3490 100.0000 . 0.296 . . . 0.296 . . . . . 0.296 . 40 . 0.885 . 'ELECTRON MICROSCOPY' 2.714 2.798 3338 . 0 3338 100.0000 . 0.285 . . . 0.285 . . . . . 0.285 . 40 . 0.909 . 'ELECTRON MICROSCOPY' 2.798 2.889 3327 . 0 3327 100.0000 . 0.277 . . . 0.277 . . . . . 0.277 . 40 . 0.921 . 'ELECTRON MICROSCOPY' 2.889 2.990 3132 . 0 3132 100.0000 . 0.272 . . . 0.272 . . . . . 0.272 . 40 . 0.926 . 'ELECTRON MICROSCOPY' 2.990 3.103 2993 . 0 2993 100.0000 . 0.253 . . . 0.253 . . . . . 0.253 . 40 . 0.933 . 'ELECTRON MICROSCOPY' 3.103 3.230 2889 . 0 2889 100.0000 . 0.235 . . . 0.235 . . . . . 0.235 . 40 . 0.942 . 'ELECTRON MICROSCOPY' 3.230 3.373 2873 . 0 2873 100.0000 . 0.250 . . . 0.250 . . . . . 0.250 . 40 . 0.937 . 'ELECTRON MICROSCOPY' 3.373 3.537 2634 . 0 2634 100.0000 . 0.244 . . . 0.244 . . . . . 0.244 . 40 . 0.942 . 'ELECTRON MICROSCOPY' 3.537 3.728 2547 . 0 2547 100.0000 . 0.229 . . . 0.229 . . . . . 0.229 . 40 . 0.946 . 'ELECTRON MICROSCOPY' 3.728 3.954 2409 . 0 2409 100.0000 . 0.225 . . . 0.225 . . . . . 0.225 . 40 . 0.943 . 'ELECTRON MICROSCOPY' 3.954 4.226 2283 . 0 2283 100.0000 . 0.253 . . . 0.253 . . . . . 0.253 . 40 . 0.940 . 'ELECTRON MICROSCOPY' 4.226 4.563 2092 . 0 2092 100.0000 . 0.237 . . . 0.237 . . . . . 0.237 . 40 . 0.949 . 'ELECTRON MICROSCOPY' 4.563 4.997 1935 . 0 1935 100.0000 . 0.257 . . . 0.257 . . . . . 0.257 . 40 . 0.941 . 'ELECTRON MICROSCOPY' 4.997 5.584 1761 . 0 1761 100.0000 . 0.284 . . . 0.284 . . . . . 0.284 . 40 . 0.915 . 'ELECTRON MICROSCOPY' 5.584 6.442 1551 . 0 1551 100.0000 . 0.443 . . . 0.443 . . . . . 0.443 . 40 . 0.843 . 'ELECTRON MICROSCOPY' 6.442 7.876 1292 . 0 1292 100.0000 . 0.536 . . . 0.536 . . . . . 0.536 . 40 . 0.818 . 'ELECTRON MICROSCOPY' 7.876 11.079 1034 . 0 1034 100.0000 . 0.445 . . . 0.445 . . . . . 0.445 . 40 . 0.847 . 'ELECTRON MICROSCOPY' 11.079 76.255 566 . 0 566 100.0000 . 0.728 . . . 0.728 . . . . . 0.728 . 40 . 0.911 . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.vector[2] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 1 0 0 0 0 1 0 0 0 0 1 0 ? 2 generate -1 0 0 111.051 0 -1 0 111.051 0 0 1 0 ? 3 generate 1 0 0 0 0 -1 0 111.051 0 0 -1 111.051 ? 4 generate -1 0 0 111.051 0 1 0 0 0 0 -1 111.051 ? # _struct.entry_id 7EFD _struct.title '1.77 A cryo-EM structure of Streptavidin using first 40 frames (corresponding to about 40 e/A^2 total dose)' _struct.pdbx_descriptor Streptavidin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EFD _struct_keywords.text 'STREPTAVIDIN, CYTOSOLIC PROTEIN' _struct_keywords.pdbx_keywords 'CYTOSOLIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 139 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 145 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 115 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 121 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 43 ? ASN A 47 ? GLY A 19 ASN A 23 AA1 2 THR A 52 ? ALA A 57 ? THR A 28 ALA A 33 AA1 3 ALA A 62 ? GLU A 68 ? ALA A 38 GLU A 44 AA1 4 ARG A 77 ? TYR A 84 ? ARG A 53 TYR A 60 AA1 5 THR A 95 ? LYS A 104 ? THR A 71 LYS A 80 AA1 6 ASN A 109 ? VAL A 121 ? ASN A 85 VAL A 97 AA1 7 ARG A 127 ? SER A 136 ? ARG A 103 SER A 112 AA1 8 THR A 147 ? THR A 155 ? THR A 123 THR A 131 AA1 9 GLY A 43 ? ASN A 47 ? GLY A 19 ASN A 23 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TRP A 45 ? N TRP A 21 O PHE A 53 ? O PHE A 29 AA1 2 3 N THR A 52 ? N THR A 28 O GLU A 68 ? O GLU A 44 AA1 3 4 N LEU A 63 ? N LEU A 39 O GLY A 82 ? O GLY A 58 AA1 4 5 N THR A 81 ? N THR A 57 O THR A 100 ? O THR A 76 AA1 5 6 N LEU A 97 ? N LEU A 73 O GLY A 118 ? O GLY A 94 AA1 6 7 N VAL A 121 ? N VAL A 97 O ARG A 127 ? O ARG A 103 AA1 7 8 N THR A 130 ? N THR A 106 O ASP A 152 ? O ASP A 128 AA1 8 9 O THR A 155 ? O THR A 131 N TYR A 46 ? N TYR A 22 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BTN _struct_site.pdbx_auth_seq_id 5100 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'binding site for residue BTN A 5100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ASN A 47 ? ASN A 23 . ? 1_555 ? 2 AC1 12 SER A 51 ? SER A 27 . ? 1_555 ? 3 AC1 12 TYR A 67 ? TYR A 43 . ? 1_555 ? 4 AC1 12 SER A 69 ? SER A 45 . ? 1_555 ? 5 AC1 12 VAL A 71 ? VAL A 47 . ? 1_555 ? 6 AC1 12 GLY A 72 ? GLY A 48 . ? 1_555 ? 7 AC1 12 ASN A 73 ? ASN A 49 . ? 1_555 ? 8 AC1 12 TRP A 103 ? TRP A 79 . ? 1_555 ? 9 AC1 12 SER A 112 ? SER A 88 . ? 1_555 ? 10 AC1 12 THR A 114 ? THR A 90 . ? 1_555 ? 11 AC1 12 TRP A 132 ? TRP A 108 . ? 1_555 ? 12 AC1 12 ASP A 152 ? ASP A 128 . ? 1_555 ? # _atom_sites.entry_id 7EFD _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -23 ? ? ? A . n A 1 2 ARG 2 -22 ? ? ? A . n A 1 3 LYS 3 -21 ? ? ? A . n A 1 4 ILE 4 -20 ? ? ? A . n A 1 5 VAL 5 -19 ? ? ? A . n A 1 6 VAL 6 -18 ? ? ? A . n A 1 7 ALA 7 -17 ? ? ? A . n A 1 8 ALA 8 -16 ? ? ? A . n A 1 9 ILE 9 -15 ? ? ? A . n A 1 10 ALA 10 -14 ? ? ? A . n A 1 11 VAL 11 -13 ? ? ? A . n A 1 12 SER 12 -12 ? ? ? A . n A 1 13 LEU 13 -11 ? ? ? A . n A 1 14 THR 14 -10 ? ? ? A . n A 1 15 THR 15 -9 ? ? ? A . n A 1 16 VAL 16 -8 ? ? ? A . n A 1 17 SER 17 -7 ? ? ? A . n A 1 18 ILE 18 -6 ? ? ? A . n A 1 19 THR 19 -5 ? ? ? A . n A 1 20 ALA 20 -4 ? ? ? A . n A 1 21 SER 21 -3 ? ? ? A . n A 1 22 ALA 22 -2 ? ? ? A . n A 1 23 SER 23 -1 ? ? ? A . n A 1 24 ALA 24 0 ? ? ? A . n A 1 25 ASP 25 1 ? ? ? A . n A 1 26 PRO 26 2 ? ? ? A . n A 1 27 SER 27 3 ? ? ? A . n A 1 28 LYS 28 4 ? ? ? A . n A 1 29 ASP 29 5 ? ? ? A . n A 1 30 SER 30 6 ? ? ? A . n A 1 31 LYS 31 7 ? ? ? A . n A 1 32 ALA 32 8 ? ? ? A . n A 1 33 GLN 33 9 ? ? ? A . n A 1 34 VAL 34 10 ? ? ? A . n A 1 35 SER 35 11 ? ? ? A . n A 1 36 ALA 36 12 ? ? ? A . n A 1 37 ALA 37 13 ? ? ? A . n A 1 38 GLU 38 14 ? ? ? A . n A 1 39 ALA 39 15 15 ALA ALA A . n A 1 40 GLY 40 16 16 GLY GLY A . n A 1 41 ILE 41 17 17 ILE ILE A . n A 1 42 THR 42 18 18 THR THR A . n A 1 43 GLY 43 19 19 GLY GLY A . n A 1 44 THR 44 20 20 THR THR A . n A 1 45 TRP 45 21 21 TRP TRP A . n A 1 46 TYR 46 22 22 TYR TYR A . n A 1 47 ASN 47 23 23 ASN ASN A . n A 1 48 GLN 48 24 24 GLN GLN A . n A 1 49 LEU 49 25 25 LEU LEU A . n A 1 50 GLY 50 26 26 GLY GLY A . n A 1 51 SER 51 27 27 SER SER A . n A 1 52 THR 52 28 28 THR THR A . n A 1 53 PHE 53 29 29 PHE PHE A . n A 1 54 ILE 54 30 30 ILE ILE A . n A 1 55 VAL 55 31 31 VAL VAL A . n A 1 56 THR 56 32 32 THR THR A . n A 1 57 ALA 57 33 33 ALA ALA A . n A 1 58 GLY 58 34 34 GLY GLY A . n A 1 59 ALA 59 35 35 ALA ALA A . n A 1 60 ASP 60 36 36 ASP ASP A . n A 1 61 GLY 61 37 37 GLY GLY A . n A 1 62 ALA 62 38 38 ALA ALA A . n A 1 63 LEU 63 39 39 LEU LEU A . n A 1 64 THR 64 40 40 THR THR A . n A 1 65 GLY 65 41 41 GLY GLY A . n A 1 66 THR 66 42 42 THR THR A . n A 1 67 TYR 67 43 43 TYR TYR A . n A 1 68 GLU 68 44 44 GLU GLU A . n A 1 69 SER 69 45 45 SER SER A . n A 1 70 ALA 70 46 46 ALA ALA A . n A 1 71 VAL 71 47 47 VAL VAL A . n A 1 72 GLY 72 48 48 GLY GLY A . n A 1 73 ASN 73 49 49 ASN ASN A . n A 1 74 ALA 74 50 50 ALA ALA A . n A 1 75 GLU 75 51 51 GLU GLU A . n A 1 76 SER 76 52 52 SER SER A . n A 1 77 ARG 77 53 53 ARG ARG A . n A 1 78 TYR 78 54 54 TYR TYR A . n A 1 79 VAL 79 55 55 VAL VAL A . n A 1 80 LEU 80 56 56 LEU LEU A . n A 1 81 THR 81 57 57 THR THR A . n A 1 82 GLY 82 58 58 GLY GLY A . n A 1 83 ARG 83 59 59 ARG ARG A . n A 1 84 TYR 84 60 60 TYR TYR A . n A 1 85 ASP 85 61 61 ASP ASP A . n A 1 86 SER 86 62 62 SER SER A . n A 1 87 ALA 87 63 63 ALA ALA A . n A 1 88 PRO 88 64 64 PRO PRO A . n A 1 89 ALA 89 65 65 ALA ALA A . n A 1 90 THR 90 66 66 THR THR A . n A 1 91 ASP 91 67 67 ASP ASP A . n A 1 92 GLY 92 68 68 GLY GLY A . n A 1 93 SER 93 69 69 SER SER A . n A 1 94 GLY 94 70 70 GLY GLY A . n A 1 95 THR 95 71 71 THR THR A . n A 1 96 ALA 96 72 72 ALA ALA A . n A 1 97 LEU 97 73 73 LEU LEU A . n A 1 98 GLY 98 74 74 GLY GLY A . n A 1 99 TRP 99 75 75 TRP TRP A . n A 1 100 THR 100 76 76 THR THR A . n A 1 101 VAL 101 77 77 VAL VAL A . n A 1 102 ALA 102 78 78 ALA ALA A . n A 1 103 TRP 103 79 79 TRP TRP A . n A 1 104 LYS 104 80 80 LYS LYS A . n A 1 105 ASN 105 81 81 ASN ASN A . n A 1 106 ASN 106 82 82 ASN ASN A . n A 1 107 TYR 107 83 83 TYR TYR A . n A 1 108 ARG 108 84 84 ARG ARG A . n A 1 109 ASN 109 85 85 ASN ASN A . n A 1 110 ALA 110 86 86 ALA ALA A . n A 1 111 HIS 111 87 87 HIS HIS A . n A 1 112 SER 112 88 88 SER SER A . n A 1 113 ALA 113 89 89 ALA ALA A . n A 1 114 THR 114 90 90 THR THR A . n A 1 115 THR 115 91 91 THR THR A . n A 1 116 TRP 116 92 92 TRP TRP A . n A 1 117 SER 117 93 93 SER SER A . n A 1 118 GLY 118 94 94 GLY GLY A . n A 1 119 GLN 119 95 95 GLN GLN A . n A 1 120 TYR 120 96 96 TYR TYR A . n A 1 121 VAL 121 97 97 VAL VAL A . n A 1 122 GLY 122 98 98 GLY GLY A . n A 1 123 GLY 123 99 99 GLY GLY A . n A 1 124 ALA 124 100 100 ALA ALA A . n A 1 125 GLU 125 101 101 GLU GLU A . n A 1 126 ALA 126 102 102 ALA ALA A . n A 1 127 ARG 127 103 103 ARG ARG A . n A 1 128 ILE 128 104 104 ILE ILE A . n A 1 129 ASN 129 105 105 ASN ASN A . n A 1 130 THR 130 106 106 THR THR A . n A 1 131 GLN 131 107 107 GLN GLN A . n A 1 132 TRP 132 108 108 TRP TRP A . n A 1 133 LEU 133 109 109 LEU LEU A . n A 1 134 LEU 134 110 110 LEU LEU A . n A 1 135 THR 135 111 111 THR THR A . n A 1 136 SER 136 112 112 SER SER A . n A 1 137 GLY 137 113 113 GLY GLY A . n A 1 138 THR 138 114 114 THR THR A . n A 1 139 THR 139 115 115 THR THR A . n A 1 140 GLU 140 116 116 GLU GLU A . n A 1 141 ALA 141 117 117 ALA ALA A . n A 1 142 ASN 142 118 118 ASN ASN A . n A 1 143 ALA 143 119 119 ALA ALA A . n A 1 144 TRP 144 120 120 TRP TRP A . n A 1 145 LYS 145 121 121 LYS LYS A . n A 1 146 SER 146 122 122 SER SER A . n A 1 147 THR 147 123 123 THR THR A . n A 1 148 LEU 148 124 124 LEU LEU A . n A 1 149 VAL 149 125 125 VAL VAL A . n A 1 150 GLY 150 126 126 GLY GLY A . n A 1 151 HIS 151 127 127 HIS HIS A . n A 1 152 ASP 152 128 128 ASP ASP A . n A 1 153 THR 153 129 129 THR THR A . n A 1 154 PHE 154 130 130 PHE PHE A . n A 1 155 THR 155 131 131 THR THR A . n A 1 156 LYS 156 132 132 LYS LYS A . n A 1 157 VAL 157 133 133 VAL VAL A . n A 1 158 LYS 158 134 134 LYS LYS A . n A 1 159 PRO 159 135 ? ? ? A . n A 1 160 SER 160 136 ? ? ? A . n A 1 161 ALA 161 137 ? ? ? A . n A 1 162 ALA 162 138 ? ? ? A . n A 1 163 SER 163 139 ? ? ? A . n A 1 164 ILE 164 140 ? ? ? A . n A 1 165 ASP 165 141 ? ? ? A . n A 1 166 ALA 166 142 ? ? ? A . n A 1 167 ALA 167 143 ? ? ? A . n A 1 168 LYS 168 144 ? ? ? A . n A 1 169 LYS 169 145 ? ? ? A . n A 1 170 ALA 170 146 ? ? ? A . n A 1 171 GLY 171 147 ? ? ? A . n A 1 172 VAL 172 148 ? ? ? A . n A 1 173 ASN 173 149 ? ? ? A . n A 1 174 ASN 174 150 ? ? ? A . n A 1 175 GLY 175 151 ? ? ? A . n A 1 176 ASN 176 152 ? ? ? A . n A 1 177 PRO 177 153 ? ? ? A . n A 1 178 LEU 178 154 ? ? ? A . n A 1 179 ASP 179 155 ? ? ? A . n A 1 180 ALA 180 156 ? ? ? A . n A 1 181 VAL 181 157 ? ? ? A . n A 1 182 GLN 182 158 ? ? ? A . n A 1 183 GLN 183 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN 1 5100 5100 BTN BTN A . C 3 HOH 1 5201 3 HOH HOH A . C 3 HOH 2 5202 37 HOH HOH A . C 3 HOH 3 5203 56 HOH HOH A . C 3 HOH 4 5204 10 HOH HOH A . C 3 HOH 5 5205 9 HOH HOH A . C 3 HOH 6 5206 16 HOH HOH A . C 3 HOH 7 5207 11 HOH HOH A . C 3 HOH 8 5208 36 HOH HOH A . C 3 HOH 9 5209 33 HOH HOH A . C 3 HOH 10 5210 5 HOH HOH A . C 3 HOH 11 5211 14 HOH HOH A . C 3 HOH 12 5212 4 HOH HOH A . C 3 HOH 13 5213 30 HOH HOH A . C 3 HOH 14 5214 22 HOH HOH A . C 3 HOH 15 5215 54 HOH HOH A . C 3 HOH 16 5216 53 HOH HOH A . C 3 HOH 17 5217 38 HOH HOH A . C 3 HOH 18 5218 25 HOH HOH A . C 3 HOH 19 5219 17 HOH HOH A . C 3 HOH 20 5220 13 HOH HOH A . C 3 HOH 21 5221 61 HOH HOH A . C 3 HOH 22 5222 24 HOH HOH A . C 3 HOH 23 5223 1 HOH HOH A . C 3 HOH 24 5224 28 HOH HOH A . C 3 HOH 25 5225 52 HOH HOH A . C 3 HOH 26 5226 51 HOH HOH A . C 3 HOH 27 5227 8 HOH HOH A . C 3 HOH 28 5228 43 HOH HOH A . C 3 HOH 29 5229 35 HOH HOH A . C 3 HOH 30 5230 57 HOH HOH A . C 3 HOH 31 5231 6 HOH HOH A . C 3 HOH 32 5232 42 HOH HOH A . C 3 HOH 33 5233 34 HOH HOH A . C 3 HOH 34 5234 50 HOH HOH A . C 3 HOH 35 5235 58 HOH HOH A . C 3 HOH 36 5236 27 HOH HOH A . C 3 HOH 37 5237 12 HOH HOH A . C 3 HOH 38 5238 31 HOH HOH A . C 3 HOH 39 5239 48 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete point assembly' ? tetrameric 4 2 'point asymmetric unit' ? monomeric 1 3 'point asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-4)' A,B,C 2 1 A,B,C 3 P A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000000 -1.00000000 0.00000000 55.52550 0.00000000 0.00000000 1.00000000 -55.52550 -1.00000000 0.00000000 0.00000000 55.52550 1 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 111.05100 0.00000000 0.00000000 -1.00000000 111.05100 3 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 111.05100 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 111.05100 4 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 111.05100 0.00000000 -1.00000000 0.00000000 111.05100 0.00000000 0.00000000 1.00000000 0.00000 # _pdbx_point_symmetry.entry_id 7EFD _pdbx_point_symmetry.Schoenflies_symbol D _pdbx_point_symmetry.circular_symmetry 2 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-04-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0272 _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7EFD _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # _em_3d_fitting.entry_id 7EFD _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.details _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.pdb_entry_id 1 1 ? M ? 5N7X 1 2 ? A ? 1MK5 # _em_3d_reconstruction.entry_id 7EFD _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 153976 _em_3d_reconstruction.resolution 1.77 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Streptavidin _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7EFD _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'UltrAuFoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7EFD _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7EFD _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7EFD _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry D2 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A THR 42 ? ? O A THR 42 ? ? 1.353 1.229 0.124 0.019 N 2 1 CG A TYR 83 ? ? CD2 A TYR 83 ? ? 1.471 1.387 0.084 0.013 N 3 1 CG A TYR 83 ? ? CD1 A TYR 83 ? ? 1.465 1.387 0.078 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A THR 28 ? ? CB A THR 28 ? ? CG2 A THR 28 ? ? 123.23 112.40 10.83 1.40 N 2 1 CB A PHE 29 ? ? CA A PHE 29 ? ? C A PHE 29 ? ? 124.51 110.40 14.11 2.00 N 3 1 CB A SER 52 ? A CA A SER 52 ? A C A SER 52 ? A 123.28 110.10 13.18 1.90 N 4 1 CB A ASP 61 ? ? CG A ASP 61 ? ? OD1 A ASP 61 ? ? 124.04 118.30 5.74 0.90 N 5 1 CE2 A TRP 79 ? ? CD2 A TRP 79 ? ? CG A TRP 79 ? ? 102.49 107.30 -4.81 0.80 N 6 1 CB A ASN 81 ? ? CA A ASN 81 ? ? C A ASN 81 ? ? 123.17 110.40 12.77 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 46 ? B -28.39 -25.87 2 1 SER A 52 ? A 75.68 -147.03 3 1 THR A 66 ? ? -103.49 52.76 4 1 ASN A 81 ? ? -125.42 -165.86 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -23 ? A MET 1 2 1 Y 1 A ARG -22 ? A ARG 2 3 1 Y 1 A LYS -21 ? A LYS 3 4 1 Y 1 A ILE -20 ? A ILE 4 5 1 Y 1 A VAL -19 ? A VAL 5 6 1 Y 1 A VAL -18 ? A VAL 6 7 1 Y 1 A ALA -17 ? A ALA 7 8 1 Y 1 A ALA -16 ? A ALA 8 9 1 Y 1 A ILE -15 ? A ILE 9 10 1 Y 1 A ALA -14 ? A ALA 10 11 1 Y 1 A VAL -13 ? A VAL 11 12 1 Y 1 A SER -12 ? A SER 12 13 1 Y 1 A LEU -11 ? A LEU 13 14 1 Y 1 A THR -10 ? A THR 14 15 1 Y 1 A THR -9 ? A THR 15 16 1 Y 1 A VAL -8 ? A VAL 16 17 1 Y 1 A SER -7 ? A SER 17 18 1 Y 1 A ILE -6 ? A ILE 18 19 1 Y 1 A THR -5 ? A THR 19 20 1 Y 1 A ALA -4 ? A ALA 20 21 1 Y 1 A SER -3 ? A SER 21 22 1 Y 1 A ALA -2 ? A ALA 22 23 1 Y 1 A SER -1 ? A SER 23 24 1 Y 1 A ALA 0 ? A ALA 24 25 1 Y 1 A ASP 1 ? A ASP 25 26 1 Y 1 A PRO 2 ? A PRO 26 27 1 Y 1 A SER 3 ? A SER 27 28 1 Y 1 A LYS 4 ? A LYS 28 29 1 Y 1 A ASP 5 ? A ASP 29 30 1 Y 1 A SER 6 ? A SER 30 31 1 Y 1 A LYS 7 ? A LYS 31 32 1 Y 1 A ALA 8 ? A ALA 32 33 1 Y 1 A GLN 9 ? A GLN 33 34 1 Y 1 A VAL 10 ? A VAL 34 35 1 Y 1 A SER 11 ? A SER 35 36 1 Y 1 A ALA 12 ? A ALA 36 37 1 Y 1 A ALA 13 ? A ALA 37 38 1 Y 1 A GLU 14 ? A GLU 38 39 1 Y 1 A PRO 135 ? A PRO 159 40 1 Y 1 A SER 136 ? A SER 160 41 1 Y 1 A ALA 137 ? A ALA 161 42 1 Y 1 A ALA 138 ? A ALA 162 43 1 Y 1 A SER 139 ? A SER 163 44 1 Y 1 A ILE 140 ? A ILE 164 45 1 Y 1 A ASP 141 ? A ASP 165 46 1 Y 1 A ALA 142 ? A ALA 166 47 1 Y 1 A ALA 143 ? A ALA 167 48 1 Y 1 A LYS 144 ? A LYS 168 49 1 Y 1 A LYS 145 ? A LYS 169 50 1 Y 1 A ALA 146 ? A ALA 170 51 1 Y 1 A GLY 147 ? A GLY 171 52 1 Y 1 A VAL 148 ? A VAL 172 53 1 Y 1 A ASN 149 ? A ASN 173 54 1 Y 1 A ASN 150 ? A ASN 174 55 1 Y 1 A GLY 151 ? A GLY 175 56 1 Y 1 A ASN 152 ? A ASN 176 57 1 Y 1 A PRO 153 ? A PRO 177 58 1 Y 1 A LEU 154 ? A LEU 178 59 1 Y 1 A ASP 155 ? A ASP 179 60 1 Y 1 A ALA 156 ? A ALA 180 61 1 Y 1 A VAL 157 ? A VAL 181 62 1 Y 1 A GLN 158 ? A GLN 182 63 1 Y 1 A GLN 159 ? A GLN 183 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1895 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Streptomyces avidinii' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 70 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4053 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1.13 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? MOLREP ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3.1 1 ? ? 13 'MODEL REFINEMENT' ? REFMAC 5.8.0272 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BIOTIN BTN 3 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #