HEADER TRANSFERASE 30-MAR-21 7EHR TITLE LEVANSUCRASE FROM BRENNERIA SP. ENID 312 AT 1.33 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRENNERIA SP. ENID312; SOURCE 3 ORGANISM_TAXID: 598467; SOURCE 4 GENE: BRE312_3941; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEVANSUCRASE, FRUCTOSYLTRANSFERASE, LEVAN SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XU,D.W.NI,X.D.HOU,Y.J.RAO,T.PIJNING,A.GUSKOV,W.M.MU REVDAT 4 29-NOV-23 7EHR 1 REMARK REVDAT 3 11-MAY-22 7EHR 1 JRNL REVDAT 2 27-APR-22 7EHR 1 JRNL REVDAT 1 20-APR-22 7EHR 0 JRNL AUTH W.XU,D.NI,X.HOU,T.PIJNING,A.GUSKOV,Y.RAO,W.MU JRNL TITL CRYSTAL STRUCTURE OF LEVANSUCRASE FROM THE GRAM-NEGATIVE JRNL TITL 2 BACTERIUM BRENNERIA PROVIDES INSIGHTS INTO ITS PRODUCT SIZE JRNL TITL 3 SPECIFICITY. JRNL REF J.AGRIC.FOOD CHEM. V. 70 5095 2022 JRNL REFN ESSN 1520-5118 JRNL PMID 35388691 JRNL DOI 10.1021/ACS.JAFC.2C01225 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 138038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2001 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 21.02 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 491 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3639 ; 0.014 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 3258 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4941 ; 1.685 ; 1.859 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7602 ; 1.171 ; 2.863 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 6.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;32.561 ;24.121 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 530 ;12.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4046 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1739 ; 1.452 ; 1.657 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1738 ; 1.421 ; 1.654 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2197 ; 1.863 ; 2.491 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2198 ; 1.863 ; 2.494 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1900 ; 2.193 ; 2.095 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1885 ; 2.189 ; 2.088 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2720 ; 2.618 ; 2.959 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4012 ; 3.454 ;21.617 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3891 ; 3.013 ;20.685 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6897 ; 2.676 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EHR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300019877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 84.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 36.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.5 REMARK 200 DATA REDUNDANCY IN SHELL : 16.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4D47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.17967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 142.35933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.76950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 177.94917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.58983 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.17967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 142.35933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 177.94917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.76950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.58983 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 883 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1056 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 TYR A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ILE A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 LYS A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 512 O HOH A 601 2.02 REMARK 500 CD2 PHE A 329 O HOH A 666 2.05 REMARK 500 O HOH A 690 O HOH A 978 2.10 REMARK 500 O HOH A 731 O HOH A 986 2.13 REMARK 500 O1 PGE A 503 O HOH A 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 747 O HOH A 762 9554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 MET A 124 CG - SD - CE ANGL. DEV. = 19.5 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 MET A 239 CG - SD - CE ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 67 -105.81 -142.38 REMARK 500 THR A 174 109.02 83.78 REMARK 500 PHE A 223 96.47 -160.77 REMARK 500 THR A 276 37.44 -140.49 REMARK 500 VAL A 304 -51.22 -124.98 REMARK 500 ARG A 310 55.93 37.32 REMARK 500 ASP A 389 -81.66 -97.75 REMARK 500 ASP A 389 -83.75 -97.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1087 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1089 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1090 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1091 DISTANCE = 7.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 517 DBREF 7EHR A 1 437 UNP G7LSK3 G7LSK3_9GAMM 1 437 SEQADV 7EHR HIS A 438 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHR HIS A 439 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHR HIS A 440 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHR HIS A 441 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHR HIS A 442 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHR HIS A 443 UNP G7LSK3 EXPRESSION TAG SEQRES 1 A 443 MET SER GLU LEU TYR GLN ALA LYS SER GLU THR ARG SER SEQRES 2 A 443 THR ILE THR SER SER LEU LYS GLY ILE GLN PRO TYR LYS SEQRES 3 A 443 PRO THR LYS ALA THR ILE TRP SER ARG ALA ASP ALA LEU SEQRES 4 A 443 LYS VAL ASN GLU TYR ASP PRO THR THR THR GLN PRO LEU SEQRES 5 A 443 VAL SER GLY ASP PHE PRO VAL MET SER ASP GLU VAL PHE SEQRES 6 A 443 ILE TRP ASP THR MET PRO LEU ARG ASP ILE ASP GLY ASN SEQRES 7 A 443 ILE ALA SER VAL ASN GLY TRP SER VAL ILE PHE THR LEU SEQRES 8 A 443 THR ALA ASP ARG ASN PRO THR ALA PRO GLU TYR GLN ASP SEQRES 9 A 443 GLU GLN GLY ASN TYR ASP ILE THR LEU ASP TRP ASN ASP SEQRES 10 A 443 ARG HIS GLY ARG ALA LYS MET TYR PHE TRP TYR SER ARG SEQRES 11 A 443 THR GLY LYS ASP TRP ILE ILE GLY GLY ARG VAL MET ALA SEQRES 12 A 443 GLU GLY VAL SER PRO THR ALA ARG GLU TRP ALA GLY THR SEQRES 13 A 443 PRO VAL LEU LEU ASN GLU ARG GLY GLU ILE ASP LEU TYR SEQRES 14 A 443 TYR THR ALA VAL THR PRO GLY ALA THR VAL VAL LYS VAL SEQRES 15 A 443 ARG GLY ARG VAL VAL THR THR GLU ASN GLY VAL GLU MET SEQRES 16 A 443 VAL GLY PHE LYS LYS VAL LYS SER LEU PHE GLU ALA ASP SEQRES 17 A 443 GLY LYS MET TYR GLN THR GLU SER GLN ASN PRO TYR TRP SEQRES 18 A 443 ALA PHE ARG ASP PRO CYS PRO PHE ARG ASP PRO LYS SER SEQRES 19 A 443 GLY LYS LEU TYR MET LEU PHE GLU GLY ASN VAL ALA GLY SEQRES 20 A 443 GLU ARG GLY SER HIS VAL VAL GLY PRO ASP GLU LEU GLY SEQRES 21 A 443 ASP VAL PRO PRO GLY TYR GLU ASP ALA GLY ASN SER HIS SEQRES 22 A 443 PHE GLN THR GLY CYS ILE GLY ILE ALA VAL CYS ARG ASP SEQRES 23 A 443 GLU ASP GLY ASP ASP TRP GLU LEU LEU PRO PRO LEU ILE SEQRES 24 A 443 THR ALA VAL GLY VAL ASN ASP GLN THR GLU ARG PRO HIS SEQRES 25 A 443 PHE VAL PHE GLN ASP GLY LYS TYR TYR LEU PHE THR ILE SEQRES 26 A 443 SER HIS LYS PHE THR TYR GLY ASP GLY LEU THR GLY PRO SEQRES 27 A 443 ASP GLY VAL TYR GLY PHE VAL SER GLU ASN LEU PHE GLY SEQRES 28 A 443 PRO TYR VAL PRO LEU ASN GLY SER GLY LEU VAL LEU GLY SEQRES 29 A 443 ASN PRO PRO SER GLN PRO TYR GLN THR TYR SER HIS TYR SEQRES 30 A 443 VAL MET PRO ASN GLY LEU VAL THR SER PHE ILE ASP SER SEQRES 31 A 443 VAL PRO THR GLY GLU ASP SER TYR ARG ILE GLY GLY THR SEQRES 32 A 443 GLU ALA PRO THR VAL LEU ILE LYS LEU LYS GLY ALA GLN SEQRES 33 A 443 THR PHE VAL LEU GLU GLU PHE ASP TYR GLY TYR ILE PRO SEQRES 34 A 443 PRO MET ILE ASP VAL LYS VAL GLU HIS HIS HIS HIS HIS SEQRES 35 A 443 HIS HET PGE A 501 10 HET PGE A 502 10 HET PGE A 503 10 HET PGE A 504 10 HET PEG A 505 7 HET PEG A 506 7 HET 1PE A 507 16 HET PE4 A 508 24 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 12 HET GOL A 512 6 HET GOL A 513 6 HET PO4 A 514 5 HET PO4 A 515 5 HET PO4 A 516 5 HET PO4 A 517 5 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN 1PE PEG400 HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PGE 4(C6 H14 O4) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 8 1PE C10 H22 O6 FORMUL 9 PE4 C16 H34 O8 FORMUL 10 GOL 5(C3 H8 O3) FORMUL 15 PO4 4(O4 P 3-) FORMUL 19 HOH *491(H2 O) HELIX 1 AA1 SER A 34 LEU A 39 1 6 HELIX 2 AA2 ASP A 45 THR A 49 5 5 HELIX 3 AA3 ALA A 99 GLN A 103 5 5 HELIX 4 AA4 ASP A 110 ASP A 117 1 8 HELIX 5 AA5 ARG A 118 ALA A 122 5 5 HELIX 6 AA6 GLY A 255 GLY A 260 1 6 HELIX 7 AA7 ASN A 271 GLN A 275 5 5 HELIX 8 AA8 ASN A 357 SER A 359 5 3 SHEET 1 AA1 5 THR A 31 ILE A 32 0 SHEET 2 AA1 5 TRP A 292 THR A 300 1 O LEU A 298 N THR A 31 SHEET 3 AA1 5 GLY A 277 CYS A 284 -1 N VAL A 283 O GLU A 293 SHEET 4 AA1 5 LEU A 237 ASN A 244 -1 N PHE A 241 O GLY A 280 SHEET 5 AA1 5 ARG A 224 ARG A 230 -1 N ARG A 224 O GLU A 242 SHEET 1 AA2 4 VAL A 64 PRO A 71 0 SHEET 2 AA2 4 TRP A 85 ASP A 94 -1 O PHE A 89 N MET A 70 SHEET 3 AA2 4 LYS A 123 SER A 129 -1 O SER A 129 N SER A 86 SHEET 4 AA2 4 ILE A 136 ARG A 140 -1 O ILE A 136 N TYR A 128 SHEET 1 AA3 4 VAL A 64 PRO A 71 0 SHEET 2 AA3 4 TRP A 85 ASP A 94 -1 O PHE A 89 N MET A 70 SHEET 3 AA3 4 ALA A 80 VAL A 82 -1 N VAL A 82 O TRP A 85 SHEET 4 AA3 4 ILE A 432 VAL A 434 1 O ILE A 432 N SER A 81 SHEET 1 AA4 4 ARG A 151 LEU A 159 0 SHEET 2 AA4 4 GLU A 165 VAL A 173 -1 O THR A 171 N TRP A 153 SHEET 3 AA4 4 ALA A 177 THR A 188 -1 O VAL A 182 N LEU A 168 SHEET 4 AA4 4 VAL A 193 VAL A 196 -1 O VAL A 196 N ARG A 185 SHEET 1 AA5 4 ARG A 151 LEU A 159 0 SHEET 2 AA5 4 GLU A 165 VAL A 173 -1 O THR A 171 N TRP A 153 SHEET 3 AA5 4 ALA A 177 THR A 188 -1 O VAL A 182 N LEU A 168 SHEET 4 AA5 4 VAL A 201 GLU A 206 -1 O LYS A 202 N LYS A 181 SHEET 1 AA6 4 GLU A 309 GLN A 316 0 SHEET 2 AA6 4 LYS A 319 SER A 326 -1 O PHE A 323 N HIS A 312 SHEET 3 AA6 4 GLY A 340 SER A 346 -1 O TYR A 342 N THR A 324 SHEET 4 AA6 4 VAL A 354 PRO A 355 -1 O VAL A 354 N VAL A 345 SHEET 1 AA7 4 GLU A 309 GLN A 316 0 SHEET 2 AA7 4 LYS A 319 SER A 326 -1 O PHE A 323 N HIS A 312 SHEET 3 AA7 4 GLY A 340 SER A 346 -1 O TYR A 342 N THR A 324 SHEET 4 AA7 4 LEU A 361 GLY A 364 -1 O VAL A 362 N VAL A 341 SHEET 1 AA8 3 THR A 373 VAL A 378 0 SHEET 2 AA8 3 LEU A 383 PRO A 392 -1 O THR A 385 N TYR A 377 SHEET 3 AA8 3 TYR A 398 GLU A 404 -1 O THR A 403 N ILE A 388 SHEET 1 AA9 4 THR A 373 VAL A 378 0 SHEET 2 AA9 4 LEU A 383 PRO A 392 -1 O THR A 385 N TYR A 377 SHEET 3 AA9 4 PRO A 406 LYS A 413 -1 O VAL A 408 N VAL A 384 SHEET 4 AA9 4 GLN A 416 TYR A 425 -1 O PHE A 423 N THR A 407 CISPEP 1 THR A 174 PRO A 175 0 -3.27 CISPEP 2 GLY A 351 PRO A 352 0 0.67 SITE 1 AC1 5 PRO A 367 SER A 368 PRO A 370 GLU A 395 SITE 2 AC1 5 SER A 397 SITE 1 AC2 4 PRO A 148 VAL A 201 SER A 216 HOH A 869 SITE 1 AC3 3 LYS A 29 TYR A 427 HOH A 602 SITE 1 AC4 4 GLU A 422 PHE A 423 GOL A 509 HOH A 776 SITE 1 AC5 3 ALA A 207 HOH A 626 HOH A 710 SITE 1 AC6 5 ARG A 35 ASP A 268 GLY A 334 HOH A 678 SITE 2 AC6 5 HOH A 834 SITE 1 AC7 8 HIS A 119 ARG A 151 TRP A 153 VAL A 173 SITE 2 AC7 8 PRO A 219 HOH A 765 HOH A 788 HOH A 921 SITE 1 AC8 13 ASN A 96 GLU A 101 TYR A 102 ASP A 117 SITE 2 AC8 13 ARG A 121 TYR A 220 ARG A 249 PHE A 274 SITE 3 AC8 13 GOL A 510 PO4 A 514 HOH A 634 HOH A 828 SITE 4 AC8 13 HOH A1088 SITE 1 AC9 8 LYS A 133 PHE A 423 ASP A 424 TYR A 427 SITE 2 AC9 8 PGE A 504 HOH A 700 HOH A 701 HOH A 783 SITE 1 AD1 8 TYR A 220 ARG A 249 PHE A 274 GLN A 275 SITE 2 AD1 8 ASP A 306 PE4 A 508 HOH A 604 HOH A 669 SITE 1 AD2 11 TRP A 85 SER A 129 ARG A 130 THR A 131 SITE 2 AD2 11 ASP A 134 ILE A 136 LYS A 210 MET A 211 SITE 3 AD2 11 HOH A 603 HOH A 674 HOH A 703 SITE 1 AD3 8 TRP A 67 ASP A 68 HIS A 119 TRP A 153 SITE 2 AD3 8 HOH A 601 HOH A 606 HOH A 633 HOH A 676 SITE 1 AD4 6 ASN A 83 ARG A 130 GLU A 190 TYR A 238 SITE 2 AD4 6 HOH A 680 HOH A 846 SITE 1 AD5 9 GLY A 120 ARG A 121 TYR A 220 ARG A 249 SITE 2 AD5 9 PE4 A 508 HOH A 689 HOH A 778 HOH A 801 SITE 3 AD5 9 HOH A 828 SITE 1 AD6 7 LYS A 123 TYR A 125 ARG A 140 HOH A 631 SITE 2 AD6 7 HOH A 682 HOH A 692 HOH A 855 SITE 1 AD7 6 MET A 195 VAL A 196 GLY A 197 LYS A 199 SITE 2 AD7 6 HOH A 815 HOH A 904 SITE 1 AD8 6 THR A 189 GLU A 190 ARG A 285 HOH A 651 SITE 2 AD8 6 HOH A 685 HOH A1082 CRYST1 98.000 98.000 213.539 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010204 0.005891 0.000000 0.00000 SCALE2 0.000000 0.011783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004683 0.00000