HEADER TRANSFERASE 30-MAR-21 7EHS TITLE LEVANSUCRASE FROM BRENNERIA SP. ENID 312 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEVANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.10; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRENNERIA SP. ENID312; SOURCE 3 ORGANISM_TAXID: 598467; SOURCE 4 GENE: BRE312_3941; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEVANSUCRASE, FRUCTOSYLTRANSFERASE, LEVAN SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.XU,D.W.NI,X.D.HOU,Y.J.RAO,T.PIJNING,A.GUSKOV,W.M.MU REVDAT 4 29-NOV-23 7EHS 1 REMARK REVDAT 3 11-MAY-22 7EHS 1 JRNL REVDAT 2 27-APR-22 7EHS 1 JRNL REVDAT 1 20-APR-22 7EHS 0 JRNL AUTH W.XU,D.NI,X.HOU,T.PIJNING,A.GUSKOV,Y.RAO,W.MU JRNL TITL CRYSTAL STRUCTURE OF LEVANSUCRASE FROM THE GRAM-NEGATIVE JRNL TITL 2 BACTERIUM BRENNERIA PROVIDES INSIGHTS INTO ITS PRODUCT SIZE JRNL TITL 3 SPECIFICITY. JRNL REF J.AGRIC.FOOD CHEM. V. 70 5095 2022 JRNL REFN ESSN 1520-5118 JRNL PMID 35388691 JRNL DOI 10.1021/ACS.JAFC.2C01225 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 69526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3686 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.430 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3593 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3238 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4881 ; 1.725 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7566 ; 1.443 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 7.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;30.552 ;22.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;13.078 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3968 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1300019935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80004 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 85.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 39.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4D47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.15833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.31667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.23750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 180.39583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.07917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.15833 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 144.31667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 180.39583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.23750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.07917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 786 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 TYR A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 THR A 14 REMARK 465 ILE A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 LYS A 20 REMARK 465 HIS A 439 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 631 O HOH A 801 2.04 REMARK 500 OD1 ASP A 291 O HOH A 601 2.10 REMARK 500 O HOH A 650 O HOH A 912 2.15 REMARK 500 O HOH A 625 O HOH A 987 2.16 REMARK 500 O2 GOL A 507 O HOH A 602 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 GOL A 513 O2 GOL A 513 10664 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 43 CD GLU A 43 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 310 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 310 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 67 -102.42 -138.84 REMARK 500 THR A 174 106.52 88.47 REMARK 500 VAL A 304 -56.05 -123.81 REMARK 500 ASP A 389 -78.94 -101.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1162 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1163 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 6.18 ANGSTROMS DBREF 7EHS A 1 437 UNP G7LSK3 G7LSK3_9GAMM 1 437 SEQADV 7EHS SER A 154 UNP G7LSK3 ALA 154 ENGINEERED MUTATION SEQADV 7EHS HIS A 438 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHS HIS A 439 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHS HIS A 440 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHS HIS A 441 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHS HIS A 442 UNP G7LSK3 EXPRESSION TAG SEQADV 7EHS HIS A 443 UNP G7LSK3 EXPRESSION TAG SEQRES 1 A 443 MET SER GLU LEU TYR GLN ALA LYS SER GLU THR ARG SER SEQRES 2 A 443 THR ILE THR SER SER LEU LYS GLY ILE GLN PRO TYR LYS SEQRES 3 A 443 PRO THR LYS ALA THR ILE TRP SER ARG ALA ASP ALA LEU SEQRES 4 A 443 LYS VAL ASN GLU TYR ASP PRO THR THR THR GLN PRO LEU SEQRES 5 A 443 VAL SER GLY ASP PHE PRO VAL MET SER ASP GLU VAL PHE SEQRES 6 A 443 ILE TRP ASP THR MET PRO LEU ARG ASP ILE ASP GLY ASN SEQRES 7 A 443 ILE ALA SER VAL ASN GLY TRP SER VAL ILE PHE THR LEU SEQRES 8 A 443 THR ALA ASP ARG ASN PRO THR ALA PRO GLU TYR GLN ASP SEQRES 9 A 443 GLU GLN GLY ASN TYR ASP ILE THR LEU ASP TRP ASN ASP SEQRES 10 A 443 ARG HIS GLY ARG ALA LYS MET TYR PHE TRP TYR SER ARG SEQRES 11 A 443 THR GLY LYS ASP TRP ILE ILE GLY GLY ARG VAL MET ALA SEQRES 12 A 443 GLU GLY VAL SER PRO THR ALA ARG GLU TRP SER GLY THR SEQRES 13 A 443 PRO VAL LEU LEU ASN GLU ARG GLY GLU ILE ASP LEU TYR SEQRES 14 A 443 TYR THR ALA VAL THR PRO GLY ALA THR VAL VAL LYS VAL SEQRES 15 A 443 ARG GLY ARG VAL VAL THR THR GLU ASN GLY VAL GLU MET SEQRES 16 A 443 VAL GLY PHE LYS LYS VAL LYS SER LEU PHE GLU ALA ASP SEQRES 17 A 443 GLY LYS MET TYR GLN THR GLU SER GLN ASN PRO TYR TRP SEQRES 18 A 443 ALA PHE ARG ASP PRO CYS PRO PHE ARG ASP PRO LYS SER SEQRES 19 A 443 GLY LYS LEU TYR MET LEU PHE GLU GLY ASN VAL ALA GLY SEQRES 20 A 443 GLU ARG GLY SER HIS VAL VAL GLY PRO ASP GLU LEU GLY SEQRES 21 A 443 ASP VAL PRO PRO GLY TYR GLU ASP ALA GLY ASN SER HIS SEQRES 22 A 443 PHE GLN THR GLY CYS ILE GLY ILE ALA VAL CYS ARG ASP SEQRES 23 A 443 GLU ASP GLY ASP ASP TRP GLU LEU LEU PRO PRO LEU ILE SEQRES 24 A 443 THR ALA VAL GLY VAL ASN ASP GLN THR GLU ARG PRO HIS SEQRES 25 A 443 PHE VAL PHE GLN ASP GLY LYS TYR TYR LEU PHE THR ILE SEQRES 26 A 443 SER HIS LYS PHE THR TYR GLY ASP GLY LEU THR GLY PRO SEQRES 27 A 443 ASP GLY VAL TYR GLY PHE VAL SER GLU ASN LEU PHE GLY SEQRES 28 A 443 PRO TYR VAL PRO LEU ASN GLY SER GLY LEU VAL LEU GLY SEQRES 29 A 443 ASN PRO PRO SER GLN PRO TYR GLN THR TYR SER HIS TYR SEQRES 30 A 443 VAL MET PRO ASN GLY LEU VAL THR SER PHE ILE ASP SER SEQRES 31 A 443 VAL PRO THR GLY GLU ASP SER TYR ARG ILE GLY GLY THR SEQRES 32 A 443 GLU ALA PRO THR VAL LEU ILE LYS LEU LYS GLY ALA GLN SEQRES 33 A 443 THR PHE VAL LEU GLU GLU PHE ASP TYR GLY TYR ILE PRO SEQRES 34 A 443 PRO MET ILE ASP VAL LYS VAL GLU HIS HIS HIS HIS HIS SEQRES 35 A 443 HIS HET PO4 A 501 5 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 12 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET GOL A 516 6 HET 2PE A 517 28 HET PGE A 518 10 HET PGE A 519 10 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM 2PE NONAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 GOL 15(C3 H8 O3) FORMUL 18 2PE C18 H38 O10 FORMUL 19 PGE 2(C6 H14 O4) FORMUL 21 HOH *564(H2 O) HELIX 1 AA1 SER A 34 LYS A 40 1 7 HELIX 2 AA2 ASP A 45 THR A 49 5 5 HELIX 3 AA3 ALA A 99 GLN A 103 5 5 HELIX 4 AA4 ASP A 110 ASP A 117 1 8 HELIX 5 AA5 ARG A 118 ALA A 122 5 5 HELIX 6 AA6 GLY A 255 GLY A 260 1 6 HELIX 7 AA7 ASN A 271 GLN A 275 5 5 HELIX 8 AA8 HIS A 327 TYR A 331 5 5 SHEET 1 AA1 5 THR A 31 ILE A 32 0 SHEET 2 AA1 5 TRP A 292 THR A 300 1 O LEU A 298 N THR A 31 SHEET 3 AA1 5 GLY A 277 CYS A 284 -1 N VAL A 283 O GLU A 293 SHEET 4 AA1 5 LEU A 237 ASN A 244 -1 N PHE A 241 O GLY A 280 SHEET 5 AA1 5 ARG A 224 ARG A 230 -1 N ARG A 224 O GLU A 242 SHEET 1 AA2 4 VAL A 64 PRO A 71 0 SHEET 2 AA2 4 TRP A 85 ASP A 94 -1 O ALA A 93 N PHE A 65 SHEET 3 AA2 4 LYS A 123 SER A 129 -1 O SER A 129 N SER A 86 SHEET 4 AA2 4 ILE A 136 ARG A 140 -1 O GLY A 138 N PHE A 126 SHEET 1 AA3 4 VAL A 64 PRO A 71 0 SHEET 2 AA3 4 TRP A 85 ASP A 94 -1 O ALA A 93 N PHE A 65 SHEET 3 AA3 4 ALA A 80 VAL A 82 -1 N VAL A 82 O TRP A 85 SHEET 4 AA3 4 ILE A 432 VAL A 434 1 O ILE A 432 N SER A 81 SHEET 1 AA4 4 ARG A 151 LEU A 159 0 SHEET 2 AA4 4 GLU A 165 VAL A 173 -1 O THR A 171 N TRP A 153 SHEET 3 AA4 4 ALA A 177 THR A 188 -1 O VAL A 182 N LEU A 168 SHEET 4 AA4 4 VAL A 193 VAL A 196 -1 O VAL A 196 N ARG A 185 SHEET 1 AA5 4 ARG A 151 LEU A 159 0 SHEET 2 AA5 4 GLU A 165 VAL A 173 -1 O THR A 171 N TRP A 153 SHEET 3 AA5 4 ALA A 177 THR A 188 -1 O VAL A 182 N LEU A 168 SHEET 4 AA5 4 VAL A 201 PHE A 205 -1 O LYS A 202 N LYS A 181 SHEET 1 AA6 4 GLU A 309 GLN A 316 0 SHEET 2 AA6 4 LYS A 319 SER A 326 -1 O PHE A 323 N HIS A 312 SHEET 3 AA6 4 GLY A 340 SER A 346 -1 O TYR A 342 N THR A 324 SHEET 4 AA6 4 VAL A 354 PRO A 355 -1 O VAL A 354 N VAL A 345 SHEET 1 AA7 4 GLU A 309 GLN A 316 0 SHEET 2 AA7 4 LYS A 319 SER A 326 -1 O PHE A 323 N HIS A 312 SHEET 3 AA7 4 GLY A 340 SER A 346 -1 O TYR A 342 N THR A 324 SHEET 4 AA7 4 LEU A 361 GLY A 364 -1 O VAL A 362 N VAL A 341 SHEET 1 AA8 3 THR A 373 VAL A 378 0 SHEET 2 AA8 3 LEU A 383 PRO A 392 -1 O THR A 385 N TYR A 377 SHEET 3 AA8 3 TYR A 398 GLU A 404 -1 O THR A 403 N ILE A 388 SHEET 1 AA9 4 THR A 373 VAL A 378 0 SHEET 2 AA9 4 LEU A 383 PRO A 392 -1 O THR A 385 N TYR A 377 SHEET 3 AA9 4 PRO A 406 LYS A 413 -1 O VAL A 408 N VAL A 384 SHEET 4 AA9 4 GLN A 416 TYR A 425 -1 O PHE A 423 N THR A 407 CISPEP 1 THR A 174 PRO A 175 0 -5.64 CISPEP 2 GLY A 351 PRO A 352 0 5.65 CRYST1 98.314 98.314 216.475 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010171 0.005873 0.000000 0.00000 SCALE2 0.000000 0.011745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004619 0.00000