HEADER HYDROLASE 30-MAR-21 7EI0 TITLE CRYSTAL STRUCTURE OF FALCIPAIN 2 FROM 3D7 STRAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEINASE FALCIPAIN 2A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.22.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1115700; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MALARIA, PLASMODIUM, PROTEASE, FALCIPAIN 2, DRUG TARGET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHAKRABORTY,S.BISWAS REVDAT 3 29-NOV-23 7EI0 1 REMARK REVDAT 2 19-OCT-22 7EI0 1 JRNL REVDAT 1 06-APR-22 7EI0 0 JRNL AUTH S.CHAKRABORTY,B.ALAM,S.BISWAS JRNL TITL NEW INSIGHTS OF FALCIPAIN 2 STRUCTURE FROM PLASMODIUM JRNL TITL 2 FALCIPARUM 3D7 STRAIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 590 145 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 34974303 JRNL DOI 10.1016/J.BBRC.2021.12.080 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6880 - 6.7894 1.00 2948 148 0.1891 0.1951 REMARK 3 2 6.7894 - 5.3936 1.00 2790 164 0.2654 0.3033 REMARK 3 3 5.3936 - 4.7132 1.00 2737 145 0.2683 0.3176 REMARK 3 4 4.7132 - 4.2829 0.99 2725 132 0.2736 0.2888 REMARK 3 5 4.2829 - 3.9762 0.99 2703 125 0.3162 0.3632 REMARK 3 6 3.9762 - 3.7420 1.00 2731 128 0.3429 0.3866 REMARK 3 7 3.7420 - 3.5547 1.00 2676 153 0.3456 0.3743 REMARK 3 8 3.5547 - 3.4001 1.00 2661 156 0.3807 0.3727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 136.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.517 -1.358 -40.735 REMARK 3 T TENSOR REMARK 3 T11: 1.7720 T22: 1.2004 REMARK 3 T33: 1.9861 T12: -0.2697 REMARK 3 T13: 0.1714 T23: 0.4093 REMARK 3 L TENSOR REMARK 3 L11: 6.9834 L22: 5.2488 REMARK 3 L33: 6.4487 L12: -5.1875 REMARK 3 L13: -1.7565 L23: -0.6103 REMARK 3 S TENSOR REMARK 3 S11: -0.5680 S12: -0.1967 S13: -1.6969 REMARK 3 S21: -0.3968 S22: -0.4918 S23: -1.2915 REMARK 3 S31: 2.9971 S32: -1.3455 S33: 1.1474 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 24:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.799 17.759 -28.972 REMARK 3 T TENSOR REMARK 3 T11: 0.7993 T22: 1.3834 REMARK 3 T33: 0.9501 T12: 0.1729 REMARK 3 T13: 0.0486 T23: 0.5328 REMARK 3 L TENSOR REMARK 3 L11: 7.9236 L22: 3.8189 REMARK 3 L33: 10.1810 L12: 2.1475 REMARK 3 L13: 4.0524 L23: 1.8948 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: -1.1122 S13: -0.1152 REMARK 3 S21: 0.4633 S22: -0.3797 S23: -0.3897 REMARK 3 S31: 0.3069 S32: 0.3129 S33: 0.3505 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 125:157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.511 7.364 -42.224 REMARK 3 T TENSOR REMARK 3 T11: 1.0377 T22: 0.9137 REMARK 3 T33: 0.9900 T12: 0.1136 REMARK 3 T13: 0.0402 T23: 0.4126 REMARK 3 L TENSOR REMARK 3 L11: 5.1099 L22: 7.8646 REMARK 3 L33: 8.6979 L12: 1.8711 REMARK 3 L13: -0.5533 L23: 2.2017 REMARK 3 S TENSOR REMARK 3 S11: -0.3235 S12: 0.3867 S13: -0.6416 REMARK 3 S21: -1.2770 S22: -0.0110 S23: -0.8357 REMARK 3 S31: 2.0273 S32: 0.8293 S33: 0.3671 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 158:173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.788 18.885 -53.615 REMARK 3 T TENSOR REMARK 3 T11: 1.1449 T22: 1.5471 REMARK 3 T33: 1.3240 T12: -0.0026 REMARK 3 T13: 0.2689 T23: 0.2662 REMARK 3 L TENSOR REMARK 3 L11: 5.7086 L22: 5.5782 REMARK 3 L33: 8.5740 L12: 5.8969 REMARK 3 L13: -3.4932 L23: -1.8033 REMARK 3 S TENSOR REMARK 3 S11: -0.5511 S12: 1.9011 S13: 0.1062 REMARK 3 S21: -2.2170 S22: -0.2296 S23: -1.6667 REMARK 3 S31: 0.4717 S32: 0.8199 S33: 0.5405 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 174:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.228 13.417 -56.706 REMARK 3 T TENSOR REMARK 3 T11: 0.9034 T22: 1.1478 REMARK 3 T33: 0.9319 T12: -0.0457 REMARK 3 T13: 0.1253 T23: 0.1944 REMARK 3 L TENSOR REMARK 3 L11: 6.7768 L22: 5.9425 REMARK 3 L33: 4.4507 L12: 1.7356 REMARK 3 L13: 2.1189 L23: 4.8862 REMARK 3 S TENSOR REMARK 3 S11: -0.5671 S12: 0.4066 S13: -1.0643 REMARK 3 S21: -0.2378 S22: -0.3162 S23: 0.5191 REMARK 3 S31: 1.2959 S32: 0.9827 S33: 0.9880 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 204:241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.235 13.415 -45.948 REMARK 3 T TENSOR REMARK 3 T11: 0.6999 T22: 0.9453 REMARK 3 T33: 0.5688 T12: 0.1317 REMARK 3 T13: 0.0983 T23: 0.2667 REMARK 3 L TENSOR REMARK 3 L11: 11.7310 L22: 9.5571 REMARK 3 L33: 5.2320 L12: 3.0184 REMARK 3 L13: 1.0211 L23: -2.6853 REMARK 3 S TENSOR REMARK 3 S11: -0.1474 S12: -0.3498 S13: -0.7807 REMARK 3 S21: -0.6345 S22: -0.0072 S23: 0.1024 REMARK 3 S31: 0.5296 S32: 0.8507 S33: 0.3731 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.066 18.985 1.182 REMARK 3 T TENSOR REMARK 3 T11: 2.4017 T22: 2.3159 REMARK 3 T33: 1.3517 T12: -0.8951 REMARK 3 T13: -0.0841 T23: 0.3313 REMARK 3 L TENSOR REMARK 3 L11: 3.4664 L22: 4.9921 REMARK 3 L33: 4.0310 L12: -1.2237 REMARK 3 L13: -2.7868 L23: -1.7754 REMARK 3 S TENSOR REMARK 3 S11: 2.5825 S12: -2.2494 S13: -0.3419 REMARK 3 S21: 4.4442 S22: -0.9961 S23: 0.5181 REMARK 3 S31: 1.5336 S32: -3.2646 S33: -1.3929 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 24:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.033 29.642 -18.136 REMARK 3 T TENSOR REMARK 3 T11: 0.6875 T22: 1.3739 REMARK 3 T33: 0.8800 T12: 0.1271 REMARK 3 T13: -0.0050 T23: 0.3315 REMARK 3 L TENSOR REMARK 3 L11: 11.3097 L22: 19.8376 REMARK 3 L33: 5.8819 L12: 15.5129 REMARK 3 L13: -0.1505 L23: -2.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.1880 S12: 0.5280 S13: -0.9352 REMARK 3 S21: -0.8220 S22: 0.4140 S23: -1.1320 REMARK 3 S31: -0.1689 S32: -0.2516 S33: -0.2930 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 125:150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.870 19.035 -4.376 REMARK 3 T TENSOR REMARK 3 T11: 2.0575 T22: 2.4029 REMARK 3 T33: 1.5498 T12: -0.8617 REMARK 3 T13: -0.9143 T23: 0.7845 REMARK 3 L TENSOR REMARK 3 L11: 2.8612 L22: 11.3059 REMARK 3 L33: 5.5814 L12: 8.4181 REMARK 3 L13: 0.9918 L23: -4.4935 REMARK 3 S TENSOR REMARK 3 S11: 4.5670 S12: -4.3668 S13: -3.3803 REMARK 3 S21: 6.0530 S22: -4.2098 S23: -2.9673 REMARK 3 S31: -0.3791 S32: 1.3591 S33: -0.0219 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 151:173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.716 4.999 -20.640 REMARK 3 T TENSOR REMARK 3 T11: 1.8462 T22: 1.9347 REMARK 3 T33: 2.1698 T12: -0.0716 REMARK 3 T13: 0.1556 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 7.7069 L22: 9.9218 REMARK 3 L33: 5.4047 L12: 0.5794 REMARK 3 L13: -5.0244 L23: -4.5689 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.8368 S13: -4.0571 REMARK 3 S21: -1.4378 S22: 0.1970 S23: -3.0405 REMARK 3 S31: 4.4409 S32: 1.3443 S33: -0.1629 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 174:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.363 2.309 -13.387 REMARK 3 T TENSOR REMARK 3 T11: 1.7578 T22: 1.6581 REMARK 3 T33: 3.2951 T12: -0.4681 REMARK 3 T13: -0.1181 T23: 0.2920 REMARK 3 L TENSOR REMARK 3 L11: 1.0803 L22: 2.3075 REMARK 3 L33: -0.2341 L12: 3.5592 REMARK 3 L13: -1.2610 L23: -0.8789 REMARK 3 S TENSOR REMARK 3 S11: -0.5760 S12: -0.2361 S13: -5.8399 REMARK 3 S21: 0.6523 S22: -0.2716 S23: -8.0506 REMARK 3 S31: 1.5843 S32: -0.2439 S33: 0.8443 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN B AND RESID 204:241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.445 12.993 -13.849 REMARK 3 T TENSOR REMARK 3 T11: 1.4873 T22: 1.5840 REMARK 3 T33: 2.3715 T12: -0.0615 REMARK 3 T13: -0.1941 T23: 0.4761 REMARK 3 L TENSOR REMARK 3 L11: 9.8639 L22: 9.8696 REMARK 3 L33: 3.6077 L12: 9.7567 REMARK 3 L13: -4.2491 L23: 1.7639 REMARK 3 S TENSOR REMARK 3 S11: 0.3760 S12: -0.7712 S13: -3.3460 REMARK 3 S21: 0.0345 S22: -0.4772 S23: -4.2461 REMARK 3 S31: 0.1262 S32: -0.6342 S33: 0.1022 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN A AND RESID 301:301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.485 30.102 -41.658 REMARK 3 T TENSOR REMARK 3 T11: 2.5447 T22: 1.9977 REMARK 3 T33: -3.5246 T12: -0.7632 REMARK 3 T13: -3.1736 T23: 0.0715 REMARK 3 L TENSOR REMARK 3 L11: 1.9982 L22: 3.9759 REMARK 3 L33: 1.6359 L12: 1.9943 REMARK 3 L13: 1.9995 L23: -2.5480 REMARK 3 S TENSOR REMARK 3 S11: -0.8593 S12: 0.9015 S13: 1.6682 REMARK 3 S21: -0.1857 S22: -0.8751 S23: 0.1721 REMARK 3 S31: -1.6108 S32: 0.6973 S33: 0.2768 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: ( CHAIN A AND RESID 302:302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.237 13.628 -39.078 REMARK 3 T TENSOR REMARK 3 T11: -0.7226 T22: 4.0670 REMARK 3 T33: 0.9828 T12: 1.2608 REMARK 3 T13: -2.3307 T23: -0.6662 REMARK 3 L TENSOR REMARK 3 L11: 1.9988 L22: 1.9902 REMARK 3 L33: 3.1314 L12: 2.0061 REMARK 3 L13: 2.0001 L23: 9.7462 REMARK 3 S TENSOR REMARK 3 S11: 3.2506 S12: -0.8190 S13: -2.9502 REMARK 3 S21: 1.7583 S22: -2.5634 S23: -2.8470 REMARK 3 S31: 0.6029 S32: 0.3606 S33: -0.7552 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: ( CHAIN A AND RESID 304:304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.992 19.937 -54.803 REMARK 3 T TENSOR REMARK 3 T11: 2.4050 T22: -3.9947 REMARK 3 T33: 4.2588 T12: 0.4792 REMARK 3 T13: -1.7372 T23: -1.0594 REMARK 3 L TENSOR REMARK 3 L11: 1.3988 L22: 1.2611 REMARK 3 L33: 2.3762 L12: 0.3678 REMARK 3 L13: -0.7470 L23: 1.3230 REMARK 3 S TENSOR REMARK 3 S11: 0.2978 S12: -0.3212 S13: 1.9119 REMARK 3 S21: -2.4698 S22: 0.5929 S23: -3.6403 REMARK 3 S31: -0.6805 S32: 0.3122 S33: -0.4188 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: ( CHAIN A AND RESID 306:306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.875 -6.668 -43.575 REMARK 3 T TENSOR REMARK 3 T11: 6.9616 T22: -2.5743 REMARK 3 T33: 3.6258 T12: -1.1040 REMARK 3 T13: -3.0607 T23: -0.4529 REMARK 3 L TENSOR REMARK 3 L11: 1.9997 L22: 2.0000 REMARK 3 L33: 1.9988 L12: 2.0000 REMARK 3 L13: 2.0004 L23: 2.0002 REMARK 3 S TENSOR REMARK 3 S11: -16.7374 S12: 38.7650 S13: 20.2957 REMARK 3 S21: -13.6716 S22: 7.0590 S23: -6.2226 REMARK 3 S31: -18.3237 S32: 13.1938 S33: 9.6873 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 41 OR RESID REMARK 3 43 THROUGH 241)) REMARK 3 SELECTION : (CHAIN B AND (RESID 1 THROUGH 41 OR RESID REMARK 3 43 THROUGH 241)) REMARK 3 ATOM PAIRS NUMBER : 1422 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23265 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.22000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.91400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BPF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 83.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHYLENE GLYCOL, AMMONIUM SULFATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.44550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.77500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.22275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.77500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 180.66825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.22275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 180.66825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.44550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -57.77500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 57.77500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -60.22275 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 36 O SER B 205 1.74 REMARK 500 O GLY B 207 O HOH B 401 1.91 REMARK 500 NZ LYS B 12 O ASN B 14 2.02 REMARK 500 OG1 THR B 220 O HOH B 402 2.02 REMARK 500 O ASP B 133 NH1 ARG B 227 2.08 REMARK 500 NE2 GLN B 36 OG SER B 205 2.09 REMARK 500 OH TYR B 4 NZ LYS B 135 2.13 REMARK 500 OG SER B 74 OD2 ASP B 91 2.14 REMARK 500 ND2 ASN B 188 OE1 GLU B 195 2.16 REMARK 500 O SER A 74 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 178 CB - CG - CD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 2 -115.87 87.31 REMARK 500 ASN A 3 115.67 -175.86 REMARK 500 TYR A 4 -71.68 -49.45 REMARK 500 TYR A 11 -53.07 -120.28 REMARK 500 ASN A 14 83.37 -62.63 REMARK 500 GLU A 15 30.11 -143.65 REMARK 500 ASN A 16 56.57 32.96 REMARK 500 PHE A 17 154.17 -27.56 REMARK 500 LEU A 26 45.69 -94.77 REMARK 500 HIS A 27 19.56 -154.67 REMARK 500 LYS A 37 -155.35 53.58 REMARK 500 ASN A 38 25.59 -76.36 REMARK 500 ILE A 57 -84.52 -88.52 REMARK 500 ARG A 58 -79.37 -42.87 REMARK 500 ASN A 60 58.65 23.99 REMARK 500 SER A 108 -127.34 42.13 REMARK 500 PRO A 111 148.03 -39.23 REMARK 500 ASN A 112 118.44 -172.64 REMARK 500 ARG A 118 3.02 -59.48 REMARK 500 ASP A 133 -12.95 -49.90 REMARK 500 TYR A 159 120.66 -37.53 REMARK 500 GLU A 161 175.13 176.91 REMARK 500 ASP A 165 25.97 -154.31 REMARK 500 PRO A 189 -4.66 -55.08 REMARK 500 GLN A 209 11.72 -58.70 REMARK 500 ARG A 213 29.66 49.50 REMARK 500 CYS A 229 28.59 47.87 REMARK 500 LEU A 231 134.61 -20.30 REMARK 500 TYR B 4 -73.44 -10.80 REMARK 500 LYS B 12 -98.29 -58.00 REMARK 500 ASN B 14 -118.19 60.49 REMARK 500 GLU B 15 124.87 72.49 REMARK 500 LEU B 26 48.59 -95.59 REMARK 500 HIS B 27 19.88 -152.98 REMARK 500 LYS B 37 -155.83 54.76 REMARK 500 ASN B 38 25.62 -76.51 REMARK 500 ILE B 57 -86.08 -89.35 REMARK 500 ARG B 58 -76.17 -41.03 REMARK 500 LYS B 59 21.81 -72.91 REMARK 500 ASN B 60 57.27 23.54 REMARK 500 PHE B 75 -17.65 61.16 REMARK 500 SER B 108 -126.34 40.88 REMARK 500 PRO B 111 147.98 -38.75 REMARK 500 ASN B 112 118.57 -173.45 REMARK 500 ARG B 118 3.97 -56.20 REMARK 500 ASN B 127 -172.84 -170.73 REMARK 500 LEU B 136 -70.17 -65.05 REMARK 500 PHE B 156 -178.29 -61.09 REMARK 500 ALA B 157 -34.81 97.89 REMARK 500 TYR B 159 119.76 -38.60 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 7EI0 A 1 241 UNP Q8I6U4 Q8I6U4_PLAF7 244 484 DBREF 7EI0 B 1 241 UNP Q8I6U4 Q8I6U4_PLAF7 244 484 SEQRES 1 A 241 GLN MET ASN TYR GLU GLU VAL ILE LYS LYS TYR LYS GLY SEQRES 2 A 241 ASN GLU ASN PHE ASP HIS ALA ALA TYR ASP TRP ARG LEU SEQRES 3 A 241 HIS SER GLY VAL THR PRO VAL LYS ASP GLN LYS ASN CYS SEQRES 4 A 241 GLY SER YCM TRP ALA PHE SER SER ILE GLY SER VAL GLU SEQRES 5 A 241 SER GLN TYR ALA ILE ARG LYS ASN LYS LEU ILE THR LEU SEQRES 6 A 241 SER GLU GLN GLU LEU VAL ASP CYS SER PHE LYS ASN TYR SEQRES 7 A 241 GLY CYS ASN GLY GLY LEU ILE ASN ASN ALA PHE GLU ASP SEQRES 8 A 241 MET ILE GLU LEU GLY GLY ILE CYS THR ASP ASP ASP TYR SEQRES 9 A 241 PRO TYR VAL SER ASP ALA PRO ASN LEU CYS ASN ILE ASP SEQRES 10 A 241 ARG CYS THR GLU LYS TYR GLY ILE LYS ASN TYR LEU SER SEQRES 11 A 241 VAL PRO ASP ASN LYS LEU LYS GLU ALA LEU ARG PHE LEU SEQRES 12 A 241 GLY PRO ILE SER ILE SER VAL ALA VAL SER ASP ASP PHE SEQRES 13 A 241 ALA PHE TYR LYS GLU GLY ILE PHE ASP GLY GLU CYS GLY SEQRES 14 A 241 ASP GLN LEU ASN HIS ALA VAL MET LEU VAL GLY PHE GLY SEQRES 15 A 241 MET LYS GLU ILE VAL ASN PRO LEU THR LYS LYS GLY GLU SEQRES 16 A 241 LYS HIS TYR TYR TYR ILE ILE LYS ASN SER TRP GLY GLN SEQRES 17 A 241 GLN TRP GLY GLU ARG GLY PHE ILE ASN ILE GLU THR ASP SEQRES 18 A 241 GLU SER GLY LEU MET ARG LYS CYS GLY LEU GLY THR ASP SEQRES 19 A 241 ALA PHE ILE PRO LEU ILE GLU SEQRES 1 B 241 GLN MET ASN TYR GLU GLU VAL ILE LYS LYS TYR LYS GLY SEQRES 2 B 241 ASN GLU ASN PHE ASP HIS ALA ALA TYR ASP TRP ARG LEU SEQRES 3 B 241 HIS SER GLY VAL THR PRO VAL LYS ASP GLN LYS ASN CYS SEQRES 4 B 241 GLY SER YCM TRP ALA PHE SER SER ILE GLY SER VAL GLU SEQRES 5 B 241 SER GLN TYR ALA ILE ARG LYS ASN LYS LEU ILE THR LEU SEQRES 6 B 241 SER GLU GLN GLU LEU VAL ASP CYS SER PHE LYS ASN TYR SEQRES 7 B 241 GLY CYS ASN GLY GLY LEU ILE ASN ASN ALA PHE GLU ASP SEQRES 8 B 241 MET ILE GLU LEU GLY GLY ILE CYS THR ASP ASP ASP TYR SEQRES 9 B 241 PRO TYR VAL SER ASP ALA PRO ASN LEU CYS ASN ILE ASP SEQRES 10 B 241 ARG CYS THR GLU LYS TYR GLY ILE LYS ASN TYR LEU SER SEQRES 11 B 241 VAL PRO ASP ASN LYS LEU LYS GLU ALA LEU ARG PHE LEU SEQRES 12 B 241 GLY PRO ILE SER ILE SER VAL ALA VAL SER ASP ASP PHE SEQRES 13 B 241 ALA PHE TYR LYS GLU GLY ILE PHE ASP GLY GLU CYS GLY SEQRES 14 B 241 ASP GLN LEU ASN HIS ALA VAL MET LEU VAL GLY PHE GLY SEQRES 15 B 241 MET LYS GLU ILE VAL ASN PRO LEU THR LYS LYS GLY GLU SEQRES 16 B 241 LYS HIS TYR TYR TYR ILE ILE LYS ASN SER TRP GLY GLN SEQRES 17 B 241 GLN TRP GLY GLU ARG GLY PHE ILE ASN ILE GLU THR ASP SEQRES 18 B 241 GLU SER GLY LEU MET ARG LYS CYS GLY LEU GLY THR ASP SEQRES 19 B 241 ALA PHE ILE PRO LEU ILE GLU MODRES 7EI0 YCM A 42 CYS MODIFIED RESIDUE MODRES 7EI0 YCM B 42 CYS MODIFIED RESIDUE HET YCM A 42 17 HET YCM B 42 17 HET PGE A 301 24 HET PGE A 302 24 HET PGE A 303 24 HET SO4 A 304 10 HET SO4 A 305 5 HET EDO A 306 10 HET EDO A 307 10 HET NA A 308 1 HET CL A 309 1 HET PGE B 301 24 HET EDO B 302 10 HET NA B 303 1 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM PGE TRIETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 YCM 2(C5 H10 N2 O3 S) FORMUL 3 PGE 4(C6 H14 O4) FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 EDO 3(C2 H6 O2) FORMUL 10 NA 2(NA 1+) FORMUL 11 CL CL 1- FORMUL 15 HOH *53(H2 O) HELIX 1 AA1 ASN A 3 LYS A 12 1 10 HELIX 2 AA2 ARG A 25 SER A 28 5 4 HELIX 3 AA3 SER A 41 ARG A 58 1 18 HELIX 4 AA4 GLU A 67 SER A 74 1 8 HELIX 5 AA5 TYR A 78 GLY A 82 5 5 HELIX 6 AA6 LEU A 84 GLY A 96 1 13 HELIX 7 AA7 LYS A 135 LEU A 143 1 9 HELIX 8 AA8 SER A 153 TYR A 159 5 7 HELIX 9 AA9 ARG A 227 LEU A 231 5 5 HELIX 10 AB1 TYR B 4 LYS B 12 1 9 HELIX 11 AB2 ARG B 25 SER B 28 5 4 HELIX 12 AB3 SER B 41 ARG B 58 1 18 HELIX 13 AB4 SER B 66 SER B 74 1 9 HELIX 14 AB5 TYR B 78 GLY B 82 5 5 HELIX 15 AB6 LEU B 84 LEU B 95 1 12 HELIX 16 AB7 LYS B 135 GLY B 144 1 10 HELIX 17 AB8 ARG B 227 LEU B 231 5 5 SHEET 1 AA1 5 TYR A 22 ASP A 23 0 SHEET 2 AA1 5 ALA A 175 VAL A 187 -1 O PHE A 181 N TYR A 22 SHEET 3 AA1 5 ILE A 146 SER A 149 -1 N ILE A 146 O LEU A 178 SHEET 4 AA1 5 ALA A 235 LEU A 239 -1 O PHE A 236 N SER A 147 SHEET 5 AA1 5 ASN A 127 SER A 130 -1 N ASN A 127 O LEU A 239 SHEET 1 AA2 5 TYR A 22 ASP A 23 0 SHEET 2 AA2 5 ALA A 175 VAL A 187 -1 O PHE A 181 N TYR A 22 SHEET 3 AA2 5 GLY A 194 LYS A 203 -1 O ILE A 201 N GLY A 180 SHEET 4 AA2 5 PHE A 215 THR A 220 -1 O ILE A 216 N ILE A 202 SHEET 5 AA2 5 ILE A 163 PHE A 164 1 N PHE A 164 O GLU A 219 SHEET 1 AA3 2 ILE A 98 CYS A 99 0 SHEET 2 AA3 2 LYS A 122 TYR A 123 -1 O TYR A 123 N ILE A 98 SHEET 1 AA4 5 TYR B 22 ASP B 23 0 SHEET 2 AA4 5 ALA B 175 LYS B 184 -1 O PHE B 181 N TYR B 22 SHEET 3 AA4 5 ILE B 146 SER B 149 -1 N ILE B 146 O LEU B 178 SHEET 4 AA4 5 ALA B 235 LEU B 239 -1 O PHE B 236 N SER B 147 SHEET 5 AA4 5 ASN B 127 SER B 130 -1 N ASN B 127 O LEU B 239 SHEET 1 AA5 4 TYR B 22 ASP B 23 0 SHEET 2 AA5 4 ALA B 175 LYS B 184 -1 O PHE B 181 N TYR B 22 SHEET 3 AA5 4 HIS B 197 LYS B 203 -1 O LYS B 203 N MET B 177 SHEET 4 AA5 4 PHE B 215 THR B 220 -1 O ILE B 218 N TYR B 200 SSBOND 1 CYS A 39 CYS A 80 1555 1555 2.04 SSBOND 2 CYS A 73 CYS A 114 1555 1555 2.03 SSBOND 3 CYS A 99 CYS A 119 1555 1555 2.04 SSBOND 4 CYS A 168 CYS A 229 1555 1555 2.05 SSBOND 5 CYS B 39 CYS B 80 1555 1555 2.04 SSBOND 6 CYS B 73 CYS B 114 1555 1555 2.02 SSBOND 7 CYS B 99 CYS B 119 1555 1555 2.04 LINK C SER A 41 N YCM A 42 1555 1555 1.33 LINK C YCM A 42 N TRP A 43 1555 1555 1.33 LINK C SER B 41 N YCM B 42 1555 1555 1.32 LINK C YCM B 42 N TRP B 43 1555 1555 1.32 LINK O VAL A 33 NA NA A 308 1555 1555 3.09 LINK OD1 ASP B 91 NA NA B 303 1555 1555 3.13 CRYST1 115.550 115.550 240.891 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008654 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004151 0.00000