HEADER HYDROLASE 01-APR-21 7EJ3 TITLE UTP CYCLOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP CYCLOHYDROLASE II; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS WRATISLAVIENSIS; SOURCE 3 ORGANISM_TAXID: 44752; SOURCE 4 GENE: C8E05_0284; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UTP, URCA, LYASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,Y.ZHANG,Z.YUCHI REVDAT 2 29-MAY-24 7EJ3 1 REMARK REVDAT 1 21-SEP-22 7EJ3 0 JRNL AUTH H.ZHANG,Y.WEI,L.LIN,J.LIU,R.CHU,P.CAO,E.L.ANG,H.ZHAO, JRNL AUTH 2 Z.YUCHI,Y.ZHANG JRNL TITL STRUCTURAL AND BIOCHEMICAL INVESTIGATION OF UTP JRNL TITL 2 CYCLOHYDROLASE JRNL REF ACS CATALYSIS 8895 2021 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.1C02252 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 140436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9300 - 3.8500 1.00 10979 150 0.1444 0.1507 REMARK 3 2 3.8500 - 3.0600 1.00 10522 146 0.1372 0.1710 REMARK 3 3 3.0600 - 2.6700 1.00 10362 145 0.1472 0.1786 REMARK 3 4 2.6700 - 2.4300 0.99 10273 143 0.1386 0.1595 REMARK 3 5 2.4300 - 2.2500 0.99 10175 140 0.1309 0.1906 REMARK 3 6 2.2500 - 2.1200 0.99 10114 139 0.1250 0.1528 REMARK 3 7 2.1200 - 2.0200 0.98 10036 140 0.1272 0.1955 REMARK 3 8 2.0200 - 1.9300 0.97 9909 139 0.1283 0.1696 REMARK 3 9 1.9300 - 1.8500 0.96 9748 132 0.1360 0.1943 REMARK 3 10 1.8500 - 1.7900 0.95 9662 135 0.1302 0.1534 REMARK 3 11 1.7900 - 1.7300 0.93 9429 132 0.1351 0.1847 REMARK 3 12 1.7300 - 1.6800 0.92 9312 133 0.1419 0.1996 REMARK 3 13 1.6800 - 1.6400 0.91 9174 128 0.1563 0.2363 REMARK 3 14 1.6400 - 1.6000 0.87 8818 121 0.1849 0.2589 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN B AND (RESID 27 THROUGH 52 OR REMARK 3 (RESID 53 THROUGH 54 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 55 THROUGH 236 OR (RESID 237 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 238 THROUGH 423 OR REMARK 3 RESID 501 THROUGH 701)) REMARK 3 ATOM PAIRS NUMBER : 2432 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9715 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146135 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.20 REMARK 200 R MERGE FOR SHELL (I) : 1.08900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG 8000, 0.5 M LITHIUM REMARK 280 SULFATE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.49633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 188.99267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.74450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 236.24083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.24817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.49633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 188.99267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 236.24083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.74450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.24817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1453 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 857 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 HIS A 18 REMARK 465 ILE A 19 REMARK 465 ARG A 20 REMARK 465 LEU A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 ASP A 424 REMARK 465 GLY A 425 REMARK 465 MET B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 SER B 7 REMARK 465 VAL B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 GLU B 13 REMARK 465 SER B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 17 REMARK 465 HIS B 18 REMARK 465 ILE B 19 REMARK 465 ARG B 20 REMARK 465 LEU B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 GLY B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 905 O HOH A 907 1.84 REMARK 500 OE2 GLU B 188 O HOH B 601 1.84 REMARK 500 O HOH B 1039 O HOH B 1092 1.85 REMARK 500 O HOH B 1072 O HOH B 1097 1.86 REMARK 500 O HOH B 966 O HOH B 972 1.87 REMARK 500 O HOH B 1039 O HOH B 1072 1.88 REMARK 500 O HOH A 1039 O HOH A 1298 1.88 REMARK 500 O HOH A 1034 O HOH A 1239 1.90 REMARK 500 O PRO B 406 O HOH B 602 1.91 REMARK 500 O HOH B 984 O HOH B 1102 1.92 REMARK 500 O HOH B 995 O HOH B 1115 1.93 REMARK 500 O HOH A 1038 O HOH A 1360 1.95 REMARK 500 N TYR B 209 O HOH B 603 1.97 REMARK 500 O HOH A 907 O HOH B 1063 1.98 REMARK 500 O HOH B 863 O HOH B 1071 2.00 REMARK 500 O HOH B 1089 O HOH B 1120 2.00 REMARK 500 NH1 ARG A 298 O HOH A 901 2.00 REMARK 500 O HOH A 1168 O HOH A 1370 2.01 REMARK 500 O HOH A 1014 O HOH B 635 2.02 REMARK 500 O HOH A 1137 O HOH A 1341 2.03 REMARK 500 O HOH B 748 O HOH B 877 2.04 REMARK 500 O HOH A 1133 O HOH A 1294 2.04 REMARK 500 O HOH B 1000 O HOH B 1158 2.07 REMARK 500 O HOH B 1008 O HOH B 1058 2.07 REMARK 500 O HOH B 729 O HOH B 1002 2.09 REMARK 500 O HOH A 1217 O HOH A 1302 2.11 REMARK 500 O HOH A 1170 O HOH A 1356 2.15 REMARK 500 O HOH A 1014 O HOH A 1390 2.16 REMARK 500 NH2 ARG B 70 O HOH B 604 2.16 REMARK 500 O HOH B 800 O HOH B 994 2.17 REMARK 500 O HOH B 1000 O HOH B 1145 2.18 REMARK 500 O HOH B 1054 O HOH B 1165 2.19 REMARK 500 O HOH A 1254 O HOH A 1356 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1448 O HOH A 1450 12566 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 63 18.25 81.59 REMARK 500 TYR A 209 80.86 49.80 REMARK 500 PHE A 339 71.89 46.12 REMARK 500 SER B 63 19.54 82.30 REMARK 500 TYR B 209 83.32 48.44 REMARK 500 PHE B 339 72.47 45.60 REMARK 500 GLN B 340 -7.46 -59.73 REMARK 500 VAL B 377 -73.18 -95.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1453 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A1454 DISTANCE = 6.93 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY B 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 CYS A 265 SG 112.8 REMARK 620 3 CYS A 267 SG 114.1 113.6 REMARK 620 4 HOH A1334 O 108.0 108.8 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 254 SG REMARK 620 2 CYS B 265 SG 114.5 REMARK 620 3 CYS B 267 SG 114.3 113.1 REMARK 620 N 1 2 DBREF1 7EJ3 A 3 425 UNP A0A3D9R4E8_9NOCA DBREF2 7EJ3 A A0A3D9R4E8 1 423 DBREF1 7EJ3 B 3 425 UNP A0A3D9R4E8_9NOCA DBREF2 7EJ3 B A0A3D9R4E8 1 423 SEQADV 7EJ3 ASP A 89 UNP A0A3D9R4E ASN 87 CONFLICT SEQADV 7EJ3 GLN A 104 UNP A0A3D9R4E GLU 102 CONFLICT SEQADV 7EJ3 ASP B 89 UNP A0A3D9R4E ASN 87 CONFLICT SEQADV 7EJ3 GLN B 104 UNP A0A3D9R4E GLU 102 CONFLICT SEQRES 1 A 423 MET SER ALA GLU SER VAL ALA ALA THR PRO GLU SER ALA SEQRES 2 A 423 GLY GLY HIS ILE ARG LEU THR SER HIS SER GLY GLY VAL SEQRES 3 A 423 GLY ALA LEU PRO ILE HIS TRP GLY ALA PRO THR ALA SER SEQRES 4 A 423 GLU ARG GLY PRO VAL VAL GLY THR THR THR ASN ARG ALA SEQRES 5 A 423 HIS ARG ASN VAL ILE GLY THR HIS SER GLY SER TYR SER SEQRES 6 A 423 ILE TYR ARG ALA LEU ALA VAL ALA SER GLY ALA LEU SER SEQRES 7 A 423 ARG HIS HIS LYS ALA ASP LEU THR ASP THR ALA PRO THR SEQRES 8 A 423 ASN ILE ILE GLY PRO TYR PRO GLN TRP SER GLN PRO GLY SEQRES 9 A 423 LYS ILE VAL SER LEU ASP PRO TRP GLY ALA THR VAL ALA SEQRES 10 A 423 GLU VAL PHE ALA ALA GLU LEU ALA ALA GLY HIS ASP ILE SEQRES 11 A 423 ARG PRO SER ILE ALA VAL THR LYS ALA HIS VAL ILE LEU SEQRES 12 A 423 PRO GLU VAL MET GLU ALA ILE GLN LYS GLY ARG LEU HIS SEQRES 13 A 423 PRO ASP GLY ARG PHE LEU LEU PRO SER GLY ALA ALA LEU SEQRES 14 A 423 VAL THR LYS ALA ALA ILE GLU PRO VAL TRP HIS LEU PRO SEQRES 15 A 423 GLY VAL ALA GLU ARG PHE HIS CYS SER GLU THR ASP LEU SEQRES 16 A 423 ARG ARG VAL LEU PHE GLU GLU THR GLY GLY MET TYR PRO SEQRES 17 A 423 GLU LEU VAL THR ARG SER ASP LEU GLU VAL PHE LEU PRO SEQRES 18 A 423 PRO ILE GLY GLY GLN THR VAL TYR ILE PHE GLY ASP ALA SEQRES 19 A 423 ARG ASP LEU ALA ASP PRO GLY VAL GLU LEU THR ALA ARG SEQRES 20 A 423 VAL HIS ASP GLU CYS ASN GLY SER ASP VAL PHE GLY SER SEQRES 21 A 423 ASP ILE CYS THR CYS ARG PRO TYR LEU THR HIS ALA ILE SEQRES 22 A 423 GLU GLU CYS ILE GLN GLY ALA GLN ARG GLY GLY VAL GLY SEQRES 23 A 423 LEU VAL ALA TYR SER ARG LYS GLU GLY ARG ALA LEU GLY SEQRES 24 A 423 GLU VAL THR LYS PHE LEU VAL TYR ASN ALA ARG LYS ARG SEQRES 25 A 423 GLN VAL GLY GLY ASP THR ALA ASP GLN TYR PHE ALA ARG SEQRES 26 A 423 THR GLU CYS VAL ALA GLY VAL GLN ASP MET ARG PHE GLN SEQRES 27 A 423 GLU MET MET PRO ASP VAL LEU HIS TRP LEU GLY VAL ARG SEQRES 28 A 423 LYS ILE HIS ARG LEU VAL SER MET SER ASN MET LYS TYR SEQRES 29 A 423 ASP ALA ILE THR GLY SER GLY ILE GLU VAL VAL GLU ARG SEQRES 30 A 423 VAL ASP LEU PRO ALA ASP LEU ILE PRO ALA ASP ALA ARG SEQRES 31 A 423 VAL GLU ILE ASP ALA LYS MET ALA ALA GLY TYR PHE THR SEQRES 32 A 423 PRO GLY ALA VAL PRO ASP ALA ASP GLU LEU ALA LYS VAL SEQRES 33 A 423 LYS GLY ARG GLU LEU ASP GLY SEQRES 1 B 423 MET SER ALA GLU SER VAL ALA ALA THR PRO GLU SER ALA SEQRES 2 B 423 GLY GLY HIS ILE ARG LEU THR SER HIS SER GLY GLY VAL SEQRES 3 B 423 GLY ALA LEU PRO ILE HIS TRP GLY ALA PRO THR ALA SER SEQRES 4 B 423 GLU ARG GLY PRO VAL VAL GLY THR THR THR ASN ARG ALA SEQRES 5 B 423 HIS ARG ASN VAL ILE GLY THR HIS SER GLY SER TYR SER SEQRES 6 B 423 ILE TYR ARG ALA LEU ALA VAL ALA SER GLY ALA LEU SER SEQRES 7 B 423 ARG HIS HIS LYS ALA ASP LEU THR ASP THR ALA PRO THR SEQRES 8 B 423 ASN ILE ILE GLY PRO TYR PRO GLN TRP SER GLN PRO GLY SEQRES 9 B 423 LYS ILE VAL SER LEU ASP PRO TRP GLY ALA THR VAL ALA SEQRES 10 B 423 GLU VAL PHE ALA ALA GLU LEU ALA ALA GLY HIS ASP ILE SEQRES 11 B 423 ARG PRO SER ILE ALA VAL THR LYS ALA HIS VAL ILE LEU SEQRES 12 B 423 PRO GLU VAL MET GLU ALA ILE GLN LYS GLY ARG LEU HIS SEQRES 13 B 423 PRO ASP GLY ARG PHE LEU LEU PRO SER GLY ALA ALA LEU SEQRES 14 B 423 VAL THR LYS ALA ALA ILE GLU PRO VAL TRP HIS LEU PRO SEQRES 15 B 423 GLY VAL ALA GLU ARG PHE HIS CYS SER GLU THR ASP LEU SEQRES 16 B 423 ARG ARG VAL LEU PHE GLU GLU THR GLY GLY MET TYR PRO SEQRES 17 B 423 GLU LEU VAL THR ARG SER ASP LEU GLU VAL PHE LEU PRO SEQRES 18 B 423 PRO ILE GLY GLY GLN THR VAL TYR ILE PHE GLY ASP ALA SEQRES 19 B 423 ARG ASP LEU ALA ASP PRO GLY VAL GLU LEU THR ALA ARG SEQRES 20 B 423 VAL HIS ASP GLU CYS ASN GLY SER ASP VAL PHE GLY SER SEQRES 21 B 423 ASP ILE CYS THR CYS ARG PRO TYR LEU THR HIS ALA ILE SEQRES 22 B 423 GLU GLU CYS ILE GLN GLY ALA GLN ARG GLY GLY VAL GLY SEQRES 23 B 423 LEU VAL ALA TYR SER ARG LYS GLU GLY ARG ALA LEU GLY SEQRES 24 B 423 GLU VAL THR LYS PHE LEU VAL TYR ASN ALA ARG LYS ARG SEQRES 25 B 423 GLN VAL GLY GLY ASP THR ALA ASP GLN TYR PHE ALA ARG SEQRES 26 B 423 THR GLU CYS VAL ALA GLY VAL GLN ASP MET ARG PHE GLN SEQRES 27 B 423 GLU MET MET PRO ASP VAL LEU HIS TRP LEU GLY VAL ARG SEQRES 28 B 423 LYS ILE HIS ARG LEU VAL SER MET SER ASN MET LYS TYR SEQRES 29 B 423 ASP ALA ILE THR GLY SER GLY ILE GLU VAL VAL GLU ARG SEQRES 30 B 423 VAL ASP LEU PRO ALA ASP LEU ILE PRO ALA ASP ALA ARG SEQRES 31 B 423 VAL GLU ILE ASP ALA LYS MET ALA ALA GLY TYR PHE THR SEQRES 32 B 423 PRO GLY ALA VAL PRO ASP ALA ASP GLU LEU ALA LYS VAL SEQRES 33 B 423 LYS GLY ARG GLU LEU ASP GLY HET ZN A 801 1 HET DPO A 802 9 HET GLY B 501 4 HET ZN B 502 1 HET DPO B 503 9 HETNAM ZN ZINC ION HETNAM DPO DIPHOSPHATE HETNAM GLY GLYCINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 DPO 2(O7 P2 4-) FORMUL 5 GLY C2 H5 N O2 FORMUL 8 HOH *1142(H2 O) HELIX 1 AA1 THR A 39 GLY A 44 1 6 HELIX 2 AA2 ASN A 52 ARG A 56 5 5 HELIX 3 AA3 SER A 63 SER A 65 5 3 HELIX 4 AA4 TYR A 66 SER A 76 1 11 HELIX 5 AA5 TYR A 99 GLN A 104 5 6 HELIX 6 AA6 THR A 117 PHE A 122 1 6 HELIX 7 AA7 PHE A 122 ALA A 128 1 7 HELIX 8 AA8 LEU A 145 LYS A 154 1 10 HELIX 9 AA9 LEU A 183 PHE A 190 1 8 HELIX 10 AB1 SER A 193 THR A 205 1 13 HELIX 11 AB2 PRO A 210 ARG A 215 1 6 HELIX 12 AB3 ASP A 235 ASP A 241 5 7 HELIX 13 AB4 CYS A 254 VAL A 259 1 6 HELIX 14 AB5 THR A 266 ARG A 284 1 19 HELIX 15 AB6 LYS A 295 LEU A 300 1 6 HELIX 16 AB7 GLY A 301 GLN A 315 1 15 HELIX 17 AB8 THR A 320 ASP A 322 5 3 HELIX 18 AB9 GLN A 323 GLY A 333 1 11 HELIX 19 AC1 PHE A 339 MET A 343 5 5 HELIX 20 AC2 PRO A 344 LEU A 350 1 7 HELIX 21 AC3 SER A 362 SER A 372 1 11 HELIX 22 AC4 PRO A 383 ILE A 387 5 5 HELIX 23 AC5 ALA A 391 ALA A 401 1 11 HELIX 24 AC6 ASP A 411 ALA A 416 1 6 HELIX 25 AC7 THR B 39 GLY B 44 1 6 HELIX 26 AC8 ASN B 52 ARG B 56 5 5 HELIX 27 AC9 SER B 63 SER B 65 5 3 HELIX 28 AD1 TYR B 66 SER B 76 1 11 HELIX 29 AD2 TYR B 99 GLN B 104 5 6 HELIX 30 AD3 THR B 117 PHE B 122 1 6 HELIX 31 AD4 PHE B 122 ALA B 128 1 7 HELIX 32 AD5 LEU B 145 LYS B 154 1 10 HELIX 33 AD6 LEU B 183 PHE B 190 1 8 HELIX 34 AD7 SER B 193 THR B 205 1 13 HELIX 35 AD8 PRO B 210 ARG B 215 1 6 HELIX 36 AD9 ASP B 235 ASP B 241 5 7 HELIX 37 AE1 CYS B 254 VAL B 259 1 6 HELIX 38 AE2 THR B 266 ARG B 284 1 19 HELIX 39 AE3 GLY B 301 GLN B 315 1 15 HELIX 40 AE4 THR B 320 ASP B 322 5 3 HELIX 41 AE5 GLN B 323 GLY B 333 1 11 HELIX 42 AE6 PHE B 339 MET B 343 5 5 HELIX 43 AE7 PRO B 344 LEU B 350 1 7 HELIX 44 AE8 SER B 362 SER B 372 1 11 HELIX 45 AE9 PRO B 383 ILE B 387 5 5 HELIX 46 AF1 ALA B 391 ALA B 401 1 11 HELIX 47 AF2 ASP B 411 LYS B 417 1 7 SHEET 1 AA1 3 ILE A 59 GLY A 60 0 SHEET 2 AA1 3 VAL A 220 LEU A 222 1 O LEU A 222 N ILE A 59 SHEET 3 AA1 3 TRP A 181 HIS A 182 -1 N TRP A 181 O PHE A 221 SHEET 1 AA2 7 ILE A 136 VAL A 143 0 SHEET 2 AA2 7 ALA A 170 ILE A 177 -1 O LYS A 174 N THR A 139 SHEET 3 AA2 7 GLN A 228 PHE A 233 -1 O ILE A 232 N THR A 173 SHEET 4 AA2 7 VAL A 287 SER A 293 -1 O VAL A 290 N TYR A 231 SHEET 5 AA2 7 LEU A 246 ASP A 252 1 N HIS A 251 O ALA A 291 SHEET 6 AA2 7 LYS A 354 LEU A 358 1 O ARG A 357 N ALA A 248 SHEET 7 AA2 7 GLU A 375 ARG A 379 1 O GLU A 375 N ILE A 355 SHEET 1 AA3 3 ILE B 59 GLY B 60 0 SHEET 2 AA3 3 VAL B 220 LEU B 222 1 O LEU B 222 N ILE B 59 SHEET 3 AA3 3 TRP B 181 HIS B 182 -1 N TRP B 181 O PHE B 221 SHEET 1 AA4 7 ILE B 136 VAL B 143 0 SHEET 2 AA4 7 ALA B 170 ILE B 177 -1 O LYS B 174 N THR B 139 SHEET 3 AA4 7 GLN B 228 PHE B 233 -1 O ILE B 232 N THR B 173 SHEET 4 AA4 7 VAL B 287 SER B 293 -1 O VAL B 290 N TYR B 231 SHEET 5 AA4 7 LEU B 246 ASP B 252 1 N HIS B 251 O ALA B 291 SHEET 6 AA4 7 LYS B 354 LEU B 358 1 O ARG B 357 N ALA B 248 SHEET 7 AA4 7 GLU B 375 ARG B 379 1 O GLU B 375 N ILE B 355 LINK SG CYS A 254 ZN ZN A 801 1555 1555 2.29 LINK SG CYS A 265 ZN ZN A 801 1555 1555 2.29 LINK SG CYS A 267 ZN ZN A 801 1555 1555 2.29 LINK ZN ZN A 801 O HOH A1334 1555 1555 2.18 LINK SG CYS B 254 ZN ZN B 502 1555 1555 2.29 LINK SG CYS B 265 ZN ZN B 502 1555 1555 2.28 LINK SG CYS B 267 ZN ZN B 502 1555 1555 2.29 CISPEP 1 GLY A 97 PRO A 98 0 0.49 CISPEP 2 GLY B 97 PRO B 98 0 -0.36 CRYST1 115.152 115.152 283.489 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.005014 0.000000 0.00000 SCALE2 0.000000 0.010028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003527 0.00000