HEADER DNA BINDING PROTEIN 07-APR-21 7EL3 TITLE CRYSTAL STRUCTURE OF HPAR-DNA COMPLEX FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOPROTOCATECHUATE DEGRADATION OPERON REGULATOR HPAR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHAINS: C; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CHAINS: D; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: HPAR, EWO92_01730, EWO96_02085, EWP49_02085, FD887_17210; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII ZW85-1; SOURCE 10 ORGANISM_TAXID: 1400867; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII ZW85-1; SOURCE 14 ORGANISM_TAXID: 1400867 KEYWDS MARR FAMILY OF TRANSCRIPTION REGULATORS, TRANSCRIPTION FACTOR IN HPA- KEYWDS 2 DEGRADATION PATHWAY, ACINETOBACTER BAUMANNII, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PERMSIRIVISARN,D.PAKOTIPRAPHA REVDAT 3 29-NOV-23 7EL3 1 REMARK REVDAT 2 22-JUN-22 7EL3 1 JRNL REVDAT 1 19-JAN-22 7EL3 0 JRNL AUTH P.PERMSIRIVISARN,A.YUENYAO,N.PRAMANPOL, JRNL AUTH 2 R.CHAROENWATTANASATIEN,W.SUGINTA,P.CHAIYEN,D.PAKOTIPRAPHA JRNL TITL MECHANISM OF TRANSCRIPTION REGULATION BY ACINETOBACTER JRNL TITL 2 BAUMANNII HPAR IN THE CATABOLISM OF P-HYDROXYPHENYLACETATE. JRNL REF FEBS J. V. 289 3217 2022 JRNL REFN ISSN 1742-464X JRNL PMID 34967505 JRNL DOI 10.1111/FEBS.16340 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 52376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 4914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6100 - 5.2700 0.94 3236 155 0.1569 0.1612 REMARK 3 2 5.2700 - 4.1900 0.98 3476 133 0.1370 0.1400 REMARK 3 3 4.1900 - 3.6600 0.98 3264 233 0.1304 0.1717 REMARK 3 4 3.6600 - 3.3300 0.98 3332 228 0.1414 0.1685 REMARK 3 5 3.3300 - 3.0900 0.96 3270 231 0.1659 0.1923 REMARK 3 6 3.0900 - 2.9100 0.97 3278 167 0.1822 0.1946 REMARK 3 7 2.9100 - 2.7600 0.97 3361 153 0.1856 0.2219 REMARK 3 8 2.7600 - 2.6400 0.97 3346 144 0.1833 0.2432 REMARK 3 9 2.6400 - 2.5400 0.97 3387 160 0.1846 0.2279 REMARK 3 10 2.5400 - 2.4500 0.97 3349 139 0.1731 0.1837 REMARK 3 11 2.4500 - 2.3700 0.96 3199 166 0.1681 0.2426 REMARK 3 12 2.3700 - 2.3100 0.96 3322 202 0.1715 0.2014 REMARK 3 13 2.3100 - 2.2500 0.96 3309 191 0.1648 0.1903 REMARK 3 14 2.2500 - 2.1900 0.95 3265 171 0.1658 0.2208 REMARK 3 15 2.1900 - 2.1400 0.96 3303 132 0.1663 0.1940 REMARK 3 16 2.1400 - 2.1000 0.95 3376 161 0.1642 0.1987 REMARK 3 17 2.1000 - 2.0500 0.95 3197 146 0.1704 0.2281 REMARK 3 18 2.0500 - 2.0200 0.95 3325 192 0.1698 0.2095 REMARK 3 19 2.0200 - 1.9800 0.94 3134 164 0.1720 0.2288 REMARK 3 20 1.9800 - 1.9500 0.94 3316 181 0.1769 0.2285 REMARK 3 21 1.9500 - 1.9100 0.94 3205 156 0.1765 0.1997 REMARK 3 22 1.9100 - 1.8900 0.94 3275 140 0.1796 0.1953 REMARK 3 23 1.8900 - 1.8600 0.94 3256 131 0.1775 0.2132 REMARK 3 24 1.8600 - 1.8300 0.93 3209 150 0.1829 0.2149 REMARK 3 25 1.8300 - 1.8100 0.94 3294 138 0.1920 0.2096 REMARK 3 26 1.8100 - 1.7800 0.92 3145 134 0.1967 0.2479 REMARK 3 27 1.7800 - 1.7600 0.93 3186 154 0.2001 0.2307 REMARK 3 28 1.7600 - 1.7400 0.92 3155 183 0.2164 0.2597 REMARK 3 29 1.7400 - 1.7200 0.92 3176 155 0.2094 0.2383 REMARK 3 30 1.7200 - 1.7000 0.92 3141 124 0.2336 0.2697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.137 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.624 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3310 REMARK 3 ANGLE : 1.236 4645 REMARK 3 CHIRALITY : 0.064 532 REMARK 3 PLANARITY : 0.010 425 REMARK 3 DIHEDRAL : 26.676 750 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6094 -7.7284 -4.8003 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.1374 REMARK 3 T33: 0.1976 T12: 0.0256 REMARK 3 T13: -0.0334 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.7085 L22: 4.5076 REMARK 3 L33: 3.0146 L12: -0.5474 REMARK 3 L13: -0.6738 L23: 1.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0217 S13: 0.1060 REMARK 3 S21: 0.0537 S22: 0.0861 S23: -0.3625 REMARK 3 S31: 0.1408 S32: 0.0360 S33: -0.1221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3403 -18.1660 -22.7990 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.2815 REMARK 3 T33: 0.2302 T12: 0.0779 REMARK 3 T13: 0.0015 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.6663 L22: 5.2174 REMARK 3 L33: 2.5438 L12: -2.1533 REMARK 3 L13: -1.1070 L23: 2.2838 REMARK 3 S TENSOR REMARK 3 S11: 0.4338 S12: 0.2282 S13: 0.1909 REMARK 3 S21: -0.8009 S22: -0.3678 S23: -0.5579 REMARK 3 S31: -0.2203 S32: -0.1200 S33: -0.1189 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7683 -13.6115 -6.2454 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.2165 REMARK 3 T33: 0.4574 T12: 0.0036 REMARK 3 T13: -0.0009 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 1.5844 L22: 3.5033 REMARK 3 L33: 2.9291 L12: -0.2088 REMARK 3 L13: 0.1686 L23: 0.4182 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: -0.0522 S13: -0.3412 REMARK 3 S21: -0.0417 S22: -0.3369 S23: 0.3794 REMARK 3 S31: 0.7184 S32: -0.0937 S33: 0.0579 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7065 7.5969 -8.1719 REMARK 3 T TENSOR REMARK 3 T11: 0.1589 T22: 0.1220 REMARK 3 T33: 0.1380 T12: 0.0192 REMARK 3 T13: -0.0227 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.0553 L22: 3.2065 REMARK 3 L33: 2.0472 L12: -0.4451 REMARK 3 L13: 0.9681 L23: 0.8733 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: 0.1151 S13: -0.0095 REMARK 3 S21: -0.2433 S22: -0.0497 S23: 0.0458 REMARK 3 S31: -0.0819 S32: -0.0400 S33: 0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9009 20.5488 -5.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.2104 REMARK 3 T33: 0.3661 T12: -0.0093 REMARK 3 T13: 0.0310 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 4.6817 L22: 7.7893 REMARK 3 L33: 3.6294 L12: -2.8303 REMARK 3 L13: -2.2908 L23: 5.1357 REMARK 3 S TENSOR REMARK 3 S11: 0.3218 S12: 0.0930 S13: 0.4819 REMARK 3 S21: -0.6865 S22: 0.0648 S23: -0.4189 REMARK 3 S31: -0.9491 S32: 0.0529 S33: -0.3264 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0355 8.7022 -14.2321 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.2022 REMARK 3 T33: 0.2915 T12: 0.0982 REMARK 3 T13: -0.0516 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.7090 L22: 1.6787 REMARK 3 L33: 1.8082 L12: 0.0567 REMARK 3 L13: 0.0927 L23: 0.6126 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.2582 S13: -0.1945 REMARK 3 S21: -0.3821 S22: -0.0330 S23: 0.0931 REMARK 3 S31: -0.2815 S32: -0.0740 S33: 0.0125 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2815 -4.1241 -1.8304 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2397 REMARK 3 T33: 0.4766 T12: 0.0618 REMARK 3 T13: 0.0209 T23: -0.1107 REMARK 3 L TENSOR REMARK 3 L11: 7.6939 L22: 1.4838 REMARK 3 L33: 4.9261 L12: -0.0462 REMARK 3 L13: 3.0587 L23: -0.2274 REMARK 3 S TENSOR REMARK 3 S11: -0.5403 S12: -0.6147 S13: 0.2940 REMARK 3 S21: 0.1845 S22: 0.0961 S23: 0.0860 REMARK 3 S31: -0.5891 S32: -0.4047 S33: 0.2776 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2187 -4.2759 -0.4908 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1920 REMARK 3 T33: 0.3552 T12: -0.0071 REMARK 3 T13: -0.0020 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 3.3726 L22: 3.7098 REMARK 3 L33: 3.5253 L12: -2.2143 REMARK 3 L13: 3.1165 L23: -2.9649 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.0442 S13: 0.0624 REMARK 3 S21: 0.2978 S22: -0.0886 S23: 0.3692 REMARK 3 S31: -0.3501 S32: 0.1692 S33: 0.2163 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8736 -18.1004 4.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2130 REMARK 3 T33: 0.1842 T12: 0.0462 REMARK 3 T13: 0.0101 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.0996 L22: 4.6461 REMARK 3 L33: 2.5181 L12: -0.8208 REMARK 3 L13: -1.1176 L23: 1.6317 REMARK 3 S TENSOR REMARK 3 S11: -0.1964 S12: -0.2230 S13: 0.0924 REMARK 3 S21: 0.5874 S22: 0.0874 S23: 0.2211 REMARK 3 S31: 0.0883 S32: -0.0606 S33: 0.0714 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4341 -23.6687 -9.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.1346 REMARK 3 T33: 0.1875 T12: 0.0275 REMARK 3 T13: -0.0506 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 5.2099 L22: 6.6608 REMARK 3 L33: 2.8135 L12: 0.4079 REMARK 3 L13: -1.4196 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.0884 S12: 0.1388 S13: -0.3143 REMARK 3 S21: -0.1255 S22: -0.0141 S23: 0.5418 REMARK 3 S31: 0.3109 S32: -0.2710 S33: 0.0232 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0996 -25.7800 -6.7838 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.1562 REMARK 3 T33: 0.1937 T12: 0.0336 REMARK 3 T13: -0.0467 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.1799 L22: 3.8664 REMARK 3 L33: 2.9320 L12: -0.6731 REMARK 3 L13: -0.1983 L23: 0.8244 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: -0.0284 S13: -0.1243 REMARK 3 S21: 0.2933 S22: 0.0293 S23: 0.0040 REMARK 3 S31: 0.1714 S32: 0.0617 S33: -0.0959 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5398 -19.9249 10.6484 REMARK 3 T TENSOR REMARK 3 T11: 0.5395 T22: 0.3946 REMARK 3 T33: 0.3809 T12: -0.0631 REMARK 3 T13: 0.1444 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.5939 L22: 6.4570 REMARK 3 L33: 2.5977 L12: -4.2492 REMARK 3 L13: -0.2334 L23: 0.3395 REMARK 3 S TENSOR REMARK 3 S11: -0.2492 S12: -0.7223 S13: -0.4334 REMARK 3 S21: 0.8658 S22: 0.2811 S23: 0.8055 REMARK 3 S31: 0.3725 S32: -0.1913 S33: 0.0020 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2198 -14.2804 -5.4176 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2024 REMARK 3 T33: 0.6074 T12: -0.0257 REMARK 3 T13: -0.0264 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 4.8262 L22: 3.2030 REMARK 3 L33: 6.7540 L12: 1.2202 REMARK 3 L13: -3.1705 L23: -2.7689 REMARK 3 S TENSOR REMARK 3 S11: -0.2164 S12: 0.4327 S13: -0.4437 REMARK 3 S21: -0.4652 S22: -0.0289 S23: 0.2231 REMARK 3 S31: 0.6829 S32: -0.4752 S33: 0.3443 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0111 -17.1803 -19.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.2241 REMARK 3 T33: 0.1639 T12: 0.0489 REMARK 3 T13: 0.0039 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.8293 L22: 0.9692 REMARK 3 L33: 1.7689 L12: -0.6588 REMARK 3 L13: 0.0163 L23: -0.0302 REMARK 3 S TENSOR REMARK 3 S11: 0.2880 S12: 0.3206 S13: -0.0929 REMARK 3 S21: -0.3625 S22: -0.0403 S23: -0.1448 REMARK 3 S31: -0.0344 S32: -0.1762 S33: -0.1030 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5233 7.3871 6.9066 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.2407 REMARK 3 T33: 0.2224 T12: 0.0205 REMARK 3 T13: -0.0714 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.3198 L22: 3.3554 REMARK 3 L33: 0.4135 L12: -0.5568 REMARK 3 L13: -0.0192 L23: 0.9191 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.1708 S13: 0.0641 REMARK 3 S21: 0.4694 S22: 0.1412 S23: -0.4752 REMARK 3 S31: 0.0600 S32: 0.0418 S33: -0.1431 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7025 10.5874 10.7599 REMARK 3 T TENSOR REMARK 3 T11: 0.3581 T22: 0.2474 REMARK 3 T33: 0.2473 T12: 0.0018 REMARK 3 T13: -0.0597 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.5305 L22: 2.2914 REMARK 3 L33: 2.9700 L12: 0.5131 REMARK 3 L13: 1.2353 L23: 1.4887 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.2034 S13: -0.0220 REMARK 3 S21: 0.5660 S22: 0.1001 S23: -0.1842 REMARK 3 S31: 0.1026 S32: -0.1408 S33: -0.0881 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021568. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 27.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.02200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM HEPES; MOPS, PH 7.5, 20 REMARK 280 MM DL-GLUTAMIC ACID, 20 MM DL-ALANINE, 20 MM GLYCINE, 20 MM DL- REMARK 280 LYSINE, 20 MM DL-SERINE, 20 % (V/V) GLYCEROL AND 10 % (V/V) PEG REMARK 280 4000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 141 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 ARG B 5 REMARK 465 ASN B 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 215 O HOH B 294 1.96 REMARK 500 O HOH B 273 O HOH B 312 2.01 REMARK 500 O HOH A 204 O HOH B 274 2.04 REMARK 500 O HOH B 285 O HOH B 304 2.06 REMARK 500 OE2 GLU B 123 O HOH B 201 2.06 REMARK 500 O HOH B 201 O HOH B 227 2.13 REMARK 500 O HOH D 241 O HOH D 288 2.16 REMARK 500 O HOH A 307 O HOH B 307 2.16 REMARK 500 O HOH B 294 O HOH D 271 2.16 REMARK 500 O HOH A 228 O HOH A 308 2.16 REMARK 500 O HOH C 150 O HOH C 158 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 13 O3' DA D 13 C3' -0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 12 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 47 -55.26 77.97 REMARK 500 GLU B 47 -52.59 75.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 293 DISTANCE = 6.29 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7EL2 RELATED DB: PDB DBREF1 7EL3 A 1 141 UNP A0A4Q4GPX4_ACIBA DBREF2 7EL3 A A0A4Q4GPX4 1 141 DBREF1 7EL3 B 1 141 UNP A0A4Q4GPX4_ACIBA DBREF2 7EL3 B A0A4Q4GPX4 1 141 DBREF 7EL3 C 1 23 PDB 7EL3 7EL3 1 23 DBREF 7EL3 D 1 23 PDB 7EL3 7EL3 1 23 SEQRES 1 A 141 MET LYS PRO ILE ARG PRO SER LEU THR LEU ALA LEU LEU SEQRES 2 A 141 GLU ALA ARG GLU ALA ILE MET SER HIS PHE ARG PRO ALA SEQRES 3 A 141 LEU ASN GLU VAL GLY LEU THR GLU GLN GLN TRP ARG ILE SEQRES 4 A 141 ILE ARG ILE LEU TYR GLN TYR GLU GLU LEU GLU SER ASN SEQRES 5 A 141 GLN LEU ALA GLU LEU ALA CYS ILE LEU LYS PRO SER LEU SEQRES 6 A 141 THR GLY ILE LEU ASN ARG MET VAL GLU GLN LYS LEU ILE SEQRES 7 A 141 GLN LYS ARG LYS ASP TYR ASP ASP GLN ARG ILE SER LEU SEQRES 8 A 141 ILE SER LEU THR GLU SER GLY LEU GLU CYS PHE LYS THR SEQRES 9 A 141 GLN ALA VAL LYS MET GLU ALA SER TYR GLN LYS ILE GLN SEQRES 10 A 141 GLU GLN TYR GLY GLU GLU LYS MET LYS GLN LEU LEU GLU SEQRES 11 A 141 LEU LEU LYS ASP LEU SER LYS ILE LYS LEU ASN SEQRES 1 B 141 MET LYS PRO ILE ARG PRO SER LEU THR LEU ALA LEU LEU SEQRES 2 B 141 GLU ALA ARG GLU ALA ILE MET SER HIS PHE ARG PRO ALA SEQRES 3 B 141 LEU ASN GLU VAL GLY LEU THR GLU GLN GLN TRP ARG ILE SEQRES 4 B 141 ILE ARG ILE LEU TYR GLN TYR GLU GLU LEU GLU SER ASN SEQRES 5 B 141 GLN LEU ALA GLU LEU ALA CYS ILE LEU LYS PRO SER LEU SEQRES 6 B 141 THR GLY ILE LEU ASN ARG MET VAL GLU GLN LYS LEU ILE SEQRES 7 B 141 GLN LYS ARG LYS ASP TYR ASP ASP GLN ARG ILE SER LEU SEQRES 8 B 141 ILE SER LEU THR GLU SER GLY LEU GLU CYS PHE LYS THR SEQRES 9 B 141 GLN ALA VAL LYS MET GLU ALA SER TYR GLN LYS ILE GLN SEQRES 10 B 141 GLU GLN TYR GLY GLU GLU LYS MET LYS GLN LEU LEU GLU SEQRES 11 B 141 LEU LEU LYS ASP LEU SER LYS ILE LYS LEU ASN SEQRES 1 C 23 DA DT DA DT DA DG DT DT DA DA DT DA DT SEQRES 2 C 23 DG DT DT DA DA DC DT DA DA DT SEQRES 1 D 23 DA DT DT DA DG DT DT DA DA DC DA DT DA SEQRES 2 D 23 DT DT DA DA DC DT DA DT DA DT HET GOL D 101 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *427(H2 O) HELIX 1 AA1 SER A 7 SER A 21 1 15 HELIX 2 AA2 PHE A 23 GLY A 31 1 9 HELIX 3 AA3 THR A 33 GLU A 47 1 15 HELIX 4 AA4 SER A 51 CYS A 59 1 9 HELIX 5 AA5 LEU A 61 GLN A 75 1 15 HELIX 6 AA6 THR A 95 GLY A 121 1 27 HELIX 7 AA7 GLY A 121 LYS A 137 1 17 HELIX 8 AA8 SER B 7 SER B 21 1 15 HELIX 9 AA9 PHE B 23 GLY B 31 1 9 HELIX 10 AB1 THR B 33 GLU B 47 1 15 HELIX 11 AB2 SER B 51 CYS B 59 1 9 HELIX 12 AB3 LEU B 61 GLN B 75 1 15 HELIX 13 AB4 THR B 95 GLY B 121 1 27 HELIX 14 AB5 GLY B 121 LYS B 137 1 17 SHEET 1 AA1 3 GLU A 48 GLU A 50 0 SHEET 2 AA1 3 ASP A 86 LEU A 94 -1 O ILE A 92 N LEU A 49 SHEET 3 AA1 3 ILE A 78 ASP A 83 -1 N ARG A 81 O LEU A 91 SHEET 1 AA2 3 GLU B 48 GLU B 50 0 SHEET 2 AA2 3 ASP B 86 LEU B 94 -1 O ILE B 92 N LEU B 49 SHEET 3 AA2 3 ILE B 78 ASP B 83 -1 N ARG B 81 O LEU B 91 CRYST1 47.423 55.150 57.072 81.14 66.79 67.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021087 -0.008535 -0.008978 0.00000 SCALE2 0.000000 0.019561 -0.000144 0.00000 SCALE3 0.000000 0.000000 0.019065 0.00000