HEADER OXIDOREDUCTASE 13-APR-21 7EME TITLE PUTATIVE LEPTOSPIRA INTERROGANS RECOMBINANT L-AMINO ACID OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)/FAD-DEPENDENT OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA INTERROGANS; SOURCE 3 ORGANISM_TAXID: 173; SOURCE 4 GENE: E4414_19605; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS LEPTOSPIRA INTERROGANS, L-AMINO ACID OXIDASE, FAD-DEPENDENT KEYWDS 2 OXIDOREDUCTASE, FLAVOPROTEIN, PUTATIVE AMINE OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.VAIGUNDAN,I.YUVARAJ,P.R.KRISHNASWAMY,K.SEKAR,M.R.N.MURTHY,P.SUNITA REVDAT 3 29-MAY-24 7EME 1 REMARK REVDAT 2 01-MAR-23 7EME 1 JRNL REVDAT 1 18-AUG-21 7EME 0 JRNL AUTH D.VAIGUNDAN,I.YUVARAJ,P.SUNITA,K.SEKAR,M.R.N.MURTHY, JRNL AUTH 2 P.R.KRISHNASWAMY JRNL TITL STRUCTURAL CHARACTERIZATION OF A PUTATIVE RECOMBINANT JRNL TITL 2 L-AMINO ACID OXIDASE FROM LEPTOSPIRA INTERROGANS JRNL REF CURR.SCI. V. 123 895 2022 JRNL REFN ISSN 0011-3891 JRNL DOI 10.18520/CS/V123/I7/895-906 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.VAIGUNDAN,P.R.KRISHNASWAMY REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF A PUTATIVE RECOMBINANT REMARK 1 TITL 2 L-AMINO ACID OXIDASE FROM LEPTOSPIRA INTERROGANS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 69277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3634 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1620 REMARK 3 BIN FREE R VALUE SET COUNT : 227 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 737 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6508 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6115 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8856 ; 1.643 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14021 ; 1.493 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 839 ; 6.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;32.763 ;22.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1075 ;12.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;16.631 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7410 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1492 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300019228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000, MICROBATCH, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.87800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.95800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.11450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.95800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.87800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.11450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 PHE A 8 REMARK 465 ILE A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 GLY A 12 REMARK 465 ILE A 13 REMARK 465 LEU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ILE A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 GLY A 24 REMARK 465 ILE A 25 REMARK 465 LYS A 26 REMARK 465 LEU A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 PHE B 8 REMARK 465 ILE B 9 REMARK 465 LYS B 10 REMARK 465 LEU B 11 REMARK 465 GLY B 12 REMARK 465 ILE B 13 REMARK 465 LEU B 14 REMARK 465 THR B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 ILE B 19 REMARK 465 SER B 20 REMARK 465 GLY B 21 REMARK 465 LEU B 22 REMARK 465 PRO B 23 REMARK 465 GLY B 24 REMARK 465 ILE B 25 REMARK 465 LYS B 26 REMARK 465 LEU B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 GLN B 30 REMARK 465 GLY B 31 REMARK 465 THR B 32 REMARK 465 SER B 33 REMARK 465 SER B 34 REMARK 465 ARG B 35 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 104 CD NE CZ NH1 NH2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 135 NZ REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 149 NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ASN A 231 CG OD1 ND2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 THR A 275 OG1 CG2 REMARK 470 THR A 276 CG2 REMARK 470 GLU A 286 CD OE1 OE2 REMARK 470 ARG A 307 CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CD OE1 OE2 REMARK 470 GLU A 337 CB CG CD OE1 OE2 REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 ARG A 376 CD NE CZ NH1 NH2 REMARK 470 GLU A 377 CG CD OE1 OE2 REMARK 470 GLN A 379 CG CD OE1 NE2 REMARK 470 GLU A 387 CD OE1 OE2 REMARK 470 GLU A 428 CD OE1 OE2 REMARK 470 LYS B 36 CE NZ REMARK 470 LYS B 60 CD CE NZ REMARK 470 LYS B 109 CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLN B 156 CD OE1 NE2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 LYS B 183 CE NZ REMARK 470 GLU B 215 CD OE1 OE2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 GLU B 233 CD OE1 OE2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 LYS B 249 CD CE NZ REMARK 470 LYS B 258 CD CE NZ REMARK 470 LYS B 259 CD CE NZ REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 GLU B 308 CD OE1 OE2 REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 GLN B 374 CG CD OE1 NE2 REMARK 470 ARG B 376 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 377 CG CD OE1 OE2 REMARK 470 GLU B 387 CD OE1 OE2 REMARK 470 GLU B 428 CG CD OE1 OE2 REMARK 470 ARG B 442 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 447 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 121 100.46 -160.88 REMARK 500 ASN A 206 58.99 -142.02 REMARK 500 ASP A 417 -113.45 54.61 REMARK 500 ASP A 417 -109.54 48.42 REMARK 500 TYR B 210 79.70 -111.44 REMARK 500 GLN B 374 -84.73 -126.03 REMARK 500 ASP B 417 -108.10 55.36 REMARK 500 ASP B 417 -108.13 57.02 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7EME A 1 447 UNP A0A4D8SV19_LEPIR DBREF2 7EME A A0A4D8SV19 1 447 DBREF1 7EME B 1 447 UNP A0A4D8SV19_LEPIR DBREF2 7EME B A0A4D8SV19 1 447 SEQRES 1 A 447 MET LYS LEU SER ARG SER GLU PHE ILE LYS LEU GLY ILE SEQRES 2 A 447 LEU THR ALA ALA GLY ILE SER GLY LEU PRO GLY ILE LYS SEQRES 3 A 447 LEU SER ALA GLN GLY THR SER SER ARG LYS THR VAL ILE SEQRES 4 A 447 VAL MET GLY GLY GLY ILE SER GLY LEU TYR ALA SER TYR SEQRES 5 A 447 LEU LEU SER LYS THR GLY ILE LYS VAL GLN LEU ILE GLU SEQRES 6 A 447 ALA THR ASP ARG LEU GLY GLY ARG ILE ARG THR VAL THR SEQRES 7 A 447 ASP VAL SER GLY ASN PHE LEU ASP LEU GLY ALA GLU TRP SEQRES 8 A 447 ILE GLN ALA GLU HIS ARG THR ALA LYS SER LEU ILE ARG SEQRES 9 A 447 GLU LEU GLY LEU LYS THR THR ASP PHE GLU VAL GLN SER SEQRES 10 A 447 ASP LEU PHE PHE GLY SER TYR ARG LYS PHE GLY THR TRP SEQRES 11 A 447 ASP ILE SER PRO LYS SER GLN GLU ILE LEU ASN LYS LEU SEQRES 12 A 447 VAL GLN MET ASN SER LYS ILE ASN SER THR GLN GLN GLN SEQRES 13 A 447 GLU LEU ASP ARG ILE SER PHE TYR ASN PHE LEU ASN TYR SEQRES 14 A 447 GLN GLY MET SER LEU GLU ASP LEU ASN ILE LEU ASN PHE SEQRES 15 A 447 LYS TYR SER LEU TYR TYR GLY ASP SER LEU ARG SER LEU SEQRES 16 A 447 SER ALA GLN LYS VAL LEU SER ASP LEU VAL ASN PHE PRO SEQRES 17 A 447 LYS TYR ASN THR ARG VAL GLU GLY GLY MET GLU THR LEU SEQRES 18 A 447 THR ARG ALA LEU VAL SER SER LEU GLU ASN THR GLU ILE SEQRES 19 A 447 ILE PHE SER ASP PRO VAL VAL SER VAL SER GLN GLY GLU SEQRES 20 A 447 GLY LYS VAL ILE VAL THR THR VAL SER GLY LYS LYS ILE SEQRES 21 A 447 GLU GLY ASN ALA CYS ILE SER THR LEU PRO ALA ASN GLN SEQRES 22 A 447 LEU THR THR ILE GLN TRP ASP PRO GLU LEU ASP LYS GLU SEQRES 23 A 447 LYS LYS LEU SER ALA LEU ARG ILE ARG TYR SER ARG ILE SEQRES 24 A 447 TYR LYS THR PHE LEU MET LEU ARG GLU ALA PRO TRP THR SEQRES 25 A 447 ARG GLY SER PHE SER ALA TYR SER ASP SER VAL ALA GLY SEQRES 26 A 447 PHE ILE TYR ASP ALA GLY THR LYS ILE ASN SER GLU ASP SEQRES 27 A 447 LYS ILE LEU GLY MET ILE SER THR GLY ASP ARG TYR ASP SEQRES 28 A 447 ILE LEU ALA SER SER THR ASP ALA MET LYS VAL GLU TYR SEQRES 29 A 447 ILE ARG LEU ALA LEU GLU SER LEU GLY GLN GLY ARG GLU SEQRES 30 A 447 LEU GLN VAL LEU ARG ILE GLN SER SER GLU THR SER GLN SEQRES 31 A 447 SER LYS PHE ILE PRO THR GLY ILE ALA THR PHE PRO PRO SEQRES 32 A 447 GLY SER TYR GLY SER ILE ILE SER LEU LEU LYS PRO MET SEQRES 33 A 447 ASP ARG ILE PHE PHE ALA GLY GLU HIS THR ALA GLU LEU SEQRES 34 A 447 ASN GLY THR VAL GLU GLY ALA LEU ALA SER ALA ILE ARG SEQRES 35 A 447 ALA VAL ASN GLN VAL SEQRES 1 B 447 MET LYS LEU SER ARG SER GLU PHE ILE LYS LEU GLY ILE SEQRES 2 B 447 LEU THR ALA ALA GLY ILE SER GLY LEU PRO GLY ILE LYS SEQRES 3 B 447 LEU SER ALA GLN GLY THR SER SER ARG LYS THR VAL ILE SEQRES 4 B 447 VAL MET GLY GLY GLY ILE SER GLY LEU TYR ALA SER TYR SEQRES 5 B 447 LEU LEU SER LYS THR GLY ILE LYS VAL GLN LEU ILE GLU SEQRES 6 B 447 ALA THR ASP ARG LEU GLY GLY ARG ILE ARG THR VAL THR SEQRES 7 B 447 ASP VAL SER GLY ASN PHE LEU ASP LEU GLY ALA GLU TRP SEQRES 8 B 447 ILE GLN ALA GLU HIS ARG THR ALA LYS SER LEU ILE ARG SEQRES 9 B 447 GLU LEU GLY LEU LYS THR THR ASP PHE GLU VAL GLN SER SEQRES 10 B 447 ASP LEU PHE PHE GLY SER TYR ARG LYS PHE GLY THR TRP SEQRES 11 B 447 ASP ILE SER PRO LYS SER GLN GLU ILE LEU ASN LYS LEU SEQRES 12 B 447 VAL GLN MET ASN SER LYS ILE ASN SER THR GLN GLN GLN SEQRES 13 B 447 GLU LEU ASP ARG ILE SER PHE TYR ASN PHE LEU ASN TYR SEQRES 14 B 447 GLN GLY MET SER LEU GLU ASP LEU ASN ILE LEU ASN PHE SEQRES 15 B 447 LYS TYR SER LEU TYR TYR GLY ASP SER LEU ARG SER LEU SEQRES 16 B 447 SER ALA GLN LYS VAL LEU SER ASP LEU VAL ASN PHE PRO SEQRES 17 B 447 LYS TYR ASN THR ARG VAL GLU GLY GLY MET GLU THR LEU SEQRES 18 B 447 THR ARG ALA LEU VAL SER SER LEU GLU ASN THR GLU ILE SEQRES 19 B 447 ILE PHE SER ASP PRO VAL VAL SER VAL SER GLN GLY GLU SEQRES 20 B 447 GLY LYS VAL ILE VAL THR THR VAL SER GLY LYS LYS ILE SEQRES 21 B 447 GLU GLY ASN ALA CYS ILE SER THR LEU PRO ALA ASN GLN SEQRES 22 B 447 LEU THR THR ILE GLN TRP ASP PRO GLU LEU ASP LYS GLU SEQRES 23 B 447 LYS LYS LEU SER ALA LEU ARG ILE ARG TYR SER ARG ILE SEQRES 24 B 447 TYR LYS THR PHE LEU MET LEU ARG GLU ALA PRO TRP THR SEQRES 25 B 447 ARG GLY SER PHE SER ALA TYR SER ASP SER VAL ALA GLY SEQRES 26 B 447 PHE ILE TYR ASP ALA GLY THR LYS ILE ASN SER GLU ASP SEQRES 27 B 447 LYS ILE LEU GLY MET ILE SER THR GLY ASP ARG TYR ASP SEQRES 28 B 447 ILE LEU ALA SER SER THR ASP ALA MET LYS VAL GLU TYR SEQRES 29 B 447 ILE ARG LEU ALA LEU GLU SER LEU GLY GLN GLY ARG GLU SEQRES 30 B 447 LEU GLN VAL LEU ARG ILE GLN SER SER GLU THR SER GLN SEQRES 31 B 447 SER LYS PHE ILE PRO THR GLY ILE ALA THR PHE PRO PRO SEQRES 32 B 447 GLY SER TYR GLY SER ILE ILE SER LEU LEU LYS PRO MET SEQRES 33 B 447 ASP ARG ILE PHE PHE ALA GLY GLU HIS THR ALA GLU LEU SEQRES 34 B 447 ASN GLY THR VAL GLU GLY ALA LEU ALA SER ALA ILE ARG SEQRES 35 B 447 ALA VAL ASN GLN VAL HET FAD A 501 53 HET FAD B 501 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *737(H2 O) HELIX 1 AA1 GLY A 44 THR A 57 1 14 HELIX 2 AA2 HIS A 96 LEU A 106 1 11 HELIX 3 AA3 SER A 133 SER A 148 1 16 HELIX 4 AA4 ASN A 151 ASP A 159 1 9 HELIX 5 AA5 SER A 162 GLN A 170 1 9 HELIX 6 AA6 SER A 173 GLY A 189 1 17 HELIX 7 AA7 SER A 191 LEU A 195 5 5 HELIX 8 AA8 SER A 196 LEU A 204 1 9 HELIX 9 AA9 VAL A 205 PHE A 207 5 3 HELIX 10 AB1 MET A 218 SER A 228 1 11 HELIX 11 AB2 PRO A 270 ILE A 277 1 8 HELIX 12 AB3 ASP A 284 ILE A 294 1 11 HELIX 13 AB4 GLY A 347 SER A 355 1 9 HELIX 14 AB5 THR A 357 LEU A 372 1 16 HELIX 15 AB6 GLY A 407 LYS A 414 1 8 HELIX 16 AB7 GLY A 423 ALA A 427 5 5 HELIX 17 AB8 THR A 432 ASN A 445 1 14 HELIX 18 AB9 GLY B 44 THR B 57 1 14 HELIX 19 AC1 HIS B 96 LEU B 106 1 11 HELIX 20 AC2 SER B 133 ILE B 150 1 18 HELIX 21 AC3 ASN B 151 ASP B 159 1 9 HELIX 22 AC4 SER B 162 GLN B 170 1 9 HELIX 23 AC5 SER B 173 GLY B 189 1 17 HELIX 24 AC6 SER B 191 LEU B 195 5 5 HELIX 25 AC7 SER B 196 LEU B 204 1 9 HELIX 26 AC8 MET B 218 LEU B 229 1 12 HELIX 27 AC9 PRO B 270 ILE B 277 1 8 HELIX 28 AD1 ASP B 284 ILE B 294 1 11 HELIX 29 AD2 GLY B 347 SER B 356 1 10 HELIX 30 AD3 THR B 357 LEU B 372 1 16 HELIX 31 AD4 GLY B 407 LYS B 414 1 8 HELIX 32 AD5 GLY B 423 ALA B 427 5 5 HELIX 33 AD6 THR B 432 ASN B 445 1 14 SHEET 1 AA1 5 THR A 232 ILE A 235 0 SHEET 2 AA1 5 LYS A 60 ILE A 64 1 N LEU A 63 O ILE A 235 SHEET 3 AA1 5 THR A 37 MET A 41 1 N VAL A 40 O ILE A 64 SHEET 4 AA1 5 ALA A 264 SER A 267 1 O ILE A 266 N ILE A 39 SHEET 5 AA1 5 ILE A 419 PHE A 421 1 O PHE A 420 N SER A 267 SHEET 1 AA2 2 THR A 76 THR A 78 0 SHEET 2 AA2 2 PHE A 84 ASP A 86 -1 O LEU A 85 N VAL A 77 SHEET 1 AA3 2 THR A 110 ASP A 112 0 SHEET 2 AA3 2 THR A 212 VAL A 214 -1 O ARG A 213 N THR A 111 SHEET 1 AA4 7 TYR A 124 ARG A 125 0 SHEET 2 AA4 7 SER A 117 PHE A 120 -1 N LEU A 119 O ARG A 125 SHEET 3 AA4 7 SER A 317 SER A 320 1 O SER A 317 N ASP A 118 SHEET 4 AA4 7 PHE A 326 ASP A 329 -1 O ILE A 327 N ALA A 318 SHEET 5 AA4 7 LYS A 339 THR A 346 -1 O GLY A 342 N TYR A 328 SHEET 6 AA4 7 ILE A 299 LEU A 306 -1 N TYR A 300 O SER A 345 SHEET 7 AA4 7 VAL A 380 SER A 385 -1 O LEU A 381 N MET A 305 SHEET 1 AA5 4 LYS A 259 GLY A 262 0 SHEET 2 AA5 4 LYS A 249 THR A 254 -1 N VAL A 252 O ILE A 260 SHEET 3 AA5 4 VAL A 240 GLY A 246 -1 N VAL A 241 O THR A 253 SHEET 4 AA5 4 GLN A 278 ASP A 280 1 O GLN A 278 N VAL A 243 SHEET 1 AA6 2 ARG A 295 TYR A 296 0 SHEET 2 AA6 2 ALA A 399 THR A 400 -1 O THR A 400 N ARG A 295 SHEET 1 AA7 5 THR B 232 ILE B 235 0 SHEET 2 AA7 5 LYS B 60 ILE B 64 1 N LEU B 63 O ILE B 235 SHEET 3 AA7 5 THR B 37 MET B 41 1 N VAL B 40 O GLN B 62 SHEET 4 AA7 5 ALA B 264 SER B 267 1 O ILE B 266 N MET B 41 SHEET 5 AA7 5 ILE B 419 PHE B 421 1 O PHE B 420 N CYS B 265 SHEET 1 AA8 2 THR B 76 THR B 78 0 SHEET 2 AA8 2 PHE B 84 ASP B 86 -1 O LEU B 85 N VAL B 77 SHEET 1 AA9 2 THR B 110 ASP B 112 0 SHEET 2 AA9 2 THR B 212 VAL B 214 -1 O ARG B 213 N THR B 111 SHEET 1 AB1 7 TYR B 124 ARG B 125 0 SHEET 2 AB1 7 GLN B 116 PHE B 120 -1 N LEU B 119 O ARG B 125 SHEET 3 AB1 7 PHE B 316 SER B 320 1 O SER B 317 N ASP B 118 SHEET 4 AB1 7 PHE B 326 ASP B 329 -1 O ILE B 327 N ALA B 318 SHEET 5 AB1 7 LYS B 339 THR B 346 -1 O GLY B 342 N TYR B 328 SHEET 6 AB1 7 ILE B 299 LEU B 306 -1 N LEU B 306 O LYS B 339 SHEET 7 AB1 7 VAL B 380 SER B 385 -1 O LEU B 381 N MET B 305 SHEET 1 AB2 4 LYS B 259 GLY B 262 0 SHEET 2 AB2 4 LYS B 249 THR B 254 -1 N VAL B 252 O ILE B 260 SHEET 3 AB2 4 VAL B 240 GLY B 246 -1 N VAL B 241 O THR B 253 SHEET 4 AB2 4 GLN B 278 ASP B 280 1 O GLN B 278 N VAL B 243 SHEET 1 AB3 2 ARG B 295 TYR B 296 0 SHEET 2 AB3 2 ALA B 399 THR B 400 -1 O THR B 400 N ARG B 295 CISPEP 1 ASP A 280 PRO A 281 0 -0.16 CISPEP 2 ASP B 280 PRO B 281 0 2.35 CRYST1 51.756 106.229 139.916 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007147 0.00000