data_7EOK # _entry.id 7EOK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EOK pdb_00007eok 10.2210/pdb7eok/pdb WWPDB D_1300021887 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7EOK _pdbx_database_status.recvd_initial_deposition_date 2021-04-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Huang, K.Y.' 1 0000-0002-7508-5446 'Ren, A.M.' 2 0000-0002-5420-4899 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 1289 _citation.page_last 1295 _citation.title 'Structure-based investigation of fluorogenic Pepper aptamer.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-021-00884-6 _citation.pdbx_database_id_PubMed 34725509 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, K.' 1 ? primary 'Chen, X.' 2 ? primary 'Li, C.' 3 ? primary 'Song, Q.' 4 ? primary 'Li, H.' 5 ? primary 'Zhu, L.' 6 ? primary 'Yang, Y.' 7 ? primary 'Ren, A.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 127.080 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7EOK _cell.details ? _cell.formula_units_Z ? _cell.length_a 93.982 _cell.length_a_esd ? _cell.length_b 37.720 _cell.length_b_esd ? _cell.length_c 56.740 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7EOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Pepper (49-MER)' 15428.166 1 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn '4-[(~{Z})-1-cyano-2-[5-[2-(dimethylamino)ethyl-methyl-amino]pyrazin-2-yl]ethenyl]benzenecarbonitrile' 332.402 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 5 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGCACUGGCGCUGCGCCUUCGGGCGCCAAUCGUAGCGUGUCGGCGCC _entity_poly.pdbx_seq_one_letter_code_can GCGCACUGGCGCUGCGCCUUCGGGCGCCAAUCGUAGCGUGUCGGCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 C n 1 5 A n 1 6 C n 1 7 U n 1 8 G n 1 9 G n 1 10 C n 1 11 G n 1 12 C n 1 13 U n 1 14 G n 1 15 C n 1 16 G n 1 17 C n 1 18 C n 1 19 U n 1 20 U n 1 21 C n 1 22 G n 1 23 G n 1 24 G n 1 25 C n 1 26 G n 1 27 C n 1 28 C n 1 29 A n 1 30 A n 1 31 U n 1 32 C n 1 33 G n 1 34 U n 1 35 A n 1 36 G n 1 37 C n 1 38 G n 1 39 U n 1 40 G n 1 41 U n 1 42 C n 1 43 G n 1 44 G n 1 45 C n 1 46 G n 1 47 C n 1 48 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 48 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7EOK _struct_ref.pdbx_db_accession 7EOK _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7EOK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 48 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7EOK _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 49 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 49 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 J8L non-polymer . '4-[(~{Z})-1-cyano-2-[5-[2-(dimethylamino)ethyl-methyl-amino]pyrazin-2-yl]ethenyl]benzenecarbonitrile' ? 'C19 H20 N6' 332.402 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EOK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M ammonium chloride, 0.005 M magnesium chloride, 0.025 M HEPES, pH 7.0, 1.25 M 1,6-hexanediol, 40% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-11-09 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.102 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.102 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7EOK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4422 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.300 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.100 _reflns.pdbx_Rmerge_I_obs 0.147 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.164 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.163 _reflns.pdbx_Rpim_I_all 0.069 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 22403 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.700 2.800 ? ? ? ? ? ? 418 92.500 ? ? ? ? 0.661 ? ? ? ? ? ? ? ? 3.300 ? 0.608 ? ? 0.772 0.388 ? 1 1 0.771 ? ? ? ? ? ? ? ? ? ? 2.800 2.910 ? ? ? ? ? ? 415 96.300 ? ? ? ? 0.593 ? ? ? ? ? ? ? ? 3.800 ? 0.629 ? ? 0.685 0.334 ? 2 1 0.920 ? ? ? ? ? ? ? ? ? ? 2.910 3.040 ? ? ? ? ? ? 447 98.500 ? ? ? ? 0.392 ? ? ? ? ? ? ? ? 4.400 ? 0.801 ? ? 0.444 0.204 ? 3 1 0.971 ? ? ? ? ? ? ? ? ? ? 3.040 3.200 ? ? ? ? ? ? 445 97.400 ? ? ? ? 0.300 ? ? ? ? ? ? ? ? 4.700 ? 0.934 ? ? 0.337 0.151 ? 4 1 0.982 ? ? ? ? ? ? ? ? ? ? 3.200 3.400 ? ? ? ? ? ? 455 98.500 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 5.100 ? 1.220 ? ? 0.277 0.118 ? 5 1 0.989 ? ? ? ? ? ? ? ? ? ? 3.400 3.660 ? ? ? ? ? ? 420 95.200 ? ? ? ? 0.208 ? ? ? ? ? ? ? ? 5.300 ? 1.265 ? ? 0.231 0.099 ? 6 1 0.987 ? ? ? ? ? ? ? ? ? ? 3.660 4.030 ? ? ? ? ? ? 443 99.100 ? ? ? ? 0.200 ? ? ? ? ? ? ? ? 6.000 ? 1.326 ? ? 0.221 0.091 ? 7 1 0.989 ? ? ? ? ? ? ? ? ? ? 4.030 4.620 ? ? ? ? ? ? 462 99.600 ? ? ? ? 0.167 ? ? ? ? ? ? ? ? 6.200 ? 1.214 ? ? 0.182 0.072 ? 8 1 0.985 ? ? ? ? ? ? ? ? ? ? 4.620 5.810 ? ? ? ? ? ? 438 97.800 ? ? ? ? 0.124 ? ? ? ? ? ? ? ? 5.800 ? 1.273 ? ? 0.137 0.057 ? 9 1 0.990 ? ? ? ? ? ? ? ? ? ? 5.810 50.000 ? ? ? ? ? ? 479 97.800 ? ? ? ? 0.088 ? ? ? ? ? ? ? ? 5.800 ? 1.628 ? ? 0.098 0.042 ? 10 1 0.994 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 147.480 _refine.B_iso_mean 64.0061 _refine.B_iso_min 19.890 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7EOK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 45.2220 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4319 _refine.ls_number_reflns_R_free 228 _refine.ls_number_reflns_R_work 4091 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.1700 _refine.ls_percent_reflns_R_free 5.2800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2039 _refine.ls_R_factor_R_free 0.2414 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2019 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7EOG _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.5900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 45.2220 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1109 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 49 _refine_hist.pdbx_B_iso_mean_ligand 58.75 _refine_hist.pdbx_B_iso_mean_solvent 47.59 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1054 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.7000 3.4016 . . 116 2013 96.0000 . . . 0.3039 0.0000 0.2584 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4016 45.2220 . . 112 2078 97.0000 . . . 0.2168 0.0000 0.1825 . . . . . . . . . . . # _struct.entry_id 7EOK _struct.title 'Crystal structure of the Pepper aptamer in complex with HBC485' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EOK _struct_keywords.text 'Fluorescent RNA, Aptamer, HBC485, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 1 P ? ? ? 1_555 B GTP . "O3'" ? ? A G 2 A GTP 101 1_555 ? ? ? ? ? ? ? 1.562 ? ? metalc1 metalc ? ? A C 2 O2 ? ? ? 1_555 J MG . MG ? ? A C 3 A MG 109 4_556 ? ? ? ? ? ? ? 2.745 ? ? metalc2 metalc ? ? A C 6 OP2 ? ? ? 1_555 D MG . MG ? ? A C 7 A MG 103 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc3 metalc ? ? A U 7 OP2 ? ? ? 1_555 D MG . MG ? ? A U 8 A MG 103 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc4 metalc ? ? A C 28 "O3'" ? ? ? 1_555 J MG . MG ? ? A C 29 A MG 109 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc5 metalc ? ? A A 29 OP1 ? ? ? 1_555 J MG . MG ? ? A A 30 A MG 109 1_555 ? ? ? ? ? ? ? 2.465 ? ? metalc6 metalc ? ? A A 29 OP2 ? ? ? 1_555 K MG . MG ? ? A A 30 A MG 110 1_555 ? ? ? ? ? ? ? 2.456 ? ? metalc7 metalc ? ? A U 31 OP2 ? ? ? 1_555 F MG . MG ? ? A U 32 A MG 105 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc8 metalc ? ? A U 34 O4 ? ? ? 1_555 E MG . MG ? ? A U 35 A MG 104 1_555 ? ? ? ? ? ? ? 2.340 ? ? metalc9 metalc ? ? A A 35 OP2 ? ? ? 1_555 H MG . MG ? ? A A 36 A MG 107 1_555 ? ? ? ? ? ? ? 2.670 ? ? metalc10 metalc ? ? A G 36 OP2 ? ? ? 1_555 H MG . MG ? ? A G 37 A MG 107 1_555 ? ? ? ? ? ? ? 2.421 ? ? metalc11 metalc ? ? A C 37 OP2 ? ? ? 1_555 E MG . MG ? ? A C 38 A MG 104 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc12 metalc ? ? A C 42 OP2 ? ? ? 1_555 G MG . MG ? ? A C 43 A MG 106 1_555 ? ? ? ? ? ? ? 1.912 ? ? metalc13 metalc ? ? A G 43 OP2 ? ? ? 1_555 G MG . MG ? ? A G 44 A MG 106 1_555 ? ? ? ? ? ? ? 1.909 ? ? metalc14 metalc ? ? A C 47 O2 ? ? ? 1_555 J MG . MG ? ? A C 48 A MG 109 4_556 ? ? ? ? ? ? ? 2.664 ? ? metalc15 metalc ? ? A C 48 "O3'" ? ? ? 1_555 L MG . MG ? ? A C 49 A MG 111 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc16 metalc ? ? A C 48 "O2'" ? ? ? 1_555 L MG . MG ? ? A C 49 A MG 111 1_555 ? ? ? ? ? ? ? 1.867 ? ? metalc17 metalc ? ? B GTP . O3A ? ? ? 1_555 I MG . MG ? ? A GTP 101 A MG 108 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc18 metalc ? ? B GTP . O1A ? ? ? 1_555 I MG . MG ? ? A GTP 101 A MG 108 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 203 1_555 ? ? ? ? ? ? ? 2.306 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.032 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 201 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 208 1_555 ? ? ? ? ? ? ? 2.681 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 210 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 105 A HOH 215 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc25 metalc ? ? I MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 108 A HOH 211 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc26 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 109 A HOH 209 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc27 metalc ? ? K MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 110 A HOH 205 1_555 ? ? ? ? ? ? ? 2.271 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 2 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 2 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 2 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 3 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 3 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 3 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 4 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 4 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 4 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 5 A G 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 7 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 7 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 7 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 A G 40 N2 ? ? A U 8 A G 41 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A U 41 O4 ? ? A U 8 A U 42 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A U 41 N3 ? ? A U 8 A U 42 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog19 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 32 O2 ? ? A G 9 A C 33 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 32 N3 ? ? A G 9 A C 33 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog21 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 39 O2 ? ? A G 10 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 39 N3 ? ? A G 10 A U 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 38 N1 ? ? A C 11 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 38 O6 ? ? A C 11 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 38 N2 ? ? A C 11 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 12 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 13 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 14 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 14 A A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 15 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 15 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 15 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 16 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 16 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 16 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 17 A C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 31 N3 ? ? ? 1_555 A U 34 O4 ? ? A U 32 A U 35 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog50 hydrog ? ? A C 32 N4 ? ? ? 1_555 A U 39 O4 ? ? A C 33 A U 40 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog51 hydrog ? ? A G 33 N2 ? ? ? 1_555 A G 38 N7 ? ? A G 34 A G 39 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 7EOK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.010640 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008040 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026511 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022090 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 2 2 G G A . n A 1 2 C 2 3 3 C C A . n A 1 3 G 3 4 4 G G A . n A 1 4 C 4 5 5 C C A . n A 1 5 A 5 6 6 A A A . n A 1 6 C 6 7 7 C C A . n A 1 7 U 7 8 8 U U A . n A 1 8 G 8 9 9 G G A . n A 1 9 G 9 10 10 G G A . n A 1 10 C 10 11 11 C C A . n A 1 11 G 11 12 12 G G A . n A 1 12 C 12 13 13 C C A . n A 1 13 U 13 14 14 U U A . n A 1 14 G 14 15 15 G G A . n A 1 15 C 15 16 16 C C A . n A 1 16 G 16 17 17 G G A . n A 1 17 C 17 18 18 C C A . n A 1 18 C 18 19 19 C C A . n A 1 19 U 19 20 20 U U A . n A 1 20 U 20 21 21 U U A . n A 1 21 C 21 22 22 C C A . n A 1 22 G 22 23 23 G G A . n A 1 23 G 23 24 24 G G A . n A 1 24 G 24 25 25 G G A . n A 1 25 C 25 26 26 C C A . n A 1 26 G 26 27 27 G G A . n A 1 27 C 27 28 28 C C A . n A 1 28 C 28 29 29 C C A . n A 1 29 A 29 30 30 A A A . n A 1 30 A 30 31 31 A A A . n A 1 31 U 31 32 32 U U A . n A 1 32 C 32 33 33 C C A . n A 1 33 G 33 34 34 G G A . n A 1 34 U 34 35 35 U U A . n A 1 35 A 35 36 36 A A A . n A 1 36 G 36 37 37 G G A . n A 1 37 C 37 38 38 C C A . n A 1 38 G 38 39 39 G G A . n A 1 39 U 39 40 40 U U A . n A 1 40 G 40 41 41 G G A . n A 1 41 U 41 42 42 U U A . n A 1 42 C 42 43 43 C C A . n A 1 43 G 43 44 44 G G A . n A 1 44 G 44 45 45 G G A . n A 1 45 C 45 46 46 C C A . n A 1 46 G 46 47 47 G G A . n A 1 47 C 47 48 48 C C A . n A 1 48 C 48 49 49 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP 1 101 1 GTP GTP A . C 3 J8L 1 102 1 J8L LIG A . D 4 MG 1 103 1 MG MG A . E 4 MG 1 104 2 MG MG A . F 4 MG 1 105 3 MG MG A . G 4 MG 1 106 4 MG MG A . H 4 MG 1 107 5 MG MG A . I 4 MG 1 108 6 MG MG A . J 4 MG 1 109 7 MG MG A . K 4 MG 1 110 8 MG MG A . L 4 MG 1 111 9 MG MG A . M 5 HOH 1 201 6 HOH HOH A . M 5 HOH 2 202 12 HOH HOH A . M 5 HOH 3 203 10 HOH HOH A . M 5 HOH 4 204 18 HOH HOH A . M 5 HOH 5 205 21 HOH HOH A . M 5 HOH 6 206 4 HOH HOH A . M 5 HOH 7 207 1 HOH HOH A . M 5 HOH 8 208 3 HOH HOH A . M 5 HOH 9 209 20 HOH HOH A . M 5 HOH 10 210 16 HOH HOH A . M 5 HOH 11 211 14 HOH HOH A . M 5 HOH 12 212 15 HOH HOH A . M 5 HOH 13 213 2 HOH HOH A . M 5 HOH 14 214 11 HOH HOH A . M 5 HOH 15 215 8 HOH HOH A . M 5 HOH 16 216 13 HOH HOH A . M 5 HOH 17 217 7 HOH HOH A . M 5 HOH 18 218 17 HOH HOH A . M 5 HOH 19 219 19 HOH HOH A . M 5 HOH 20 220 9 HOH HOH A . M 5 HOH 21 221 5 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 470 ? 1 MORE -11 ? 1 'SSA (A^2)' 8330 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A C 2 ? A C 3 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 "O3'" ? A C 28 ? A C 29 ? 1_555 51.8 ? 2 O2 ? A C 2 ? A C 3 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 OP1 ? A A 29 ? A A 30 ? 1_555 51.8 ? 3 "O3'" ? A C 28 ? A C 29 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 OP1 ? A A 29 ? A A 30 ? 1_555 2.8 ? 4 O2 ? A C 2 ? A C 3 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O2 ? A C 47 ? A C 48 ? 1_555 90.7 ? 5 "O3'" ? A C 28 ? A C 29 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O2 ? A C 47 ? A C 48 ? 1_555 118.5 ? 6 OP1 ? A A 29 ? A A 30 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O2 ? A C 47 ? A C 48 ? 1_555 115.9 ? 7 O2 ? A C 2 ? A C 3 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O ? M HOH . ? A HOH 209 ? 1_555 46.6 ? 8 "O3'" ? A C 28 ? A C 29 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O ? M HOH . ? A HOH 209 ? 1_555 5.5 ? 9 OP1 ? A A 29 ? A A 30 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O ? M HOH . ? A HOH 209 ? 1_555 5.4 ? 10 O2 ? A C 47 ? A C 48 ? 1_555 MG ? J MG . ? A MG 109 ? 4_556 O ? M HOH . ? A HOH 209 ? 1_555 114.9 ? 11 OP2 ? A C 6 ? A C 7 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 OP2 ? A U 7 ? A U 8 ? 1_555 70.3 ? 12 OP2 ? A A 29 ? A A 30 ? 1_555 MG ? K MG . ? A MG 110 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 59.6 ? 13 OP2 ? A U 31 ? A U 32 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 56.7 ? 14 OP2 ? A U 31 ? A U 32 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 208 ? 1_555 76.0 ? 15 O ? M HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 208 ? 1_555 116.0 ? 16 OP2 ? A U 31 ? A U 32 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 68.8 ? 17 O ? M HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 90.6 ? 18 O ? M HOH . ? A HOH 208 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 210 ? 1_555 111.1 ? 19 OP2 ? A U 31 ? A U 32 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 103.7 ? 20 O ? M HOH . ? A HOH 201 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 60.7 ? 21 O ? M HOH . ? A HOH 208 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 175.1 ? 22 O ? M HOH . ? A HOH 210 ? 1_555 MG ? F MG . ? A MG 105 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 73.0 ? 23 O4 ? A U 34 ? A U 35 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 OP2 ? A C 37 ? A C 38 ? 1_555 79.9 ? 24 O4 ? A U 34 ? A U 35 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 160.8 ? 25 OP2 ? A C 37 ? A C 38 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 80.9 ? 26 O4 ? A U 34 ? A U 35 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 214 ? 1_555 140.1 ? 27 OP2 ? A C 37 ? A C 38 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 214 ? 1_555 140.0 ? 28 O ? M HOH . ? A HOH 203 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? M HOH . ? A HOH 214 ? 1_555 59.1 ? 29 OP2 ? A A 35 ? A A 36 ? 1_555 MG ? H MG . ? A MG 107 ? 1_555 OP2 ? A G 36 ? A G 37 ? 1_555 103.0 ? 30 OP2 ? A C 42 ? A C 43 ? 1_555 MG ? G MG . ? A MG 106 ? 1_555 OP2 ? A G 43 ? A G 44 ? 1_555 132.3 ? 31 "O3'" ? A C 48 ? A C 49 ? 1_555 MG ? L MG . ? A MG 111 ? 1_555 "O2'" ? A C 48 ? A C 49 ? 1_555 86.1 ? 32 O3A ? B GTP . ? A GTP 101 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O1A ? B GTP . ? A GTP 101 ? 1_555 56.6 ? 33 O3A ? B GTP . ? A GTP 101 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 111.6 ? 34 O1A ? B GTP . ? A GTP 101 ? 1_555 MG ? I MG . ? A MG 108 ? 1_555 O ? M HOH . ? A HOH 211 ? 1_555 60.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-11-24 2 'Structure model' 1 1 2022-02-16 3 'Structure model' 1 2 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 7EOK _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O5'" A G 2 ? ? "O3'" A GTP 101 ? ? 1.78 2 1 OP1 A G 2 ? ? "O3'" A GTP 101 ? ? 1.94 3 1 OP2 A U 32 ? ? O A HOH 201 ? ? 2.13 4 1 OP2 A G 2 ? ? "O3'" A GTP 101 ? ? 2.14 5 1 O A HOH 203 ? ? O A HOH 214 ? ? 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 16 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 U _pdbx_validate_symm_contact.auth_seq_id_2 20 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C5 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 3 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C4 _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 3 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N4 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.86 _pdbx_validate_rmsd_angle.angle_target_value 120.20 _pdbx_validate_rmsd_angle.angle_deviation 4.66 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 J8L C10 C N N 162 J8L C13 C Y N 163 J8L C15 C Y N 164 J8L C17 C N N 165 J8L C20 C N N 166 J8L C21 C N N 167 J8L C24 C N N 168 J8L C01 C Y N 169 J8L C02 C Y N 170 J8L C04 C Y N 171 J8L C05 C Y N 172 J8L C07 C N N 173 J8L C08 C N N 174 J8L C09 C Y N 175 J8L C12 C Y N 176 J8L C14 C Y N 177 J8L C16 C Y N 178 J8L C23 C N N 179 J8L C25 C N N 180 J8L N03 N Y N 181 J8L N06 N Y N 182 J8L N11 N N N 183 J8L N18 N N N 184 J8L N19 N N N 185 J8L N22 N N N 186 J8L H1 H N N 187 J8L H2 H N N 188 J8L H3 H N N 189 J8L H4 H N N 190 J8L H5 H N N 191 J8L H6 H N N 192 J8L H7 H N N 193 J8L H8 H N N 194 J8L H9 H N N 195 J8L H10 H N N 196 J8L H11 H N N 197 J8L H12 H N N 198 J8L H13 H N N 199 J8L H14 H N N 200 J8L H15 H N N 201 J8L H16 H N N 202 J8L H17 H N N 203 J8L H18 H N N 204 J8L H19 H N N 205 J8L H20 H N N 206 MG MG MG N N 207 U OP3 O N N 208 U P P N N 209 U OP1 O N N 210 U OP2 O N N 211 U "O5'" O N N 212 U "C5'" C N N 213 U "C4'" C N R 214 U "O4'" O N N 215 U "C3'" C N S 216 U "O3'" O N N 217 U "C2'" C N R 218 U "O2'" O N N 219 U "C1'" C N R 220 U N1 N N N 221 U C2 C N N 222 U O2 O N N 223 U N3 N N N 224 U C4 C N N 225 U O4 O N N 226 U C5 C N N 227 U C6 C N N 228 U HOP3 H N N 229 U HOP2 H N N 230 U "H5'" H N N 231 U "H5''" H N N 232 U "H4'" H N N 233 U "H3'" H N N 234 U "HO3'" H N N 235 U "H2'" H N N 236 U "HO2'" H N N 237 U "H1'" H N N 238 U H3 H N N 239 U H5 H N N 240 U H6 H N N 241 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 J8L N11 C10 trip N N 168 J8L C10 C08 sing N N 169 J8L C12 C13 doub Y N 170 J8L C12 C09 sing Y N 171 J8L C13 C14 sing Y N 172 J8L C08 C09 sing N N 173 J8L C08 C07 doub N Z 174 J8L C09 C16 doub Y N 175 J8L N06 C01 doub Y N 176 J8L N06 C05 sing Y N 177 J8L C01 C02 sing Y N 178 J8L C14 C17 sing N N 179 J8L C14 C15 doub Y N 180 J8L C17 N18 trip N N 181 J8L C05 C07 sing N N 182 J8L C05 C04 doub Y N 183 J8L C02 N19 sing N N 184 J8L C02 N03 doub Y N 185 J8L C25 N19 sing N N 186 J8L C20 N19 sing N N 187 J8L C20 C21 sing N N 188 J8L C16 C15 sing Y N 189 J8L C04 N03 sing Y N 190 J8L C21 N22 sing N N 191 J8L N22 C23 sing N N 192 J8L N22 C24 sing N N 193 J8L C13 H1 sing N N 194 J8L C15 H2 sing N N 195 J8L C20 H3 sing N N 196 J8L C20 H4 sing N N 197 J8L C21 H5 sing N N 198 J8L C21 H6 sing N N 199 J8L C24 H7 sing N N 200 J8L C24 H8 sing N N 201 J8L C24 H9 sing N N 202 J8L C01 H10 sing N N 203 J8L C04 H11 sing N N 204 J8L C07 H12 sing N N 205 J8L C12 H13 sing N N 206 J8L C16 H14 sing N N 207 J8L C23 H15 sing N N 208 J8L C23 H16 sing N N 209 J8L C23 H17 sing N N 210 J8L C25 H18 sing N N 211 J8L C25 H19 sing N N 212 J8L C25 H20 sing N N 213 U OP3 P sing N N 214 U OP3 HOP3 sing N N 215 U P OP1 doub N N 216 U P OP2 sing N N 217 U P "O5'" sing N N 218 U OP2 HOP2 sing N N 219 U "O5'" "C5'" sing N N 220 U "C5'" "C4'" sing N N 221 U "C5'" "H5'" sing N N 222 U "C5'" "H5''" sing N N 223 U "C4'" "O4'" sing N N 224 U "C4'" "C3'" sing N N 225 U "C4'" "H4'" sing N N 226 U "O4'" "C1'" sing N N 227 U "C3'" "O3'" sing N N 228 U "C3'" "C2'" sing N N 229 U "C3'" "H3'" sing N N 230 U "O3'" "HO3'" sing N N 231 U "C2'" "O2'" sing N N 232 U "C2'" "C1'" sing N N 233 U "C2'" "H2'" sing N N 234 U "O2'" "HO2'" sing N N 235 U "C1'" N1 sing N N 236 U "C1'" "H1'" sing N N 237 U N1 C2 sing N N 238 U N1 C6 sing N N 239 U C2 O2 doub N N 240 U C2 N3 sing N N 241 U N3 C4 sing N N 242 U N3 H3 sing N N 243 U C4 O4 doub N N 244 U C4 C5 sing N N 245 U C5 C6 doub N N 246 U C5 H5 sing N N 247 U C6 H6 sing N N 248 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7EOK 'double helix' 7EOK 'a-form double helix' 7EOK 'hairpin loop' 7EOK 'bulge loop' 7EOK 'mismatched base pair' 7EOK 'internal loop' 7EOK 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 47 1_555 0.013 -0.321 0.183 2.713 -14.268 -5.037 1 A_G2:C48_A A 2 ? A 48 ? 19 1 1 A C 2 1_555 A G 46 1_555 0.008 -0.189 0.098 3.998 -14.003 -2.026 2 A_C3:G47_A A 3 ? A 47 ? 19 1 1 A G 3 1_555 A C 45 1_555 0.208 -0.258 0.040 -4.218 -14.287 -4.693 3 A_G4:C46_A A 4 ? A 46 ? 19 1 1 A C 4 1_555 A G 44 1_555 -0.793 -0.053 0.885 -12.416 -2.796 2.911 4 A_C5:G45_A A 5 ? A 45 ? 19 1 1 A C 6 1_555 A G 43 1_555 0.342 -0.165 0.742 -4.339 6.746 9.547 5 A_C7:G44_A A 7 ? A 44 ? 19 1 1 A U 7 1_555 A U 41 1_555 2.556 -1.942 0.752 -9.091 -8.528 7.325 6 A_U8:U42_A A 8 ? A 42 ? 16 1 1 A G 8 1_555 A C 32 1_555 0.100 5.501 0.267 18.965 29.013 127.093 7 A_G9:C33_A A 9 ? A 33 ? 22 6 1 A G 9 1_555 A U 39 1_555 -2.481 -0.576 0.614 20.676 -4.436 0.624 8 A_G10:U40_A A 10 ? A 40 ? 28 1 1 A C 10 1_555 A G 38 1_555 -0.262 -0.313 -0.306 20.282 -27.692 -2.161 9 A_C11:G39_A A 11 ? A 39 ? 19 1 1 A G 11 1_555 A C 37 1_555 -0.195 -0.199 0.117 -5.602 -5.252 2.163 10 A_G12:C38_A A 12 ? A 38 ? 19 1 1 A C 12 1_555 A G 36 1_555 1.137 0.102 0.070 -7.435 -19.538 8.929 11 A_C13:G37_A A 13 ? A 37 ? 19 1 1 A U 13 1_555 A A 35 1_555 1.232 -0.128 1.359 -13.824 -1.844 -9.337 12 A_U14:A36_A A 14 ? A 36 ? 20 1 1 A G 14 1_555 A C 27 1_555 -0.129 -0.201 0.452 1.937 -3.694 0.493 13 A_G15:C28_A A 15 ? A 28 ? 19 1 1 A C 15 1_555 A G 26 1_555 -0.216 -0.287 -0.156 4.981 -7.565 -5.316 14 A_C16:G27_A A 16 ? A 27 ? 19 1 1 A G 16 1_555 A C 25 1_555 -0.140 -0.283 -0.161 -2.138 -8.884 3.565 15 A_G17:C26_A A 17 ? A 26 ? 19 1 1 A C 17 1_555 A G 24 1_555 -0.357 -0.664 0.452 -7.485 0.545 -4.411 16 A_C18:G25_A A 18 ? A 25 ? 19 1 1 A C 18 1_555 A G 23 1_555 0.369 -0.768 0.166 7.201 -5.122 -6.036 17 A_C19:G24_A A 19 ? A 24 ? 19 1 1 A U 31 1_555 A U 34 1_555 3.701 -0.038 -0.343 35.849 12.634 -99.017 18 A_U32:U35_A A 32 ? A 35 ? ? 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 47 1_555 A C 2 1_555 A G 46 1_555 0.696 -1.747 3.177 4.398 8.725 30.976 -4.530 -0.537 2.671 15.849 -7.990 32.444 1 AA_G2C3:G47C48_AA A 2 ? A 48 ? A 3 ? A 47 ? 1 A C 2 1_555 A G 46 1_555 A G 3 1_555 A C 45 1_555 0.020 -1.758 3.365 3.175 11.514 31.691 -4.771 0.448 2.578 20.209 -5.573 33.813 2 AA_C3G4:C46G47_AA A 3 ? A 47 ? A 4 ? A 46 ? 1 A G 3 1_555 A C 45 1_555 A C 4 1_555 A G 44 1_555 0.613 -1.723 3.246 -3.340 10.818 30.187 -4.838 -1.640 2.421 19.912 6.148 32.194 3 AA_G4C5:G45C46_AA A 4 ? A 46 ? A 5 ? A 45 ? 1 A C 4 1_555 A G 44 1_555 A C 6 1_555 A G 43 1_555 -0.949 -1.826 2.792 3.803 2.041 55.076 -2.070 1.211 2.662 2.204 -4.106 55.232 4 AA_C5C7:G44G45_AA A 5 ? A 45 ? A 7 ? A 44 ? 1 A C 6 1_555 A G 43 1_555 A U 7 1_555 A U 41 1_555 2.082 -0.321 3.354 8.299 -6.106 62.160 -0.015 -1.598 3.593 -5.871 -7.979 62.923 5 AA_C7U8:U42G44_AA A 7 ? A 44 ? A 8 ? A 42 ? 1 A U 7 1_555 A U 41 1_555 A G 8 1_555 A C 32 1_555 4.647 -1.401 4.362 -28.812 22.335 -13.938 -4.280 -1.262 5.808 -42.749 -55.145 -38.944 6 AA_U8G9:C33U42_AA A 8 ? A 42 ? A 9 ? A 33 ? 1 A G 9 1_555 A U 39 1_555 A C 10 1_555 A G 38 1_555 0.175 -1.230 3.262 4.967 -0.079 39.954 -1.779 0.309 3.262 -0.115 -7.235 40.249 7 AA_G10C11:G39U40_AA A 10 ? A 40 ? A 11 ? A 39 ? 1 A C 10 1_555 A G 38 1_555 A G 11 1_555 A C 37 1_555 -0.297 -1.831 3.651 -6.888 19.429 34.574 -4.875 -0.348 2.355 29.657 10.514 40.091 8 AA_C11G12:C38G39_AA A 11 ? A 39 ? A 12 ? A 38 ? 1 A G 11 1_555 A C 37 1_555 A C 12 1_555 A G 36 1_555 0.308 -1.342 3.129 4.684 2.968 41.202 -2.190 0.037 3.045 4.195 -6.620 41.557 9 AA_G12C13:G37C38_AA A 12 ? A 38 ? A 13 ? A 37 ? 1 A C 12 1_555 A G 36 1_555 A U 13 1_555 A A 35 1_555 -1.066 -1.369 3.453 -7.375 11.110 31.093 -4.203 0.610 2.974 19.633 13.032 33.767 10 AA_C13U14:A36G37_AA A 13 ? A 37 ? A 14 ? A 36 ? 1 A U 13 1_555 A A 35 1_555 A G 14 1_555 A C 27 1_555 -1.516 -3.721 2.197 6.030 5.604 2.702 -22.746 8.004 -2.776 48.922 -52.638 8.663 11 AA_U14G15:C28A36_AA A 14 ? A 36 ? A 15 ? A 28 ? 1 A G 14 1_555 A C 27 1_555 A C 15 1_555 A G 26 1_555 -0.749 -1.956 3.105 1.931 5.438 33.199 -4.169 1.575 2.713 9.428 -3.349 33.683 12 AA_G15C16:G27C28_AA A 15 ? A 28 ? A 16 ? A 27 ? 1 A C 15 1_555 A G 26 1_555 A G 16 1_555 A C 25 1_555 0.294 -1.704 3.385 -1.533 5.773 31.693 -4.084 -0.798 3.018 10.455 2.777 32.236 13 AA_C16G17:C26G27_AA A 16 ? A 27 ? A 17 ? A 26 ? 1 A G 16 1_555 A C 25 1_555 A C 17 1_555 A G 24 1_555 -0.186 -2.215 3.395 -5.956 1.517 26.868 -5.031 -1.105 3.233 3.212 12.609 27.549 14 AA_G17C18:G25C26_AA A 17 ? A 26 ? A 18 ? A 25 ? 1 A C 17 1_555 A G 24 1_555 A C 18 1_555 A G 23 1_555 0.512 -1.810 2.802 4.513 1.104 34.860 -3.137 -0.270 2.787 1.832 -7.492 35.158 15 AA_C18C19:G24G25_AA A 18 ? A 25 ? A 19 ? A 24 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 J8L ? ? J8L ? ? 'SUBJECT OF INVESTIGATION' ? 2 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 '4-[(~{Z})-1-cyano-2-[5-[2-(dimethylamino)ethyl-methyl-amino]pyrazin-2-yl]ethenyl]benzenecarbonitrile' J8L 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7EOG _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #