HEADER OXIDOREDUCTASE 27-APR-21 7EPM TITLE HUMAN LDHC COMPLEXED WITH NAD+ AND ETHYLAMINO ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE C CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LDH-C,CANCER/TESTIS ANTIGEN 32,CT32,LDH TESTIS SUBUNIT,LDH- COMPND 5 X; COMPND 6 EC: 1.1.1.27; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LDHC, LDH3, LDHX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YU,Q.CHEN REVDAT 3 29-NOV-23 7EPM 1 REMARK REVDAT 2 15-JUN-22 7EPM 1 JRNL REVDAT 1 02-MAR-22 7EPM 0 JRNL AUTH H.TAN,H.WANG,J.MA,H.DENG,Q.HE,Q.CHEN,Q.ZHANG JRNL TITL IDENTIFICATION OF HUMAN LDHC4 AS A POTENTIAL TARGET FOR JRNL TITL 2 ANTICANCER DRUG DISCOVERY. JRNL REF ACTA PHARM SIN B V. 12 2348 2022 JRNL REFN ISSN 2211-3835 JRNL PMID 35646544 JRNL DOI 10.1016/J.APSB.2021.12.002 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 33637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4700 - 6.4500 0.95 3331 151 0.1698 0.1837 REMARK 3 2 6.4500 - 5.1200 1.00 3317 144 0.1977 0.2198 REMARK 3 3 5.1200 - 4.4800 1.00 3272 149 0.1616 0.1893 REMARK 3 4 4.4800 - 4.0700 1.00 3270 117 0.1670 0.1979 REMARK 3 5 4.0700 - 3.7800 1.00 3222 149 0.1962 0.2207 REMARK 3 6 3.7800 - 3.5500 1.00 3230 131 0.2164 0.2710 REMARK 3 7 3.5500 - 3.3800 1.00 3241 118 0.2464 0.2469 REMARK 3 8 3.3800 - 3.2300 1.00 3225 125 0.2665 0.2979 REMARK 3 9 3.2300 - 3.1100 0.99 3175 147 0.2989 0.3061 REMARK 3 10 3.1100 - 3.0000 0.94 2996 127 0.3174 0.3503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5303 REMARK 3 ANGLE : 1.188 7195 REMARK 3 CHIRALITY : 0.076 852 REMARK 3 PLANARITY : 0.006 877 REMARK 3 DIHEDRAL : 9.853 3132 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300021967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.998 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1I10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CHLORIDE, 0.1 M HEPES PH REMARK 280 7.5, 1.6 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.73667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.47333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.60500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 149.34167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.86833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.73667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 119.47333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 149.34167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 89.60500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 29.86833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -363.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -29.86833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 104 REMARK 465 GLU B 105 REMARK 465 THR B 106 REMARK 465 GLN B 332 REMARK 465 PHE B 333 REMARK 465 LEU B 334 REMARK 465 GLU B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 20 OE1 GLU B 48 1.41 REMARK 500 HG SER A 20 OE1 GLU A 48 1.58 REMARK 500 OG SER B 311 O1 SO4 B 407 1.93 REMARK 500 OG SER B 20 OE1 GLU B 48 2.08 REMARK 500 O GLN B 234 OG SER B 238 2.14 REMARK 500 OD1 ASP B 16 O HOH B 501 2.16 REMARK 500 O ASN A 326 N ASP A 330 2.17 REMARK 500 OD2 ASP A 47 O HOH A 501 2.19 REMARK 500 OD1 ASP A 142 OG SER A 275 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 17 HD21 ASN B 299 10554 1.48 REMARK 500 OE1 GLU B 62 NZ LYS B 246 10554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 107 CB ARG A 107 CG -0.173 REMARK 500 ARG A 107 CG ARG A 107 CD -0.170 REMARK 500 ASP A 330 CB ASP A 330 CG 0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 CG - CD - NE ANGL. DEV. = -28.0 DEGREES REMARK 500 ARG A 107 CD - NE - CZ ANGL. DEV. = -20.6 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ASP A 330 OD1 - CG - OD2 ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 330 CB - CG - OD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU A 331 CA - CB - CG ANGL. DEV. = -21.1 DEGREES REMARK 500 ARG B 91 CG - CD - NE ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 91 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 29 41.47 -103.72 REMARK 500 SER A 250 -40.62 -133.72 REMARK 500 CYS B 22 53.05 -142.27 REMARK 500 THR B 29 56.21 -96.24 REMARK 500 ASP B 216 84.09 -153.65 REMARK 500 TYR B 282 44.15 38.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 330 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7EPM A 3 333 UNP P07864 LDHC_HUMAN 2 332 DBREF 7EPM B 3 333 UNP P07864 LDHC_HUMAN 2 332 SEQADV 7EPM MET A 1 UNP P07864 INITIATING METHIONINE SEQADV 7EPM ALA A 2 UNP P07864 EXPRESSION TAG SEQADV 7EPM GLU A 56 UNP P07864 LEU 55 ENGINEERED MUTATION SEQADV 7EPM GLN A 332 UNP P07864 ILE 331 ENGINEERED MUTATION SEQADV 7EPM LEU A 334 UNP P07864 EXPRESSION TAG SEQADV 7EPM GLU A 335 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 336 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 337 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 338 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 339 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 340 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS A 341 UNP P07864 EXPRESSION TAG SEQADV 7EPM MET B 1 UNP P07864 INITIATING METHIONINE SEQADV 7EPM ALA B 2 UNP P07864 EXPRESSION TAG SEQADV 7EPM GLU B 56 UNP P07864 LEU 55 ENGINEERED MUTATION SEQADV 7EPM GLN B 332 UNP P07864 ILE 331 ENGINEERED MUTATION SEQADV 7EPM LEU B 334 UNP P07864 EXPRESSION TAG SEQADV 7EPM GLU B 335 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 336 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 337 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 338 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 339 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 340 UNP P07864 EXPRESSION TAG SEQADV 7EPM HIS B 341 UNP P07864 EXPRESSION TAG SEQRES 1 A 341 MET ALA SER THR VAL LYS GLU GLN LEU ILE GLU LYS LEU SEQRES 2 A 341 ILE GLU ASP ASP GLU ASN SER GLN CYS LYS ILE THR ILE SEQRES 3 A 341 VAL GLY THR GLY ALA VAL GLY MET ALA CYS ALA ILE SER SEQRES 4 A 341 ILE LEU LEU LYS ASP LEU ALA ASP GLU LEU ALA LEU VAL SEQRES 5 A 341 ASP VAL ALA GLU ASP LYS LEU LYS GLY GLU MET MET ASP SEQRES 6 A 341 LEU GLN HIS GLY SER LEU PHE PHE SER THR SER LYS ILE SEQRES 7 A 341 THR SER GLY LYS ASP TYR SER VAL SER ALA ASN SER ARG SEQRES 8 A 341 ILE VAL ILE VAL THR ALA GLY ALA ARG GLN GLN GLU GLY SEQRES 9 A 341 GLU THR ARG LEU ALA LEU VAL GLN ARG ASN VAL ALA ILE SEQRES 10 A 341 MET LYS SER ILE ILE PRO ALA ILE VAL HIS TYR SER PRO SEQRES 11 A 341 ASP CYS LYS ILE LEU VAL VAL SER ASN PRO VAL ASP ILE SEQRES 12 A 341 LEU THR TYR ILE VAL TRP LYS ILE SER GLY LEU PRO VAL SEQRES 13 A 341 THR ARG VAL ILE GLY SER GLY CYS ASN LEU ASP SER ALA SEQRES 14 A 341 ARG PHE ARG TYR LEU ILE GLY GLU LYS LEU GLY VAL HIS SEQRES 15 A 341 PRO THR SER CYS HIS GLY TRP ILE ILE GLY GLU HIS GLY SEQRES 16 A 341 ASP SER SER VAL PRO LEU TRP SER GLY VAL ASN VAL ALA SEQRES 17 A 341 GLY VAL ALA LEU LYS THR LEU ASP PRO LYS LEU GLY THR SEQRES 18 A 341 ASP SER ASP LYS GLU HIS TRP LYS ASN ILE HIS LYS GLN SEQRES 19 A 341 VAL ILE GLN SER ALA TYR GLU ILE ILE LYS LEU LYS GLY SEQRES 20 A 341 TYR THR SER TRP ALA ILE GLY LEU SER VAL MET ASP LEU SEQRES 21 A 341 VAL GLY SER ILE LEU LYS ASN LEU ARG ARG VAL HIS PRO SEQRES 22 A 341 VAL SER THR MET VAL LYS GLY LEU TYR GLY ILE LYS GLU SEQRES 23 A 341 GLU LEU PHE LEU SER ILE PRO CYS VAL LEU GLY ARG ASN SEQRES 24 A 341 GLY VAL SER ASP VAL VAL LYS ILE ASN LEU ASN SER GLU SEQRES 25 A 341 GLU GLU ALA LEU PHE LYS LYS SER ALA GLU THR LEU TRP SEQRES 26 A 341 ASN ILE GLN LYS ASP LEU GLN PHE LEU GLU HIS HIS HIS SEQRES 27 A 341 HIS HIS HIS SEQRES 1 B 341 MET ALA SER THR VAL LYS GLU GLN LEU ILE GLU LYS LEU SEQRES 2 B 341 ILE GLU ASP ASP GLU ASN SER GLN CYS LYS ILE THR ILE SEQRES 3 B 341 VAL GLY THR GLY ALA VAL GLY MET ALA CYS ALA ILE SER SEQRES 4 B 341 ILE LEU LEU LYS ASP LEU ALA ASP GLU LEU ALA LEU VAL SEQRES 5 B 341 ASP VAL ALA GLU ASP LYS LEU LYS GLY GLU MET MET ASP SEQRES 6 B 341 LEU GLN HIS GLY SER LEU PHE PHE SER THR SER LYS ILE SEQRES 7 B 341 THR SER GLY LYS ASP TYR SER VAL SER ALA ASN SER ARG SEQRES 8 B 341 ILE VAL ILE VAL THR ALA GLY ALA ARG GLN GLN GLU GLY SEQRES 9 B 341 GLU THR ARG LEU ALA LEU VAL GLN ARG ASN VAL ALA ILE SEQRES 10 B 341 MET LYS SER ILE ILE PRO ALA ILE VAL HIS TYR SER PRO SEQRES 11 B 341 ASP CYS LYS ILE LEU VAL VAL SER ASN PRO VAL ASP ILE SEQRES 12 B 341 LEU THR TYR ILE VAL TRP LYS ILE SER GLY LEU PRO VAL SEQRES 13 B 341 THR ARG VAL ILE GLY SER GLY CYS ASN LEU ASP SER ALA SEQRES 14 B 341 ARG PHE ARG TYR LEU ILE GLY GLU LYS LEU GLY VAL HIS SEQRES 15 B 341 PRO THR SER CYS HIS GLY TRP ILE ILE GLY GLU HIS GLY SEQRES 16 B 341 ASP SER SER VAL PRO LEU TRP SER GLY VAL ASN VAL ALA SEQRES 17 B 341 GLY VAL ALA LEU LYS THR LEU ASP PRO LYS LEU GLY THR SEQRES 18 B 341 ASP SER ASP LYS GLU HIS TRP LYS ASN ILE HIS LYS GLN SEQRES 19 B 341 VAL ILE GLN SER ALA TYR GLU ILE ILE LYS LEU LYS GLY SEQRES 20 B 341 TYR THR SER TRP ALA ILE GLY LEU SER VAL MET ASP LEU SEQRES 21 B 341 VAL GLY SER ILE LEU LYS ASN LEU ARG ARG VAL HIS PRO SEQRES 22 B 341 VAL SER THR MET VAL LYS GLY LEU TYR GLY ILE LYS GLU SEQRES 23 B 341 GLU LEU PHE LEU SER ILE PRO CYS VAL LEU GLY ARG ASN SEQRES 24 B 341 GLY VAL SER ASP VAL VAL LYS ILE ASN LEU ASN SER GLU SEQRES 25 B 341 GLU GLU ALA LEU PHE LYS LYS SER ALA GLU THR LEU TRP SEQRES 26 B 341 ASN ILE GLN LYS ASP LEU GLN PHE LEU GLU HIS HIS HIS SEQRES 27 B 341 HIS HIS HIS HET J9X A 401 14 HET NAD A 402 70 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET J9X B 401 14 HET NAD B 402 70 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET SO4 B 408 5 HETNAM J9X 2-(ETHYLAMINO)-2-OXIDANYLIDENE-ETHANOIC ACID HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 3 J9X 2(C4 H7 N O3) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 SO4 9(O4 S 2-) FORMUL 16 HOH *27(H2 O) HELIX 1 AA1 THR A 4 ILE A 10 1 7 HELIX 2 AA2 GLY A 30 LYS A 43 1 14 HELIX 3 AA3 ALA A 55 HIS A 68 1 14 HELIX 4 AA4 GLY A 69 PHE A 73 5 5 HELIX 5 AA5 ASP A 83 ALA A 88 5 6 HELIX 6 AA6 ARG A 107 SER A 129 1 23 HELIX 7 AA7 PRO A 140 GLY A 153 1 14 HELIX 8 AA8 PRO A 155 THR A 157 5 3 HELIX 9 AA9 CYS A 164 GLY A 180 1 17 HELIX 10 AB1 LEU A 212 ASP A 216 1 5 HELIX 11 AB2 TRP A 228 GLY A 247 1 20 HELIX 12 AB3 SER A 250 LYS A 266 1 17 HELIX 13 AB4 ASN A 310 PHE A 333 1 24 HELIX 14 AB5 THR B 4 ILE B 10 1 7 HELIX 15 AB6 GLY B 30 LYS B 43 1 14 HELIX 16 AB7 ALA B 55 GLY B 69 1 15 HELIX 17 AB8 SER B 70 PHE B 73 5 4 HELIX 18 AB9 ASP B 83 ALA B 88 5 6 HELIX 19 AC1 LEU B 108 SER B 129 1 22 HELIX 20 AC2 PRO B 140 GLY B 153 1 14 HELIX 21 AC3 PRO B 155 THR B 157 5 3 HELIX 22 AC4 CYS B 164 GLY B 180 1 17 HELIX 23 AC5 HIS B 182 THR B 184 5 3 HELIX 24 AC6 LEU B 212 ASP B 216 1 5 HELIX 25 AC7 TRP B 228 LYS B 246 1 19 HELIX 26 AC8 SER B 250 LYS B 266 1 17 HELIX 27 AC9 ASN B 310 LYS B 329 1 20 SHEET 1 AA1 6 LYS A 77 SER A 80 0 SHEET 2 AA1 6 GLU A 48 VAL A 52 1 N LEU A 49 O THR A 79 SHEET 3 AA1 6 LYS A 23 VAL A 27 1 N ILE A 24 O ALA A 50 SHEET 4 AA1 6 ILE A 92 VAL A 95 1 O ILE A 94 N VAL A 27 SHEET 5 AA1 6 LYS A 133 VAL A 136 1 O LEU A 135 N VAL A 93 SHEET 6 AA1 6 VAL A 159 GLY A 161 1 O ILE A 160 N VAL A 136 SHEET 1 AA2 3 CYS A 186 HIS A 187 0 SHEET 2 AA2 3 ASN A 206 VAL A 207 -1 O ASN A 206 N HIS A 187 SHEET 3 AA2 3 VAL A 210 ALA A 211 -1 O VAL A 210 N VAL A 207 SHEET 1 AA3 2 ILE A 190 ILE A 191 0 SHEET 2 AA3 2 VAL A 199 PRO A 200 -1 O VAL A 199 N ILE A 191 SHEET 1 AA4 3 ARG A 270 MET A 277 0 SHEET 2 AA4 3 PHE A 289 GLY A 297 -1 O CYS A 294 N HIS A 272 SHEET 3 AA4 3 GLY A 300 VAL A 304 -1 O GLY A 300 N GLY A 297 SHEET 1 AA5 6 LYS B 77 SER B 80 0 SHEET 2 AA5 6 GLU B 48 VAL B 52 1 N LEU B 51 O THR B 79 SHEET 3 AA5 6 LYS B 23 VAL B 27 1 N ILE B 24 O ALA B 50 SHEET 4 AA5 6 ILE B 92 VAL B 95 1 O ILE B 94 N THR B 25 SHEET 5 AA5 6 LYS B 133 VAL B 136 1 O LEU B 135 N VAL B 95 SHEET 6 AA5 6 VAL B 159 GLY B 161 1 O ILE B 160 N VAL B 136 SHEET 1 AA6 3 CYS B 186 HIS B 187 0 SHEET 2 AA6 3 ASN B 206 VAL B 207 -1 O ASN B 206 N HIS B 187 SHEET 3 AA6 3 VAL B 210 ALA B 211 -1 O VAL B 210 N VAL B 207 SHEET 1 AA7 2 ILE B 190 GLY B 192 0 SHEET 2 AA7 2 SER B 198 PRO B 200 -1 O VAL B 199 N ILE B 191 SHEET 1 AA8 3 ARG B 270 MET B 277 0 SHEET 2 AA8 3 PHE B 289 GLY B 297 -1 O CYS B 294 N HIS B 272 SHEET 3 AA8 3 GLY B 300 VAL B 304 -1 O ASP B 303 N VAL B 295 CISPEP 1 ASN A 139 PRO A 140 0 0.12 CISPEP 2 ASN B 139 PRO B 140 0 -1.52 CRYST1 177.891 177.891 179.210 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005621 0.003246 0.000000 0.00000 SCALE2 0.000000 0.006491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005580 0.00000