HEADER VIRUS LIKE PARTICLE 27-APR-21 7EPP TITLE RECOMBINANT ALFALFA MOSAIC VIRUS COAT PROTEIN VIRUS-LIKE PARTICLE TITLE 2 (RAMV-CP VLP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: a; COMPND 4 SYNONYM: CP,COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALFALFA MOSAIC VIRUS (STRAIN 425 / ISOLATE SOURCE 3 MADISON); SOURCE 4 ORGANISM_TAXID: 12323; SOURCE 5 GENE: ORF3B; SOURCE 6 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS ALFALFA MOSAIC VIRUS, VIRUS-LIKE PARTICLE, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR H.JEONG,S.LEE REVDAT 2 05-JUN-24 7EPP 1 REMARK REVDAT 1 17-NOV-21 7EPP 0 JRNL AUTH H.JEONG,Y.PARK,S.SONG,K.MIN,J.S.WOO,Y.H.LEE,E.J.SOHN,S.LEE JRNL TITL CHARACTERIZATION OF ALFALFA MOSAIC VIRUS CAPSID PROTEIN JRNL TITL 2 USING CRYO-EM. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 559 161 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 33940388 JRNL DOI 10.1016/J.BBRC.2021.04.060 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 279755 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7EPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300021937. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ALFALFA MOSAIC VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT2 2 -0.309017 0.809017 -0.500000 221.44000 REMARK 350 BIOMT3 2 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT1 3 -0.309017 -0.809017 -0.500000 579.73746 REMARK 350 BIOMT2 3 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT3 3 0.500000 0.309017 -0.809017 221.44000 REMARK 350 BIOMT1 4 -0.309017 -0.809017 0.500000 358.29745 REMARK 350 BIOMT2 4 -0.809017 0.500000 0.309017 221.44001 REMARK 350 BIOMT3 4 -0.500000 -0.309017 -0.809017 579.73745 REMARK 350 BIOMT1 5 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 5 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 5 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT1 6 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT2 6 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT3 6 -0.500000 0.309017 -0.809017 442.88000 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT2 7 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 7 -1.000000 0.000000 0.000000 442.88000 REMARK 350 BIOMT1 8 0.309017 -0.809017 0.500000 221.44001 REMARK 350 BIOMT2 8 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT3 8 -0.500000 0.309017 0.809017 84.58255 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 84.58256 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 221.44000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT1 10 0.809017 -0.500000 -0.309017 221.44001 REMARK 350 BIOMT2 10 -0.500000 -0.309017 -0.809017 579.73746 REMARK 350 BIOMT3 10 0.309017 0.809017 -0.500000 84.58255 REMARK 350 BIOMT1 11 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT2 11 0.500000 0.309017 -0.809017 221.44001 REMARK 350 BIOMT3 11 -0.309017 -0.809017 -0.500000 579.73745 REMARK 350 BIOMT1 12 -0.809017 0.500000 0.309017 221.44001 REMARK 350 BIOMT2 12 -0.500000 -0.309017 -0.809017 579.73746 REMARK 350 BIOMT3 12 -0.309017 -0.809017 0.500000 358.29745 REMARK 350 BIOMT1 13 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 13 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT3 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 14 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 -0.309017 0.809017 -0.500000 221.44000 REMARK 350 BIOMT2 15 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT3 15 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT1 16 -0.500000 0.309017 0.809017 84.58256 REMARK 350 BIOMT2 16 0.309017 -0.809017 0.500000 221.44001 REMARK 350 BIOMT3 16 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT1 17 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT2 17 0.809017 -0.500000 0.309017 84.58256 REMARK 350 BIOMT3 17 0.500000 0.309017 -0.809017 221.44000 REMARK 350 BIOMT1 18 0.309017 0.809017 -0.500000 84.58255 REMARK 350 BIOMT2 18 0.809017 -0.500000 -0.309017 221.44001 REMARK 350 BIOMT3 18 -0.500000 -0.309017 -0.809017 579.73745 REMARK 350 BIOMT1 19 -0.500000 0.309017 -0.809017 442.88001 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT3 19 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 442.88001 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 442.88001 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 0.309017 -0.809017 0.500000 221.44001 REMARK 350 BIOMT2 22 -0.809017 -0.500000 -0.309017 579.73746 REMARK 350 BIOMT3 22 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT1 23 0.809017 -0.500000 0.309017 84.58256 REMARK 350 BIOMT2 23 -0.500000 -0.309017 0.809017 221.44001 REMARK 350 BIOMT3 23 -0.309017 -0.809017 -0.500000 579.73746 REMARK 350 BIOMT1 24 0.809017 -0.500000 -0.309017 221.44000 REMARK 350 BIOMT2 24 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT3 24 -0.309017 -0.809017 0.500000 358.29745 REMARK 350 BIOMT1 25 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT2 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 25 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 26 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 26 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 26 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT1 27 0.000000 0.000000 -1.000000 442.88001 REMARK 350 BIOMT2 27 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 27 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT1 28 -0.809017 -0.500000 -0.309017 579.73746 REMARK 350 BIOMT2 28 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT3 28 0.309017 -0.809017 0.500000 221.44000 REMARK 350 BIOMT1 29 -0.500000 -0.309017 0.809017 221.44001 REMARK 350 BIOMT2 29 -0.309017 -0.809017 -0.500000 579.73746 REMARK 350 BIOMT3 29 0.809017 -0.500000 0.309017 84.58255 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 358.29746 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 221.44000 REMARK 350 BIOMT1 31 -0.500000 -0.309017 0.809017 221.44000 REMARK 350 BIOMT2 31 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT3 31 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT1 32 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT2 32 0.309017 0.809017 -0.500000 84.58255 REMARK 350 BIOMT3 32 -0.809017 0.500000 0.309017 221.44000 REMARK 350 BIOMT1 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 33 -0.500000 0.309017 -0.809017 442.88001 REMARK 350 BIOMT3 33 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 34 0.000000 0.000000 -1.000000 442.88001 REMARK 350 BIOMT2 34 -1.000000 0.000000 0.000000 442.88001 REMARK 350 BIOMT3 34 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 35 -0.809017 -0.500000 -0.309017 579.73746 REMARK 350 BIOMT2 35 -0.500000 0.309017 0.809017 84.58256 REMARK 350 BIOMT3 35 -0.309017 0.809017 -0.500000 221.44000 REMARK 350 BIOMT1 36 -0.309017 0.809017 -0.500000 221.44000 REMARK 350 BIOMT2 36 -0.809017 -0.500000 -0.309017 579.73746 REMARK 350 BIOMT3 36 -0.500000 0.309017 0.809017 84.58255 REMARK 350 BIOMT1 37 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT2 37 -0.500000 -0.309017 0.809017 221.44001 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT1 38 -0.809017 0.500000 0.309017 221.44000 REMARK 350 BIOMT2 38 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT3 38 0.309017 0.809017 -0.500000 84.58255 REMARK 350 BIOMT1 39 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 -0.500000 0.309017 -0.809017 442.88000 REMARK 350 BIOMT1 40 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 40 0.000000 0.000000 -1.000000 442.88001 REMARK 350 BIOMT3 40 -1.000000 0.000000 0.000000 442.88001 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 442.88001 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 84.58256 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 221.44000 REMARK 350 BIOMT1 43 0.500000 0.309017 -0.809017 221.44000 REMARK 350 BIOMT2 43 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT3 43 0.809017 -0.500000 0.309017 84.58255 REMARK 350 BIOMT1 44 -0.500000 -0.309017 -0.809017 579.73746 REMARK 350 BIOMT2 44 0.309017 0.809017 -0.500000 84.58256 REMARK 350 BIOMT3 44 0.809017 -0.500000 -0.309017 221.44000 REMARK 350 BIOMT1 45 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT2 45 -0.500000 0.309017 -0.809017 442.88001 REMARK 350 BIOMT3 45 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT1 46 -0.500000 0.309017 -0.809017 442.88001 REMARK 350 BIOMT2 46 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 46 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 -1.000000 0.000000 0.000000 442.88001 REMARK 350 BIOMT2 47 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 442.88000 REMARK 350 BIOMT1 48 -0.500000 0.309017 0.809017 84.58256 REMARK 350 BIOMT2 48 -0.309017 0.809017 -0.500000 221.44001 REMARK 350 BIOMT3 48 -0.809017 -0.500000 -0.309017 579.73746 REMARK 350 BIOMT1 49 0.309017 0.809017 0.500000 -136.85745 REMARK 350 BIOMT2 49 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT3 49 -0.500000 -0.309017 0.809017 221.44000 REMARK 350 BIOMT1 50 0.309017 0.809017 -0.500000 84.58255 REMARK 350 BIOMT2 50 -0.809017 0.500000 0.309017 221.44000 REMARK 350 BIOMT3 50 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT1 51 -0.309017 -0.809017 -0.500000 579.73746 REMARK 350 BIOMT2 51 0.809017 -0.500000 0.309017 84.58256 REMARK 350 BIOMT3 51 -0.500000 -0.309017 0.809017 221.44000 REMARK 350 BIOMT1 52 -0.309017 -0.809017 0.500000 358.29746 REMARK 350 BIOMT2 52 0.809017 -0.500000 -0.309017 221.44001 REMARK 350 BIOMT3 52 0.500000 0.309017 0.809017 -136.85745 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 442.88001 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 442.88001 REMARK 350 BIOMT3 54 0.000000 0.000000 -1.000000 442.88000 REMARK 350 BIOMT1 55 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT2 55 0.309017 -0.809017 0.500000 221.44001 REMARK 350 BIOMT3 55 -0.809017 -0.500000 -0.309017 579.73745 REMARK 350 BIOMT1 56 0.809017 0.500000 0.309017 -136.85745 REMARK 350 BIOMT2 56 0.500000 -0.309017 -0.809017 358.29745 REMARK 350 BIOMT3 56 -0.309017 0.809017 -0.500000 221.44000 REMARK 350 BIOMT1 57 0.500000 0.309017 -0.809017 221.44000 REMARK 350 BIOMT2 57 -0.309017 -0.809017 -0.500000 579.73746 REMARK 350 BIOMT3 57 -0.809017 0.500000 -0.309017 358.29745 REMARK 350 BIOMT1 58 -0.500000 -0.309017 -0.809017 579.73746 REMARK 350 BIOMT2 58 -0.309017 -0.809017 0.500000 358.29746 REMARK 350 BIOMT3 58 -0.809017 0.500000 0.309017 221.44000 REMARK 350 BIOMT1 59 -0.809017 -0.500000 0.309017 442.88001 REMARK 350 BIOMT2 59 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 59 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 60 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 60 0.000000 1.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS a 1 REMARK 465 MET a 2 REMARK 465 GLN a 3 REMARK 465 VAL a 4 REMARK 465 TRP a 5 REMARK 465 PRO a 6 REMARK 465 PRO a 7 REMARK 465 ILE a 8 REMARK 465 GLY a 9 REMARK 465 LYS a 10 REMARK 465 LYS a 11 REMARK 465 LYS a 12 REMARK 465 PHE a 13 REMARK 465 GLU a 14 REMARK 465 THR a 15 REMARK 465 LEU a 16 REMARK 465 SER a 17 REMARK 465 TYR a 18 REMARK 465 LEU a 19 REMARK 465 PRO a 20 REMARK 465 ASP a 21 REMARK 465 LEU a 22 REMARK 465 THR a 23 REMARK 465 GLY a 24 REMARK 465 SER a 25 REMARK 465 MET a 26 REMARK 465 SER a 27 REMARK 465 SER a 28 REMARK 465 SER a 29 REMARK 465 GLN a 30 REMARK 465 LYS a 31 REMARK 465 LYS a 32 REMARK 465 ALA a 33 REMARK 465 GLY a 34 REMARK 465 GLY a 35 REMARK 465 LYS a 36 REMARK 465 ALA a 37 REMARK 465 GLY a 38 REMARK 465 LYS a 39 REMARK 465 PRO a 40 REMARK 465 THR a 41 REMARK 465 LYS a 42 REMARK 465 ARG a 43 REMARK 465 SER a 44 REMARK 465 GLN a 45 REMARK 465 ASN a 46 REMARK 465 TYR a 47 REMARK 465 ALA a 48 REMARK 465 ALA a 49 REMARK 465 LEU a 50 REMARK 465 ARG a 51 REMARK 465 LYS a 52 REMARK 465 ALA a 53 REMARK 465 GLN a 54 REMARK 465 LEU a 55 REMARK 465 PRO a 56 REMARK 465 LYS a 57 REMARK 465 PRO a 58 REMARK 465 PRO a 59 REMARK 465 ALA a 60 REMARK 465 LEU a 61 REMARK 465 LYS a 62 REMARK 465 VAL a 63 REMARK 465 PRO a 64 REMARK 465 VAL a 65 REMARK 465 VAL a 66 REMARK 465 LYS a 67 REMARK 465 PRO a 68 REMARK 465 THR a 69 REMARK 465 LEU a 237 REMARK 465 ASP a 238 REMARK 465 GLU a 239 REMARK 465 ALA a 240 REMARK 465 ASP a 241 REMARK 465 ASP a 242 REMARK 465 LEU a 243 REMARK 465 ASP a 244 REMARK 465 ARG a 245 REMARK 465 HIS a 246 REMARK 465 PRO a 247 REMARK 465 ARG a 248 REMARK 465 GLY a 249 REMARK 465 HIS a 250 REMARK 465 HIS a 251 REMARK 465 HIS a 252 REMARK 465 HIS a 253 REMARK 465 HIS a 254 REMARK 465 HIS a 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH a 321 O HOH a 323 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN a 75 -169.69 -76.18 REMARK 500 PHE a 92 70.59 59.61 REMARK 500 ASN a 93 39.08 75.28 REMARK 500 SER a 124 114.83 -161.62 REMARK 500 ASP a 143 117.61 -160.53 REMARK 500 PHE a 186 2.87 -68.15 REMARK 500 SER a 189 -3.76 76.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY a 109 PRO a 110 137.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-31248 RELATED DB: EMDB REMARK 900 RECOMBINANT ALFALFA MOSAIC VIRUS COAT PROTEIN VIRUS-LIKE PARTICLE REMARK 900 (RAMV-CP VLP) DBREF 7EPP a 26 246 UNP P05673 CAPSD_AMVMA 1 221 SEQADV 7EPP CYS a 1 UNP P05673 EXPRESSION TAG SEQADV 7EPP MET a 2 UNP P05673 EXPRESSION TAG SEQADV 7EPP GLN a 3 UNP P05673 EXPRESSION TAG SEQADV 7EPP VAL a 4 UNP P05673 EXPRESSION TAG SEQADV 7EPP TRP a 5 UNP P05673 EXPRESSION TAG SEQADV 7EPP PRO a 6 UNP P05673 EXPRESSION TAG SEQADV 7EPP PRO a 7 UNP P05673 EXPRESSION TAG SEQADV 7EPP ILE a 8 UNP P05673 EXPRESSION TAG SEQADV 7EPP GLY a 9 UNP P05673 EXPRESSION TAG SEQADV 7EPP LYS a 10 UNP P05673 EXPRESSION TAG SEQADV 7EPP LYS a 11 UNP P05673 EXPRESSION TAG SEQADV 7EPP LYS a 12 UNP P05673 EXPRESSION TAG SEQADV 7EPP PHE a 13 UNP P05673 EXPRESSION TAG SEQADV 7EPP GLU a 14 UNP P05673 EXPRESSION TAG SEQADV 7EPP THR a 15 UNP P05673 EXPRESSION TAG SEQADV 7EPP LEU a 16 UNP P05673 EXPRESSION TAG SEQADV 7EPP SER a 17 UNP P05673 EXPRESSION TAG SEQADV 7EPP TYR a 18 UNP P05673 EXPRESSION TAG SEQADV 7EPP LEU a 19 UNP P05673 EXPRESSION TAG SEQADV 7EPP PRO a 20 UNP P05673 EXPRESSION TAG SEQADV 7EPP ASP a 21 UNP P05673 EXPRESSION TAG SEQADV 7EPP LEU a 22 UNP P05673 EXPRESSION TAG SEQADV 7EPP THR a 23 UNP P05673 EXPRESSION TAG SEQADV 7EPP GLY a 24 UNP P05673 EXPRESSION TAG SEQADV 7EPP SER a 25 UNP P05673 EXPRESSION TAG SEQADV 7EPP PRO a 247 UNP P05673 EXPRESSION TAG SEQADV 7EPP ARG a 248 UNP P05673 EXPRESSION TAG SEQADV 7EPP GLY a 249 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 250 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 251 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 252 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 253 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 254 UNP P05673 EXPRESSION TAG SEQADV 7EPP HIS a 255 UNP P05673 EXPRESSION TAG SEQRES 1 a 255 CYS MET GLN VAL TRP PRO PRO ILE GLY LYS LYS LYS PHE SEQRES 2 a 255 GLU THR LEU SER TYR LEU PRO ASP LEU THR GLY SER MET SEQRES 3 a 255 SER SER SER GLN LYS LYS ALA GLY GLY LYS ALA GLY LYS SEQRES 4 a 255 PRO THR LYS ARG SER GLN ASN TYR ALA ALA LEU ARG LYS SEQRES 5 a 255 ALA GLN LEU PRO LYS PRO PRO ALA LEU LYS VAL PRO VAL SEQRES 6 a 255 VAL LYS PRO THR ASN THR ILE LEU PRO GLN THR GLY CYS SEQRES 7 a 255 VAL TRP GLN SER LEU GLY THR PRO LEU SER LEU SER SER SEQRES 8 a 255 PHE ASN GLY LEU GLY VAL ARG PHE LEU TYR SER PHE LEU SEQRES 9 a 255 LYS ASP PHE ALA GLY PRO ARG ILE LEU GLU GLU ASP LEU SEQRES 10 a 255 ILE TYR ARG MET VAL PHE SER ILE THR PRO SER TYR ALA SEQRES 11 a 255 GLY THR PHE CYS LEU THR ASP ASP VAL THR THR GLU ASP SEQRES 12 a 255 GLY ARG ALA VAL ALA HIS GLY ASN PRO MET GLN GLU PHE SEQRES 13 a 255 PRO HIS GLY ALA PHE HIS ALA ASN GLU LYS PHE GLY PHE SEQRES 14 a 255 GLU LEU VAL PHE THR ALA PRO THR HIS ALA GLY MET GLN SEQRES 15 a 255 ASN GLN ASN PHE LYS HIS SER TYR ALA VAL ALA LEU CYS SEQRES 16 a 255 LEU ASP PHE ASP ALA GLN PRO GLU GLY SER LYS ASN PRO SEQRES 17 a 255 SER TYR ARG PHE ASN GLU VAL TRP VAL GLU ARG LYS ALA SEQRES 18 a 255 PHE PRO ARG ALA GLY PRO LEU ARG SER LEU ILE THR VAL SEQRES 19 a 255 GLY LEU LEU ASP GLU ALA ASP ASP LEU ASP ARG HIS PRO SEQRES 20 a 255 ARG GLY HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *30(H2 O) HELIX 1 AA1 LEU a 100 LYS a 105 1 6 HELIX 2 AA2 GLN a 184 HIS a 188 5 5 HELIX 3 AA3 LEU a 228 ILE a 232 5 5 SHEET 1 AA1 3 CYS a 78 SER a 82 0 SHEET 2 AA1 3 TYR a 210 LYS a 220 -1 O ARG a 219 N VAL a 79 SHEET 3 AA1 3 LEU a 87 LEU a 89 -1 N LEU a 87 O PHE a 212 SHEET 1 AA2 4 CYS a 78 SER a 82 0 SHEET 2 AA2 4 TYR a 210 LYS a 220 -1 O ARG a 219 N VAL a 79 SHEET 3 AA2 4 ARG a 120 PRO a 127 -1 N SER a 124 O ASN a 213 SHEET 4 AA2 4 GLU a 170 VAL a 172 -1 O LEU a 171 N MET a 121 SHEET 1 AA3 4 LEU a 95 PHE a 99 0 SHEET 2 AA3 4 ALA a 193 PHE a 198 -1 O LEU a 196 N GLY a 96 SHEET 3 AA3 4 GLY a 131 THR a 136 -1 N THR a 132 O ASP a 197 SHEET 4 AA3 4 GLY a 159 PHE a 161 -1 O PHE a 161 N GLY a 131 SHEET 1 AA4 2 LEU a 117 ILE a 118 0 SHEET 2 AA4 2 MET a 181 GLN a 182 -1 O MET a 181 N ILE a 118 SHEET 1 AA5 2 VAL a 139 THR a 140 0 SHEET 2 AA5 2 ALA a 148 HIS a 149 -1 O ALA a 148 N THR a 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000