HEADER MOTOR PROTEIN 27-APR-21 7EPU TITLE CRYSTAL STRUCTURE OF HSALC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-IMMUNIZED HUMAN SCFV; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: AMPLIFIED IN LIVER CANCER PROTEIN 1; COMPND 9 EC: 3.6.4.12; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: CHD1L, ALC1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACRODOMAIN, AUTOINHIBITION, DNA DAMAGE, PARP1, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,K.J.CHEN REVDAT 2 29-NOV-23 7EPU 1 REMARK REVDAT 1 14-JUL-21 7EPU 0 JRNL AUTH L.WANG,K.CHEN,Z.CHEN JRNL TITL STRUCTURAL BASIS OF ALC1/CHD1L AUTOINHIBITION AND THE JRNL TITL 2 MECHANISM OF ACTIVATION BY THE NUCLEOSOME. JRNL REF NAT COMMUN V. 12 4057 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34210977 JRNL DOI 10.1038/S41467-021-24320-4 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4000 - 8.4193 0.98 1620 153 0.2377 0.2683 REMARK 3 2 8.4193 - 6.6895 1.00 1574 146 0.2780 0.3527 REMARK 3 3 6.6895 - 5.8459 1.00 1570 145 0.3048 0.3200 REMARK 3 4 5.8459 - 5.3123 1.00 1553 145 0.2679 0.3298 REMARK 3 5 5.3123 - 4.9321 1.00 1546 144 0.2475 0.2993 REMARK 3 6 4.9321 - 4.6416 1.00 1535 142 0.2366 0.2775 REMARK 3 7 4.6416 - 4.4093 1.00 1532 144 0.2334 0.2930 REMARK 3 8 4.4093 - 4.2175 1.00 1530 141 0.2470 0.3204 REMARK 3 9 4.2175 - 4.0553 1.00 1546 145 0.2951 0.3414 REMARK 3 10 4.0553 - 3.9154 0.99 1496 138 0.3025 0.3249 REMARK 3 11 3.9154 - 3.7930 0.98 1500 140 0.3137 0.3901 REMARK 3 12 3.7930 - 3.6847 0.99 1499 140 0.3174 0.3608 REMARK 3 13 3.6847 - 3.5877 0.98 1491 139 0.3336 0.4059 REMARK 3 14 3.5877 - 3.5002 0.94 1440 134 0.3636 0.4166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.560 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 127.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 141.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-21. REMARK 100 THE DEPOSITION ID IS D_1300021771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23523 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 1.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MWY, 5JXR, 2FG1, 5YAN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM CHLORIDE, MAGNESIUM REMARK 280 CHLORIDE, ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.26650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.26650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 76.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 112.63150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 76.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.63150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.26650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 76.74000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 112.63150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.26650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 76.74000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 112.63150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 580 REMARK 465 SER A 581 REMARK 465 SER A 703 REMARK 465 SER A 704 REMARK 465 GLY A 705 REMARK 465 ILE A 706 REMARK 465 LEU A 707 REMARK 465 GLY A 708 REMARK 465 SER A 709 REMARK 465 GLY A 710 REMARK 465 GLY A 711 REMARK 465 GLY A 712 REMARK 465 GLY A 713 REMARK 465 SER A 714 REMARK 465 GLY A 715 REMARK 465 GLY A 716 REMARK 465 GLY A 717 REMARK 465 GLY A 718 REMARK 465 SER A 719 REMARK 465 GLY A 720 REMARK 465 GLY A 721 REMARK 465 GLY A 722 REMARK 465 GLY A 723 REMARK 465 SER A 724 REMARK 465 GLY A 834 REMARK 465 ILE A 835 REMARK 465 LEU A 836 REMARK 465 HIS A 837 REMARK 465 HIS A 838 REMARK 465 HIS A 839 REMARK 465 HIS A 840 REMARK 465 HIS A 841 REMARK 465 HIS A 842 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 SER B 8 REMARK 465 ARG B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 GLY B 15 REMARK 465 ILE B 458 REMARK 465 GLY B 459 REMARK 465 GLN B 460 REMARK 465 ASN B 461 REMARK 465 LYS B 462 REMARK 465 ILE B 494 REMARK 465 GLU B 495 REMARK 465 GLY B 496 REMARK 465 GLY B 497 REMARK 465 HIS B 498 REMARK 465 PHE B 499 REMARK 465 THR B 500 REMARK 465 LEU B 501 REMARK 465 GLY B 502 REMARK 465 ALA B 503 REMARK 465 GLN B 504 REMARK 465 LYS B 505 REMARK 465 PRO B 506 REMARK 465 ALA B 507 REMARK 465 ALA B 508 REMARK 465 ASP B 509 REMARK 465 ALA B 510 REMARK 465 ASP B 511 REMARK 465 LEU B 512 REMARK 465 LEU B 555 REMARK 465 PRO B 556 REMARK 465 ALA B 557 REMARK 465 ALA B 558 REMARK 465 GLU B 559 REMARK 465 GLY B 560 REMARK 465 GLY B 561 REMARK 465 SER B 562 REMARK 465 ARG B 563 REMARK 465 ASP B 564 REMARK 465 GLN B 565 REMARK 465 GLU B 566 REMARK 465 LYS B 600 REMARK 465 THR B 601 REMARK 465 LEU B 602 REMARK 465 LEU B 603 REMARK 465 GLU B 604 REMARK 465 LYS B 605 REMARK 465 ALA B 606 REMARK 465 SER B 607 REMARK 465 GLN B 608 REMARK 465 GLU B 609 REMARK 465 GLY B 610 REMARK 465 ARG B 611 REMARK 465 SER B 612 REMARK 465 LEU B 613 REMARK 465 ARG B 614 REMARK 465 ASN B 615 REMARK 465 LYS B 616 REMARK 465 GLY B 617 REMARK 465 SER B 618 REMARK 465 VAL B 619 REMARK 465 LEU B 620 REMARK 465 ILE B 621 REMARK 465 PRO B 622 REMARK 465 GLY B 623 REMARK 465 LEU B 624 REMARK 465 VAL B 625 REMARK 465 GLU B 626 REMARK 465 GLY B 627 REMARK 465 SER B 628 REMARK 465 THR B 629 REMARK 465 LYS B 630 REMARK 465 ARG B 631 REMARK 465 LYS B 632 REMARK 465 ARG B 633 REMARK 465 VAL B 634 REMARK 465 LEU B 635 REMARK 465 SER B 636 REMARK 465 PRO B 637 REMARK 465 GLU B 638 REMARK 465 GLU B 639 REMARK 465 SER B 679 REMARK 465 ASN B 680 REMARK 465 ASN B 681 REMARK 465 TYR B 682 REMARK 465 GLN B 683 REMARK 465 SER B 684 REMARK 465 PHE B 685 REMARK 465 CYS B 686 REMARK 465 LEU B 687 REMARK 465 PRO B 688 REMARK 465 SER B 689 REMARK 465 GLU B 690 REMARK 465 GLU B 691 REMARK 465 SER B 692 REMARK 465 GLU B 693 REMARK 465 PRO B 694 REMARK 465 GLU B 695 REMARK 465 ASP B 696 REMARK 465 LEU B 697 REMARK 465 GLU B 698 REMARK 465 ASN B 699 REMARK 465 GLY B 700 REMARK 465 GLU B 701 REMARK 465 GLU B 702 REMARK 465 SER B 703 REMARK 465 SER B 704 REMARK 465 ALA B 705 REMARK 465 GLU B 706 REMARK 465 LEU B 707 REMARK 465 ASP B 708 REMARK 465 TYR B 709 REMARK 465 GLN B 710 REMARK 465 ASP B 711 REMARK 465 PRO B 712 REMARK 465 ASP B 713 REMARK 465 ALA B 714 REMARK 465 PRO B 876 REMARK 465 ARG B 877 REMARK 465 SER B 878 REMARK 465 LYS B 879 REMARK 465 SER B 880 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD LYS B 77 O2B ADP B 1201 1.72 REMARK 500 CD1 ILE B 44 C2 ADP B 1201 2.00 REMARK 500 OH TYR B 719 OE2 GLU B 856 2.01 REMARK 500 O ASN B 851 OG1 THR B 855 2.01 REMARK 500 O ASP B 741 OH TYR B 766 2.05 REMARK 500 OG SER B 226 OE1 GLU B 229 2.15 REMARK 500 OH TYR B 126 OD2 ASP B 159 2.17 REMARK 500 OH TYR B 153 O ASP B 174 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 25 CB ARG B 25 CG 0.197 REMARK 500 ARG B 25 CG ARG B 25 CD 0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 25 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 592 80.97 -157.86 REMARK 500 GLN A 597 -166.42 -104.77 REMARK 500 SER A 611 30.51 -86.51 REMARK 500 ALA A 676 -161.94 -162.17 REMARK 500 ASN A 689 56.96 37.34 REMARK 500 LEU A 691 70.40 55.50 REMARK 500 ASP A 774 -59.73 69.71 REMARK 500 ASP A 819 70.68 60.96 REMARK 500 LEU A 832 69.55 -118.65 REMARK 500 GLU B 23 17.47 56.57 REMARK 500 ALA B 28 -135.78 64.19 REMARK 500 ASP B 159 44.67 -87.49 REMARK 500 SER B 165 42.00 -153.60 REMARK 500 GLU B 192 43.55 -99.63 REMARK 500 GLN B 207 0.11 -69.30 REMARK 500 GLU B 243 72.82 48.28 REMARK 500 LYS B 273 58.54 37.88 REMARK 500 ASN B 303 -67.80 -135.27 REMARK 500 HIS B 324 134.07 -176.30 REMARK 500 SER B 370 118.06 -165.60 REMARK 500 GLU B 391 -158.53 -121.93 REMARK 500 GLU B 401 -152.41 -116.54 REMARK 500 ARG B 402 -125.09 59.22 REMARK 500 PHE B 438 74.65 -110.33 REMARK 500 HIS B 456 -81.83 -102.78 REMARK 500 LEU B 489 49.50 -90.01 REMARK 500 TRP B 550 -17.77 -142.80 REMARK 500 PHE B 575 57.70 -118.18 REMARK 500 GLU B 583 59.87 34.35 REMARK 500 SER B 585 54.29 -91.05 REMARK 500 HIS B 726 76.72 -119.26 REMARK 500 ALA B 731 -139.45 51.97 REMARK 500 GLU B 732 -136.57 54.37 REMARK 500 HIS B 745 -130.96 38.08 REMARK 500 ARG B 748 -135.07 55.84 REMARK 500 SER B 759 -4.25 73.38 REMARK 500 LEU B 777 106.93 -53.74 REMARK 500 ASP B 786 -137.03 45.79 REMARK 500 ARG B 806 37.09 -87.05 REMARK 500 ASP B 807 36.11 -89.19 REMARK 500 ASN B 810 31.86 -98.57 REMARK 500 LEU B 863 -61.07 -108.77 REMARK 500 PRO B 869 95.71 -66.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 174 OD2 REMARK 620 2 ADP B1201 O1B 144.5 REMARK 620 N 1 DBREF 7EPU A 580 842 PDB 7EPU 7EPU 580 842 DBREF 7EPU B 1 880 UNP Q86WJ1 CHD1L_HUMAN 1 880 SEQRES 1 A 263 ALA SER GLN VAL GLN LEU GLN GLN SER GLY PRO GLY LEU SEQRES 2 A 263 VAL ARG PRO SER GLN THR LEU SER LEU THR CYS ALA ILE SEQRES 3 A 263 SER GLY ASP SER VAL SER ASP ASN ASP ALA ALA TRP ASN SEQRES 4 A 263 TRP VAL ARG GLN SER PRO SER ARG GLY LEU GLU TRP LEU SEQRES 5 A 263 GLY ARG THR TYR TYR ARG SER LYS TRP SER ASN GLU TYR SEQRES 6 A 263 ALA VAL PHE VAL GLN SER ARG ILE THR ILE ASN PRO ASP SEQRES 7 A 263 THR SER LYS ASN GLN PHE SER LEU HIS LEU ASN SER VAL SEQRES 8 A 263 THR PRO GLU ASP THR ALA VAL TYR TYR CYS ALA ARG ALA SEQRES 9 A 263 THR ARG PRO THR GLY ASN GLY LEU ASP ILE TRP GLY GLN SEQRES 10 A 263 GLY THR MET VAL THR VAL SER SER GLY ILE LEU GLY SER SEQRES 11 A 263 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 12 A 263 GLY SER SER TYR VAL LEU THR GLN PRO PRO SER VAL SER SEQRES 13 A 263 VAL ALA PRO GLY GLN THR ALA ARG ILE THR CYS GLY GLY SEQRES 14 A 263 ASN ASN ILE GLY SER LYS SER VAL HIS TRP TYR GLN GLN SEQRES 15 A 263 LYS PRO GLY GLN ALA PRO VAL LEU VAL VAL TYR ASP ASP SEQRES 16 A 263 SER ASP ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SEQRES 17 A 263 SER ASN SER GLY ASN THR ALA ALA LEU THR ILE SER ARG SEQRES 18 A 263 VAL GLU ALA GLY ASP GLU ALA ASP TYR TYR CYS GLN VAL SEQRES 19 A 263 TRP ASP SER SER SER ASP HIS VAL VAL PHE GLY GLY GLY SEQRES 20 A 263 THR LYS LEU THR VAL LEU SER GLY ILE LEU HIS HIS HIS SEQRES 21 A 263 HIS HIS HIS SEQRES 1 B 880 MET GLU ARG ALA GLY ALA THR SER ARG GLY GLY GLN ALA SEQRES 2 B 880 PRO GLY PHE LEU LEU ARG LEU HIS THR GLU GLY ARG ALA SEQRES 3 B 880 GLU ALA ALA ARG VAL GLN GLU GLN ASP LEU ARG GLN TRP SEQRES 4 B 880 GLY LEU THR GLY ILE HIS LEU ARG SER TYR GLN LEU GLU SEQRES 5 B 880 GLY VAL ASN TRP LEU ALA GLN ARG PHE HIS CYS GLN ASN SEQRES 6 B 880 GLY CYS ILE LEU GLY ASP GLU MET GLY LEU GLY LYS THR SEQRES 7 B 880 CYS GLN THR ILE ALA LEU PHE ILE TYR LEU ALA GLY ARG SEQRES 8 B 880 LEU ASN ASP GLU GLY PRO PHE LEU ILE LEU CYS PRO LEU SEQRES 9 B 880 SER VAL LEU SER ASN TRP LYS GLU GLU MET GLN ARG PHE SEQRES 10 B 880 ALA PRO GLY LEU SER CYS VAL THR TYR ALA GLY ASP LYS SEQRES 11 B 880 GLU GLU ARG ALA CYS LEU GLN GLN ASP LEU LYS GLN GLU SEQRES 12 B 880 SER ARG PHE HIS VAL LEU LEU THR THR TYR GLU ILE CYS SEQRES 13 B 880 LEU LYS ASP ALA SER PHE LEU LYS SER PHE PRO TRP SER SEQRES 14 B 880 VAL LEU VAL VAL ASP GLU ALA HIS ARG LEU LYS ASN GLN SEQRES 15 B 880 SER SER LEU LEU HIS LYS THR LEU SER GLU PHE SER VAL SEQRES 16 B 880 VAL PHE SER LEU LEU LEU THR GLY THR PRO ILE GLN ASN SEQRES 17 B 880 SER LEU GLN GLU LEU TYR SER LEU LEU SER PHE VAL GLU SEQRES 18 B 880 PRO ASP LEU PHE SER LYS GLU GLU VAL GLY ASP PHE ILE SEQRES 19 B 880 GLN ARG TYR GLN ASP ILE GLU LYS GLU SER GLU SER ALA SEQRES 20 B 880 SER GLU LEU HIS LYS LEU LEU GLN PRO PHE LEU LEU ARG SEQRES 21 B 880 ARG VAL LYS ALA GLU VAL ALA THR GLU LEU PRO LYS LYS SEQRES 22 B 880 THR GLU VAL VAL ILE TYR HIS GLY MET SER ALA LEU GLN SEQRES 23 B 880 LYS LYS TYR TYR LYS ALA ILE LEU MET LYS ASP LEU ASP SEQRES 24 B 880 ALA PHE GLU ASN GLU THR ALA LYS LYS VAL LYS LEU GLN SEQRES 25 B 880 ASN ILE LEU SER GLN LEU ARG LYS CYS VAL ASP HIS PRO SEQRES 26 B 880 TYR LEU PHE ASP GLY VAL GLU PRO GLU PRO PHE GLU VAL SEQRES 27 B 880 GLY ASP HIS LEU THR GLU ALA SER GLY LYS LEU HIS LEU SEQRES 28 B 880 LEU ASP LYS LEU LEU ALA PHE LEU TYR SER GLY GLY HIS SEQRES 29 B 880 ARG VAL LEU LEU PHE SER GLN MET THR GLN MET LEU ASP SEQRES 30 B 880 ILE LEU GLN ASP TYR MET ASP TYR ARG GLY TYR SER TYR SEQRES 31 B 880 GLU ARG VAL ASP GLY SER VAL ARG GLY GLU GLU ARG HIS SEQRES 32 B 880 LEU ALA ILE LYS ASN PHE GLY GLN GLN PRO ILE PHE VAL SEQRES 33 B 880 PHE LEU LEU SER THR ARG ALA GLY GLY VAL GLY MET ASN SEQRES 34 B 880 LEU THR ALA ALA ASP THR VAL ILE PHE VAL ASP SER ASP SEQRES 35 B 880 PHE ASN PRO GLN ASN ASP LEU GLN ALA ALA ALA ARG ALA SEQRES 36 B 880 HIS ARG ILE GLY GLN ASN LYS SER VAL LYS VAL ILE ARG SEQRES 37 B 880 LEU ILE GLY ARG ASP THR VAL GLU GLU ILE VAL TYR ARG SEQRES 38 B 880 LYS ALA ALA SER LYS LEU GLN LEU THR ASN MET ILE ILE SEQRES 39 B 880 GLU GLY GLY HIS PHE THR LEU GLY ALA GLN LYS PRO ALA SEQRES 40 B 880 ALA ASP ALA ASP LEU GLN LEU SER GLU ILE LEU LYS PHE SEQRES 41 B 880 GLY LEU ASP LYS LEU LEU ALA SER GLU GLY SER THR MET SEQRES 42 B 880 ASP GLU ILE ASP LEU GLU SER ILE LEU GLY GLU THR LYS SEQRES 43 B 880 ASP GLY GLN TRP VAL SER ASP ALA LEU PRO ALA ALA GLU SEQRES 44 B 880 GLY GLY SER ARG ASP GLN GLU GLU GLY LYS ASN HIS MET SEQRES 45 B 880 TYR LEU PHE GLU GLY LYS ASP TYR SER LYS GLU PRO SER SEQRES 46 B 880 LYS GLU ASP ARG LYS SER PHE GLU GLN LEU VAL ASN LEU SEQRES 47 B 880 GLN LYS THR LEU LEU GLU LYS ALA SER GLN GLU GLY ARG SEQRES 48 B 880 SER LEU ARG ASN LYS GLY SER VAL LEU ILE PRO GLY LEU SEQRES 49 B 880 VAL GLU GLY SER THR LYS ARG LYS ARG VAL LEU SER PRO SEQRES 50 B 880 GLU GLU LEU GLU ASP ARG GLN LYS LYS ARG GLN GLU ALA SEQRES 51 B 880 ALA ALA LYS ARG ARG ARG LEU ILE GLU GLU LYS LYS ARG SEQRES 52 B 880 GLN LYS GLU GLU ALA GLU HIS LYS LYS LYS MET ALA TRP SEQRES 53 B 880 TRP GLU SER ASN ASN TYR GLN SER PHE CYS LEU PRO SER SEQRES 54 B 880 GLU GLU SER GLU PRO GLU ASP LEU GLU ASN GLY GLU GLU SEQRES 55 B 880 SER SER ALA GLU LEU ASP TYR GLN ASP PRO ASP ALA THR SEQRES 56 B 880 SER LEU LYS TYR VAL SER GLY ASP VAL THR HIS PRO GLN SEQRES 57 B 880 ALA GLY ALA GLU ASP ALA LEU ILE VAL HIS CYS VAL ASP SEQRES 58 B 880 ASP SER GLY HIS TRP GLY ARG GLY GLY LEU PHE THR ALA SEQRES 59 B 880 LEU GLU LYS ARG SER ALA GLU PRO ARG LYS ILE TYR GLU SEQRES 60 B 880 LEU ALA GLY LYS MET LYS ASP LEU SER LEU GLY GLY VAL SEQRES 61 B 880 LEU LEU PHE PRO VAL ASP ASP LYS GLU SER ARG ASN LYS SEQRES 62 B 880 GLY GLN ASP LEU LEU ALA LEU ILE VAL ALA GLN HIS ARG SEQRES 63 B 880 ASP ARG SER ASN VAL LEU SER GLY ILE LYS MET ALA ALA SEQRES 64 B 880 LEU GLU GLU GLY LEU LYS LYS ILE PHE LEU ALA ALA LYS SEQRES 65 B 880 LYS LYS LYS ALA SER VAL HIS LEU PRO ARG ILE GLY HIS SEQRES 66 B 880 ALA THR LYS GLY PHE ASN TRP TYR GLY THR GLU ARG LEU SEQRES 67 B 880 ILE ARG LYS HIS LEU ALA ALA ARG GLY ILE PRO THR TYR SEQRES 68 B 880 ILE TYR TYR PHE PRO ARG SER LYS SER HET ADP B1201 27 HET MG B1202 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ HELIX 1 AA1 THR A 671 THR A 675 5 5 HELIX 2 AA2 PRO A 686 GLY A 688 5 3 HELIX 3 AA3 ASN A 750 LYS A 754 5 5 HELIX 4 AA4 GLU A 802 GLU A 806 5 5 HELIX 5 AA5 GLN B 32 TRP B 39 1 8 HELIX 6 AA6 ARG B 47 CYS B 63 1 17 HELIX 7 AA7 GLY B 76 GLY B 90 1 15 HELIX 8 AA8 PRO B 103 SER B 105 5 3 HELIX 9 AA9 VAL B 106 ALA B 118 1 13 HELIX 10 AB1 ASP B 129 ASP B 139 1 11 HELIX 11 AB2 TYR B 153 ASP B 159 1 7 HELIX 12 AB3 SER B 161 SER B 165 5 5 HELIX 13 AB4 GLU B 175 LYS B 180 5 6 HELIX 14 AB5 SER B 184 GLU B 192 1 9 HELIX 15 AB6 PRO B 205 ASN B 208 5 4 HELIX 16 AB7 SER B 209 GLU B 221 1 13 HELIX 17 AB8 SER B 226 GLU B 228 5 3 HELIX 18 AB9 GLU B 229 TYR B 237 1 9 HELIX 19 AC1 GLU B 243 GLN B 255 1 13 HELIX 20 AC2 VAL B 262 VAL B 266 5 5 HELIX 21 AC3 SER B 283 MET B 295 1 13 HELIX 22 AC4 ALA B 306 HIS B 324 1 19 HELIX 23 AC5 PRO B 325 PHE B 328 5 4 HELIX 24 AC6 ASP B 340 ALA B 345 1 6 HELIX 25 AC7 SER B 346 GLY B 363 1 18 HELIX 26 AC8 MET B 372 GLY B 387 1 16 HELIX 27 AC9 ALA B 423 GLY B 427 5 5 HELIX 28 AD1 ASN B 444 ALA B 453 1 10 HELIX 29 AD2 ARG B 454 HIS B 456 5 3 HELIX 30 AD3 THR B 474 GLN B 488 1 15 HELIX 31 AD4 LEU B 514 PHE B 520 1 7 HELIX 32 AD5 ILE B 536 ILE B 541 1 6 HELIX 33 AD6 LYS B 586 GLN B 599 1 14 HELIX 34 AD7 GLU B 641 GLU B 667 1 27 HELIX 35 AD8 GLY B 749 ARG B 758 1 10 HELIX 36 AD9 ALA B 760 MET B 772 1 13 HELIX 37 AE1 ASP B 807 VAL B 811 5 5 HELIX 38 AE2 MET B 817 LYS B 835 1 19 HELIX 39 AE3 LYS B 848 LEU B 863 1 16 SHEET 1 AA1 4 GLN A 584 SER A 588 0 SHEET 2 AA1 4 THR A 598 SER A 606 -1 O SER A 606 N GLN A 584 SHEET 3 AA1 4 GLN A 662 ASN A 668 -1 O PHE A 663 N CYS A 603 SHEET 4 AA1 4 ILE A 652 ASP A 657 -1 N ASN A 655 O SER A 664 SHEET 1 AA2 5 TRP A 640 TYR A 644 0 SHEET 2 AA2 5 GLY A 627 TYR A 636 -1 N TYR A 635 O SER A 641 SHEET 3 AA2 5 ALA A 615 SER A 623 -1 N SER A 623 O GLY A 627 SHEET 4 AA2 5 ALA A 676 THR A 684 -1 O ALA A 683 N ALA A 616 SHEET 5 AA2 5 THR A 698 VAL A 700 -1 O THR A 698 N TYR A 678 SHEET 1 AA3 4 LEU A 728 THR A 729 0 SHEET 2 AA3 4 ALA A 742 GLY A 748 -1 O GLY A 747 N THR A 729 SHEET 3 AA3 4 THR A 793 ILE A 798 -1 O LEU A 796 N ILE A 744 SHEET 4 AA3 4 PHE A 785 SER A 790 -1 N SER A 786 O THR A 797 SHEET 1 AA4 2 SER A 733 SER A 735 0 SHEET 2 AA4 2 LYS A 828 THR A 830 1 O LYS A 828 N VAL A 734 SHEET 1 AA5 4 VAL A 768 VAL A 771 0 SHEET 2 AA5 4 HIS A 757 GLN A 761 -1 N TRP A 758 O VAL A 770 SHEET 3 AA5 4 ASP A 808 ASP A 815 -1 O ASP A 808 N GLN A 761 SHEET 4 AA5 4 HIS A 820 VAL A 822 -1 O VAL A 822 N VAL A 813 SHEET 1 AA6 7 CYS B 123 THR B 125 0 SHEET 2 AA6 7 VAL B 148 THR B 152 1 O VAL B 148 N VAL B 124 SHEET 3 AA6 7 PHE B 98 CYS B 102 1 N ILE B 100 O LEU B 149 SHEET 4 AA6 7 TRP B 168 VAL B 173 1 O VAL B 172 N LEU B 101 SHEET 5 AA6 7 VAL B 195 LEU B 201 1 O LEU B 199 N LEU B 171 SHEET 6 AA6 7 CYS B 67 LEU B 69 1 N LEU B 69 O LEU B 200 SHEET 7 AA6 7 LEU B 258 LEU B 259 1 O LEU B 259 N ILE B 68 SHEET 1 AA7 6 VAL B 416 LEU B 418 0 SHEET 2 AA7 6 VAL B 366 LEU B 368 1 N VAL B 366 O PHE B 417 SHEET 3 AA7 6 THR B 435 ILE B 437 1 O THR B 435 N LEU B 367 SHEET 4 AA7 6 LYS B 465 GLY B 471 1 O LYS B 465 N VAL B 436 SHEET 5 AA7 6 GLU B 275 HIS B 280 1 N VAL B 276 O VAL B 466 SHEET 6 AA7 6 HIS B 571 TYR B 573 -1 O MET B 572 N VAL B 277 SHEET 1 AA8 5 LYS B 718 SER B 721 0 SHEET 2 AA8 5 THR B 870 TYR B 874 1 O TYR B 874 N VAL B 720 SHEET 3 AA8 5 SER B 837 LEU B 840 1 N LEU B 840 O TYR B 873 SHEET 4 AA8 5 ALA B 734 ILE B 736 1 N LEU B 735 O SER B 837 SHEET 5 AA8 5 ASP B 796 LEU B 797 1 O LEU B 797 N ILE B 736 SHEET 1 AA9 2 HIS B 738 VAL B 740 0 SHEET 2 AA9 2 LEU B 800 VAL B 802 1 O ILE B 801 N VAL B 740 SSBOND 1 CYS A 603 CYS A 680 1555 1555 2.04 SSBOND 2 CYS A 746 CYS A 811 1555 1555 2.03 LINK CD1 ILE B 44 N1 ADP B1201 1555 1555 1.43 LINK CG LYS B 77 O2B ADP B1201 1555 1555 1.38 LINK OD2 ASP B 174 MG MG B1202 1555 1555 2.79 LINK O1B ADP B1201 MG MG B1202 1555 1555 2.32 CRYST1 153.480 225.263 106.533 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006516 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004439 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009387 0.00000