HEADER OXIDOREDUCTASE 27-APR-21 7EPV TITLE CRYSTAL STRUCTURE OF TIGECYCLINE DEGRADING MONOOXYGENASE TET(X4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-DEPENDENT MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TETX MONOOXYGENASE,TETX; COMPND 5 EC: 1.14.13.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: TET(X); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MONOOXYGENASE, TET(X4), TIGECYCLINE RESISTANCE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHENG,S.CHEN REVDAT 4 29-NOV-23 7EPV 1 REMARK REVDAT 3 16-FEB-22 7EPV 1 JRNL REVDAT 2 22-DEC-21 7EPV 1 JRNL REVDAT 1 10-NOV-21 7EPV 0 JRNL AUTH Q.CHENG,Y.CHEUNG,C.LIU,Q.XIAO,B.SUN,J.ZHOU,E.W.C.CHAN, JRNL AUTH 2 R.ZHANG,S.CHEN JRNL TITL STRUCTURAL AND MECHANISTIC BASIS OF THE HIGH CATALYTIC JRNL TITL 2 ACTIVITY OF MONOOXYGENASE TET(X4) ON TIGECYCLINE. JRNL REF BMC BIOL. V. 19 262 2021 JRNL REFN ESSN 1741-7007 JRNL PMID 34895224 JRNL DOI 10.1186/S12915-021-01199-7 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 41959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2914 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.227 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3087 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2805 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4173 ; 1.725 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6546 ; 1.497 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;36.688 ;24.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;14.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.904 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3429 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300021974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4-5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 27.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 33.20 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, 0.2 M AMMONIUM ACETATE, 0.1 REMARK 280 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.17667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.26500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.08833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 140.44167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.35333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.17667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.08833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.26500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 140.44167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 561 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 GLN A 10 REMARK 465 MET A 11 REMARK 465 ASN A 247 REMARK 465 GLN A 248 REMARK 465 THR A 249 REMARK 465 GLN A 384 REMARK 465 LEU A 385 REMARK 465 LEU A 386 REMARK 465 ASN A 387 REMARK 465 VAL A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 -93.90 -130.68 REMARK 500 ASN A 112 61.54 -167.24 REMARK 500 HIS A 314 38.75 -156.98 REMARK 500 PHE A 382 7.42 -57.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FDA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 DBREF1 7EPV A 4 388 UNP A0A3T0V9Y5_ECOLX DBREF2 7EPV A A0A3T0V9Y5 1 385 SEQRES 1 A 385 MET SER ASN LYS GLU LYS GLN MET ASN LEU LEU SER ASP SEQRES 2 A 385 LYS ASN VAL ALA ILE ILE GLY GLY GLY PRO VAL GLY LEU SEQRES 3 A 385 THR MET ALA LYS LEU LEU GLN GLN ASN GLY ILE ASP VAL SEQRES 4 A 385 SER VAL TYR GLU ARG ASP ASN ASP ARG GLU ALA ARG ILE SEQRES 5 A 385 PHE GLY GLY THR LEU ASP LEU HIS LYS GLY SER GLY GLN SEQRES 6 A 385 GLU ALA MET LYS LYS ALA GLY LEU LEU GLN THR TYR TYR SEQRES 7 A 385 ASP LEU ALA LEU PRO MET GLY VAL ASN ILE ALA ASP GLU SEQRES 8 A 385 LYS GLY ASN ILE LEU SER THR LYS ASN VAL LYS PRO GLU SEQRES 9 A 385 ASN ARG PHE ASP ASN PRO GLU ILE ASN ARG ASN ASP LEU SEQRES 10 A 385 ARG ALA ILE LEU LEU ASN SER LEU GLU ASN ASP THR VAL SEQRES 11 A 385 ILE TRP ASP ARG LYS LEU VAL MET LEU GLU PRO GLY LYS SEQRES 12 A 385 LYS LYS TRP THR LEU THR PHE GLU ASN LYS PRO SER GLU SEQRES 13 A 385 THR ALA ASP LEU VAL ILE ILE ALA ASN GLY GLY MET SER SEQRES 14 A 385 LYS VAL ARG LYS PHE VAL THR ASP THR GLU VAL GLU GLU SEQRES 15 A 385 THR GLY THR PHE ASN ILE GLN ALA ASP ILE HIS HIS PRO SEQRES 16 A 385 GLU VAL ASN CYS PRO GLY PHE PHE GLN LEU CYS ASN GLY SEQRES 17 A 385 ASN ARG LEU MET ALA ALA HIS GLN GLY ASN LEU LEU PHE SEQRES 18 A 385 ALA ASN PRO ASN ASN ASN GLY ALA LEU HIS PHE GLY ILE SEQRES 19 A 385 SER PHE LYS THR PRO ASP GLU TRP LYS ASN GLN THR GLN SEQRES 20 A 385 VAL ASP PHE GLN ASN ARG ASN SER VAL VAL ASP PHE LEU SEQRES 21 A 385 LEU LYS GLU PHE SER ASP TRP ASP GLU ARG TYR LYS GLU SEQRES 22 A 385 LEU ILE ARG VAL THR SER SER PHE VAL GLY LEU ALA THR SEQRES 23 A 385 ARG ILE PHE PRO LEU GLY LYS SER TRP LYS SER LYS ARG SEQRES 24 A 385 PRO LEU PRO ILE THR MET ILE GLY ASP ALA ALA HIS LEU SEQRES 25 A 385 MET PRO PRO PHE ALA GLY GLN GLY VAL ASN SER GLY LEU SEQRES 26 A 385 MET ASP ALA LEU ILE LEU SER ASP ASN LEU THR ASN GLY SEQRES 27 A 385 LYS PHE ASN SER ILE GLU GLU ALA ILE GLU ASN TYR GLU SEQRES 28 A 385 GLN GLN MET PHE ILE TYR GLY LYS GLU ALA GLN GLU GLU SEQRES 29 A 385 SER THR GLN ASN GLU ILE GLU MET PHE LYS PRO ASP PHE SEQRES 30 A 385 THR PHE GLN GLN LEU LEU ASN VAL HET FDA A 401 53 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FDA C27 H35 N9 O15 P2 FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *244(H2 O) HELIX 1 AA1 GLY A 25 GLN A 37 1 13 HELIX 2 AA2 SER A 66 ALA A 74 1 9 HELIX 3 AA3 LEU A 76 ALA A 84 1 9 HELIX 4 AA4 LYS A 105 ARG A 109 5 5 HELIX 5 AA5 ASN A 116 LEU A 128 1 13 HELIX 6 AA6 HIS A 197 CYS A 202 1 6 HELIX 7 AA7 CYS A 202 ASN A 210 1 9 HELIX 8 AA8 PRO A 242 LYS A 246 5 5 HELIX 9 AA9 ASN A 255 PHE A 267 1 13 HELIX 10 AB1 ASP A 271 THR A 281 1 11 HELIX 11 AB2 GLY A 310 LEU A 315 1 6 HELIX 12 AB3 GLY A 323 ASN A 340 1 18 HELIX 13 AB4 SER A 345 PHE A 376 1 32 SHEET 1 AA1 5 VAL A 133 ILE A 134 0 SHEET 2 AA1 5 ASP A 41 TYR A 45 1 N VAL A 44 O ILE A 134 SHEET 3 AA1 5 ASN A 18 ILE A 22 1 N ILE A 21 O SER A 43 SHEET 4 AA1 5 LEU A 163 ILE A 166 1 O ILE A 165 N ILE A 22 SHEET 5 AA1 5 ILE A 306 MET A 308 1 O THR A 307 N ILE A 166 SHEET 1 AA2 2 LEU A 60 ASP A 61 0 SHEET 2 AA2 2 GLU A 114 ILE A 115 -1 O ILE A 115 N LEU A 60 SHEET 1 AA3 7 ILE A 98 LYS A 102 0 SHEET 2 AA3 7 VAL A 89 ALA A 92 -1 N ILE A 91 O LEU A 99 SHEET 3 AA3 7 ARG A 213 HIS A 218 1 O ARG A 213 N ASN A 90 SHEET 4 AA3 7 ASN A 221 ASN A 229 -1 O LEU A 223 N ALA A 216 SHEET 5 AA3 7 ALA A 232 LYS A 240 -1 O ALA A 232 N ASN A 229 SHEET 6 AA3 7 GLU A 184 ILE A 195 -1 N ILE A 191 O ILE A 237 SHEET 7 AA3 7 VAL A 285 ILE A 291 -1 O VAL A 285 N GLN A 192 SHEET 1 AA4 3 LEU A 139 PRO A 144 0 SHEET 2 AA4 3 TRP A 149 PHE A 153 -1 O THR A 152 N VAL A 140 SHEET 3 AA4 3 LYS A 156 ALA A 161 -1 O GLU A 159 N LEU A 151 SITE 1 AC1 33 GLY A 23 GLY A 25 PRO A 26 VAL A 27 SITE 2 AC1 33 TYR A 45 GLU A 46 ARG A 47 ASP A 48 SITE 3 AC1 33 LEU A 60 ARG A 117 ARG A 121 ARG A 137 SITE 4 AC1 33 LYS A 138 LEU A 139 ASN A 168 GLN A 192 SITE 5 AC1 33 LEU A 287 GLY A 310 ASP A 311 PRO A 318 SITE 6 AC1 33 GLY A 323 VAL A 324 HOH A 546 HOH A 563 SITE 7 AC1 33 HOH A 567 HOH A 610 HOH A 615 HOH A 630 SITE 8 AC1 33 HOH A 645 HOH A 648 HOH A 661 HOH A 673 SITE 9 AC1 33 HOH A 686 SITE 1 AC2 9 LEU A 83 GLU A 114 ILE A 115 ASN A 116 SITE 2 AC2 9 ASP A 119 ASN A 228 ASN A 230 GOL A 403 SITE 3 AC2 9 HOH A 542 SITE 1 AC3 6 LEU A 83 ALA A 84 ASN A 230 GOL A 402 SITE 2 AC3 6 HOH A 511 HOH A 542 SITE 1 AC4 6 TYR A 81 ALA A 84 PRO A 86 ARG A 109 SITE 2 AC4 6 PRO A 113 HOH A 596 CRYST1 97.530 97.530 168.530 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010253 0.005920 0.000000 0.00000 SCALE2 0.000000 0.011839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005934 0.00000