HEADER TRANSFERASE 08-MAY-21 7ERY TITLE APO FORM OF THE GLYCOSYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS03G0702000, OSNPB_030702000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYLTRANSFERASE APO FORM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU REVDAT 3 03-APR-24 7ERY 1 REMARK REVDAT 2 15-DEC-21 7ERY 1 JRNL REVDAT 1 08-DEC-21 7ERY 0 JRNL AUTH J.ZHANG,M.TANG,Y.CHEN,D.KE,J.ZHOU,X.XU,W.YANG,J.HE,H.DONG, JRNL AUTH 2 Y.WEI,J.H.NAISMITH,Y.LIN,X.ZHU,W.CHENG JRNL TITL CATALYTIC FLEXIBILITY OF RICE GLYCOSYLTRANSFERASE OSUGT91C1 JRNL TITL 2 FOR THE PRODUCTION OF PALATABLE STEVIOL GLYCOSIDES. JRNL REF NAT COMMUN V. 12 7030 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34857750 JRNL DOI 10.1038/S41467-021-27144-4 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.764 REMARK 3 FREE R VALUE TEST SET COUNT : 2006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79500 REMARK 3 B22 (A**2) : 0.05400 REMARK 3 B33 (A**2) : -0.84900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3220 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3095 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4381 ; 1.549 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7110 ; 1.406 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;31.002 ;19.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;12.936 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3650 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 744 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 48 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1584 ; 0.162 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 2.178 ; 2.032 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1644 ; 2.177 ; 2.030 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2058 ; 3.071 ; 3.038 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2059 ; 3.071 ; 3.040 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 3.452 ; 2.435 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1576 ; 3.451 ; 2.436 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2323 ; 4.991 ; 3.499 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2324 ; 4.991 ; 3.500 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 15.721 22.513 21.197 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.0353 REMARK 3 T33: 0.0668 T12: -0.0031 REMARK 3 T13: -0.0077 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.4594 L22: 1.4045 REMARK 3 L33: 0.7213 L12: 0.5271 REMARK 3 L13: -0.1060 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: -0.0245 S13: -0.1968 REMARK 3 S21: -0.0658 S22: -0.0405 S23: -0.1676 REMARK 3 S31: 0.0503 S32: 0.1098 S33: -0.0058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 1.819 35.324 20.457 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0360 REMARK 3 T33: 0.0570 T12: -0.0063 REMARK 3 T13: -0.0068 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9549 L22: 0.6947 REMARK 3 L33: 1.5876 L12: -0.1647 REMARK 3 L13: -0.0646 L23: -0.1186 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0542 S13: 0.1186 REMARK 3 S21: -0.1195 S22: 0.0160 S23: 0.0926 REMARK 3 S31: 0.0009 S32: -0.0498 S33: -0.0570 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 10.430 29.895 50.164 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.0982 REMARK 3 T33: 0.0549 T12: 0.0005 REMARK 3 T13: -0.0481 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.1082 L22: 1.1491 REMARK 3 L33: 2.2710 L12: 0.6118 REMARK 3 L13: 0.3785 L23: 0.1053 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: -0.1070 S13: -0.0347 REMARK 3 S21: 0.2523 S22: 0.0121 S23: -0.0765 REMARK 3 S31: 0.1553 S32: 0.0063 S33: -0.1506 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 20.132 32.405 54.170 REMARK 3 T TENSOR REMARK 3 T11: 0.2476 T22: 0.1399 REMARK 3 T33: 0.1245 T12: 0.0151 REMARK 3 T13: -0.0762 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.4619 L22: 0.6672 REMARK 3 L33: 3.3452 L12: 0.5516 REMARK 3 L13: 1.0564 L23: 0.7026 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: -0.0744 S13: -0.0889 REMARK 3 S21: 0.1070 S22: 0.0207 S23: -0.1149 REMARK 3 S31: 0.1341 S32: 0.2321 S33: -0.2099 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 339 A 433 REMARK 3 ORIGIN FOR THE GROUP (A): 3.780 38.151 42.901 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.0743 REMARK 3 T33: 0.0678 T12: 0.0190 REMARK 3 T13: 0.0081 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.0636 L22: 0.6634 REMARK 3 L33: 2.9288 L12: 0.3630 REMARK 3 L13: 1.3649 L23: 0.3534 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -0.1004 S13: 0.0973 REMARK 3 S21: 0.2464 S22: 0.0009 S23: 0.0592 REMARK 3 S31: -0.2384 S32: -0.1719 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 434 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): -7.325 25.008 26.239 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0746 REMARK 3 T33: 0.0849 T12: -0.0246 REMARK 3 T13: -0.0109 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.1285 L22: 2.0006 REMARK 3 L33: 6.3928 L12: -0.1668 REMARK 3 L13: -0.2830 L23: 2.5778 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0034 S13: -0.1909 REMARK 3 S21: 0.0691 S22: -0.0735 S23: 0.2169 REMARK 3 S31: 0.1439 S32: -0.4447 S33: 0.0659 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ERY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PARTIAL MODEL FROM A LOW RESOLUTION SAD DATA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000 HEPES-NAOH BUFFER PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.13400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.70650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.91850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.70650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.13400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.91850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 TYR A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 162 REMARK 465 ARG A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 ARG A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 PRO A 172 REMARK 465 ALA A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 GLN A 177 REMARK 465 GLY A 178 REMARK 465 ARG A 179 REMARK 465 PRO A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 PRO A 184 REMARK 465 THR A 185 REMARK 465 PHE A 186 REMARK 465 GLU A 187 REMARK 465 VAL A 188 REMARK 465 ALA A 189 REMARK 465 ARG A 190 REMARK 465 MET A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 ILE A 194 REMARK 465 ARG A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 SER A 200 REMARK 465 GLY A 201 REMARK 465 LYS A 461 REMARK 465 ASP A 462 REMARK 465 LEU A 463 REMARK 465 GLU A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 131 55.68 -91.26 REMARK 500 ARG A 221 69.28 -111.75 REMARK 500 SER A 235 -50.98 -132.93 REMARK 500 GLU A 283 -73.69 -64.36 REMARK 500 VAL A 284 77.78 41.87 REMARK 500 VAL A 421 -62.68 -99.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ERX RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH UDP AND STB DBREF 7ERY A 1 462 UNP Q0DPB7 Q0DPB7_ORYSJ 1 462 SEQADV 7ERY LEU A 463 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY GLU A 464 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 465 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 466 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 467 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 468 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 469 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ERY HIS A 470 UNP Q0DPB7 EXPRESSION TAG SEQRES 1 A 470 MET ASP SER GLY TYR SER SER SER TYR ALA ALA ALA ALA SEQRES 2 A 470 GLY MET HIS VAL VAL ILE CYS PRO TRP LEU ALA PHE GLY SEQRES 3 A 470 HIS LEU LEU PRO CYS LEU ASP LEU ALA GLN ARG LEU ALA SEQRES 4 A 470 SER ARG GLY HIS ARG VAL SER PHE VAL SER THR PRO ARG SEQRES 5 A 470 ASN ILE SER ARG LEU PRO PRO VAL ARG PRO ALA LEU ALA SEQRES 6 A 470 PRO LEU VAL ALA PHE VAL ALA LEU PRO LEU PRO ARG VAL SEQRES 7 A 470 GLU GLY LEU PRO ASP GLY ALA GLU SER THR ASN ASP VAL SEQRES 8 A 470 PRO HIS ASP ARG PRO ASP MET VAL GLU LEU HIS ARG ARG SEQRES 9 A 470 ALA PHE ASP GLY LEU ALA ALA PRO PHE SER GLU PHE LEU SEQRES 10 A 470 GLY THR ALA CYS ALA ASP TRP VAL ILE VAL ASP VAL PHE SEQRES 11 A 470 HIS HIS TRP ALA ALA ALA ALA ALA LEU GLU HIS LYS VAL SEQRES 12 A 470 PRO CYS ALA MET MET LEU LEU GLY SER ALA HIS MET ILE SEQRES 13 A 470 ALA SER ILE ALA ASP ARG ARG LEU GLU ARG ALA GLU THR SEQRES 14 A 470 GLU SER PRO ALA ALA ALA GLY GLN GLY ARG PRO ALA ALA SEQRES 15 A 470 ALA PRO THR PHE GLU VAL ALA ARG MET LYS LEU ILE ARG SEQRES 16 A 470 THR LYS GLY SER SER GLY MET SER LEU ALA GLU ARG PHE SEQRES 17 A 470 SER LEU THR LEU SER ARG SER SER LEU VAL VAL GLY ARG SEQRES 18 A 470 SER CYS VAL GLU PHE GLU PRO GLU THR VAL PRO LEU LEU SEQRES 19 A 470 SER THR LEU ARG GLY LYS PRO ILE THR PHE LEU GLY LEU SEQRES 20 A 470 MET PRO PRO LEU HIS GLU GLY ARG ARG GLU ASP GLY GLU SEQRES 21 A 470 ASP ALA THR VAL ARG TRP LEU ASP ALA GLN PRO ALA LYS SEQRES 22 A 470 SER VAL VAL TYR VAL ALA LEU GLY SER GLU VAL PRO LEU SEQRES 23 A 470 GLY VAL GLU LYS VAL HIS GLU LEU ALA LEU GLY LEU GLU SEQRES 24 A 470 LEU ALA GLY THR ARG PHE LEU TRP ALA LEU ARG LYS PRO SEQRES 25 A 470 THR GLY VAL SER ASP ALA ASP LEU LEU PRO ALA GLY PHE SEQRES 26 A 470 GLU GLU ARG THR ARG GLY ARG GLY VAL VAL ALA THR ARG SEQRES 27 A 470 TRP VAL PRO GLN MET SER ILE LEU ALA HIS ALA ALA VAL SEQRES 28 A 470 GLY ALA PHE LEU THR HIS CYS GLY TRP ASN SER THR ILE SEQRES 29 A 470 GLU GLY LEU MET PHE GLY HIS PRO LEU ILE MET LEU PRO SEQRES 30 A 470 ILE PHE GLY ASP GLN GLY PRO ASN ALA ARG LEU ILE GLU SEQRES 31 A 470 ALA LYS ASN ALA GLY LEU GLN VAL ALA ARG ASN ASP GLY SEQRES 32 A 470 ASP GLY SER PHE ASP ARG GLU GLY VAL ALA ALA ALA ILE SEQRES 33 A 470 ARG ALA VAL ALA VAL GLU GLU GLU SER SER LYS VAL PHE SEQRES 34 A 470 GLN ALA LYS ALA LYS LYS LEU GLN GLU ILE VAL ALA ASP SEQRES 35 A 470 MET ALA CYS HIS GLU ARG TYR ILE ASP GLY PHE ILE GLN SEQRES 36 A 470 GLN LEU ARG SER TYR LYS ASP LEU GLU HIS HIS HIS HIS SEQRES 37 A 470 HIS HIS FORMUL 2 HOH *191(H2 O) HELIX 1 AA1 ALA A 24 SER A 40 1 17 HELIX 2 AA2 THR A 50 ARG A 56 1 7 HELIX 3 AA3 ARG A 61 ALA A 65 5 5 HELIX 4 AA4 SER A 87 VAL A 91 5 5 HELIX 5 AA5 ARG A 95 GLY A 108 1 14 HELIX 6 AA6 LEU A 109 THR A 119 1 11 HELIX 7 AA7 HIS A 131 HIS A 141 1 11 HELIX 8 AA8 SER A 152 ASP A 161 1 10 HELIX 9 AA9 SER A 203 SER A 215 1 13 HELIX 10 AB1 THR A 230 LEU A 234 5 5 HELIX 11 AB2 ARG A 255 GLU A 260 5 6 HELIX 12 AB3 ASP A 261 ALA A 269 1 9 HELIX 13 AB4 GLY A 287 GLY A 302 1 16 HELIX 14 AB5 GLY A 324 ARG A 330 1 7 HELIX 15 AB6 PRO A 341 ALA A 347 1 7 HELIX 16 AB7 GLY A 359 MET A 368 1 10 HELIX 17 AB8 PHE A 379 ASP A 381 5 3 HELIX 18 AB9 GLN A 382 LYS A 392 1 11 HELIX 19 AC1 ASP A 408 VAL A 421 1 14 HELIX 20 AC2 GLU A 422 ALA A 441 1 20 HELIX 21 AC3 ASP A 442 TYR A 460 1 19 SHEET 1 AA1 8 VAL A 68 ALA A 72 0 SHEET 2 AA1 8 ARG A 44 SER A 49 1 N VAL A 45 O ALA A 69 SHEET 3 AA1 8 HIS A 16 CYS A 20 1 N VAL A 17 O ARG A 44 SHEET 4 AA1 8 TRP A 124 VAL A 127 1 O TRP A 124 N VAL A 18 SHEET 5 AA1 8 CYS A 145 LEU A 149 1 O MET A 148 N VAL A 127 SHEET 6 AA1 8 LEU A 217 GLY A 220 1 O VAL A 219 N LEU A 149 SHEET 7 AA1 8 LYS A 240 PHE A 244 1 O THR A 243 N GLY A 220 SHEET 8 AA1 8 THR A 236 LEU A 237 -1 N LEU A 237 O LYS A 240 SHEET 1 AA2 6 GLY A 333 ALA A 336 0 SHEET 2 AA2 6 ARG A 304 ALA A 308 1 N TRP A 307 O ALA A 336 SHEET 3 AA2 6 VAL A 275 ALA A 279 1 N VAL A 278 O LEU A 306 SHEET 4 AA2 6 VAL A 351 HIS A 357 1 O LEU A 355 N TYR A 277 SHEET 5 AA2 6 LEU A 373 LEU A 376 1 O LEU A 376 N THR A 356 SHEET 6 AA2 6 GLY A 395 GLN A 397 1 O LEU A 396 N MET A 375 CRYST1 50.268 79.837 105.413 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019893 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009486 0.00000