HEADER TRANSFERASE 08-MAY-21 7ES2 TITLE A MUTANT OF GLYCOSYKTRANSFERASE IN COMPLEX WITH UDP AND REB D COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OS03G0702000, OSNPB_030702000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS H27A MUTANT, RICE GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHU REVDAT 3 03-APR-24 7ES2 1 REMARK REVDAT 2 15-DEC-21 7ES2 1 JRNL REVDAT 1 08-DEC-21 7ES2 0 JRNL AUTH J.ZHANG,M.TANG,Y.CHEN,D.KE,J.ZHOU,X.XU,W.YANG,J.HE,H.DONG, JRNL AUTH 2 Y.WEI,J.H.NAISMITH,Y.LIN,X.ZHU,W.CHENG JRNL TITL CATALYTIC FLEXIBILITY OF RICE GLYCOSYLTRANSFERASE OSUGT91C1 JRNL TITL 2 FOR THE PRODUCTION OF PALATABLE STEVIOL GLYCOSIDES. JRNL REF NAT COMMUN V. 12 7030 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34857750 JRNL DOI 10.1038/S41467-021-27144-4 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.909 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1513 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3088 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.81900 REMARK 3 B22 (A**2) : -2.02400 REMARK 3 B33 (A**2) : -3.79500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.299 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.933 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3285 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3133 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4490 ; 1.277 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7220 ; 1.120 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 6.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;30.113 ;20.062 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;12.995 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;10.566 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3601 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 639 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 26 ; 0.151 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1560 ; 0.150 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 85 ; 0.106 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 3.629 ; 3.690 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1622 ; 3.623 ; 3.688 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2027 ; 5.034 ; 5.542 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2028 ; 5.032 ; 5.544 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 4.639 ; 4.397 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1663 ; 4.638 ; 4.400 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2463 ; 6.653 ; 6.463 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2464 ; 6.651 ; 6.466 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -13.857 18.129 -31.022 REMARK 3 T TENSOR REMARK 3 T11: 0.4285 T22: 0.0607 REMARK 3 T33: 0.1084 T12: 0.0152 REMARK 3 T13: 0.0062 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.3714 L22: 2.8260 REMARK 3 L33: 3.1664 L12: -0.0425 REMARK 3 L13: 0.3846 L23: -0.8568 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: -0.0054 S13: 0.0931 REMARK 3 S21: -0.1178 S22: 0.0328 S23: 0.3684 REMARK 3 S31: -0.1636 S32: -0.3966 S33: -0.1109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): -3.811 2.069 -34.142 REMARK 3 T TENSOR REMARK 3 T11: 0.3884 T22: 0.0379 REMARK 3 T33: 0.2019 T12: 0.0102 REMARK 3 T13: -0.0481 T23: -0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.4887 L22: 4.1677 REMARK 3 L33: 5.2987 L12: -1.3113 REMARK 3 L13: 0.1019 L23: -0.8204 REMARK 3 S TENSOR REMARK 3 S11: 0.1151 S12: 0.0396 S13: -0.0920 REMARK 3 S21: -0.2178 S22: 0.0152 S23: -0.0663 REMARK 3 S31: 0.2397 S32: 0.1348 S33: -0.1304 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -1.799 21.183 -12.971 REMARK 3 T TENSOR REMARK 3 T11: 0.5792 T22: 0.0242 REMARK 3 T33: 0.2882 T12: -0.0229 REMARK 3 T13: -0.0325 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 5.1124 L22: 6.6971 REMARK 3 L33: 7.6966 L12: -0.3507 REMARK 3 L13: -4.4668 L23: 5.3225 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: 0.1306 S13: 0.1310 REMARK 3 S21: 0.0560 S22: 0.1155 S23: -0.0390 REMARK 3 S31: 0.0036 S32: -0.0341 S33: -0.2173 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): -9.104 4.530 -6.947 REMARK 3 T TENSOR REMARK 3 T11: 0.4155 T22: 0.0193 REMARK 3 T33: 0.0273 T12: 0.0034 REMARK 3 T13: 0.0161 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.9089 L22: 1.9436 REMARK 3 L33: 3.6578 L12: -0.2801 REMARK 3 L13: -0.5519 L23: -0.2649 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.0073 S13: -0.0539 REMARK 3 S21: 0.2401 S22: 0.1779 S23: 0.1302 REMARK 3 S31: 0.0718 S32: -0.1048 S33: -0.1067 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 0.046 -3.588 -8.853 REMARK 3 T TENSOR REMARK 3 T11: 0.5517 T22: 0.1539 REMARK 3 T33: 0.0380 T12: 0.0744 REMARK 3 T13: -0.0260 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.6603 L22: 3.2015 REMARK 3 L33: 4.7642 L12: 0.4734 REMARK 3 L13: -1.6681 L23: -1.8667 REMARK 3 S TENSOR REMARK 3 S11: -0.1781 S12: -0.1277 S13: -0.0206 REMARK 3 S21: 0.2330 S22: 0.0652 S23: -0.2927 REMARK 3 S31: 0.3170 S32: 0.6927 S33: 0.1128 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 446 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 6.835 14.268 -34.840 REMARK 3 T TENSOR REMARK 3 T11: 0.2403 T22: 0.1723 REMARK 3 T33: 0.1932 T12: 0.0152 REMARK 3 T13: 0.0650 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.6419 L22: 3.4877 REMARK 3 L33: 8.8771 L12: 0.8339 REMARK 3 L13: 1.5737 L23: -2.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.1495 S12: 0.2088 S13: 0.1427 REMARK 3 S21: -0.0974 S22: -0.1009 S23: -0.2200 REMARK 3 S31: -0.0637 S32: 0.3254 S33: -0.0486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ES2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 36.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 36.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.02700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO FORM OF THIS PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000 AND 0.1 M HEPES PH6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.22200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.32250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.74800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.32250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.22200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.74800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 TYR A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 162 REMARK 465 ARG A 163 REMARK 465 LEU A 164 REMARK 465 GLU A 165 REMARK 465 ARG A 166 REMARK 465 ALA A 167 REMARK 465 GLU A 168 REMARK 465 THR A 169 REMARK 465 GLU A 170 REMARK 465 SER A 171 REMARK 465 PRO A 172 REMARK 465 ALA A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 GLY A 176 REMARK 465 GLN A 177 REMARK 465 GLY A 178 REMARK 465 ARG A 179 REMARK 465 PRO A 180 REMARK 465 ALA A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 PRO A 184 REMARK 465 THR A 185 REMARK 465 PHE A 186 REMARK 465 GLU A 187 REMARK 465 VAL A 188 REMARK 465 ALA A 189 REMARK 465 ARG A 190 REMARK 465 MET A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 ILE A 194 REMARK 465 ARG A 195 REMARK 465 THR A 196 REMARK 465 LYS A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 SER A 200 REMARK 465 GLY A 201 REMARK 465 TYR A 460 REMARK 465 LYS A 461 REMARK 465 ASP A 462 REMARK 465 LEU A 463 REMARK 465 GLU A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 221 73.94 -116.70 REMARK 500 SER A 222 -168.88 -161.76 REMARK 500 LEU A 280 44.97 -108.92 REMARK 500 GLU A 283 -29.46 -150.13 REMARK 500 THR A 337 42.96 -99.95 REMARK 500 VAL A 421 -66.83 -107.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDO A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ERX RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH UDP AND STB REMARK 900 RELATED ID: 7ERY RELATED DB: PDB REMARK 900 APO FORM OF THE SAME PROTEIN REMARK 900 RELATED ID: 7ES0 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH UDP AND REX REMARK 900 RELATED ID: 7ES1 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH UDP AND ST DBREF 7ES2 A 1 462 UNP Q0DPB7 Q0DPB7_ORYSJ 1 462 SEQADV 7ES2 ALA A 27 UNP Q0DPB7 HIS 27 ENGINEERED MUTATION SEQADV 7ES2 LEU A 463 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 GLU A 464 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 465 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 466 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 467 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 468 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 469 UNP Q0DPB7 EXPRESSION TAG SEQADV 7ES2 HIS A 470 UNP Q0DPB7 EXPRESSION TAG SEQRES 1 A 470 MET ASP SER GLY TYR SER SER SER TYR ALA ALA ALA ALA SEQRES 2 A 470 GLY MET HIS VAL VAL ILE CYS PRO TRP LEU ALA PHE GLY SEQRES 3 A 470 ALA LEU LEU PRO CYS LEU ASP LEU ALA GLN ARG LEU ALA SEQRES 4 A 470 SER ARG GLY HIS ARG VAL SER PHE VAL SER THR PRO ARG SEQRES 5 A 470 ASN ILE SER ARG LEU PRO PRO VAL ARG PRO ALA LEU ALA SEQRES 6 A 470 PRO LEU VAL ALA PHE VAL ALA LEU PRO LEU PRO ARG VAL SEQRES 7 A 470 GLU GLY LEU PRO ASP GLY ALA GLU SER THR ASN ASP VAL SEQRES 8 A 470 PRO HIS ASP ARG PRO ASP MET VAL GLU LEU HIS ARG ARG SEQRES 9 A 470 ALA PHE ASP GLY LEU ALA ALA PRO PHE SER GLU PHE LEU SEQRES 10 A 470 GLY THR ALA CYS ALA ASP TRP VAL ILE VAL ASP VAL PHE SEQRES 11 A 470 HIS HIS TRP ALA ALA ALA ALA ALA LEU GLU HIS LYS VAL SEQRES 12 A 470 PRO CYS ALA MET MET LEU LEU GLY SER ALA HIS MET ILE SEQRES 13 A 470 ALA SER ILE ALA ASP ARG ARG LEU GLU ARG ALA GLU THR SEQRES 14 A 470 GLU SER PRO ALA ALA ALA GLY GLN GLY ARG PRO ALA ALA SEQRES 15 A 470 ALA PRO THR PHE GLU VAL ALA ARG MET LYS LEU ILE ARG SEQRES 16 A 470 THR LYS GLY SER SER GLY MET SER LEU ALA GLU ARG PHE SEQRES 17 A 470 SER LEU THR LEU SER ARG SER SER LEU VAL VAL GLY ARG SEQRES 18 A 470 SER CYS VAL GLU PHE GLU PRO GLU THR VAL PRO LEU LEU SEQRES 19 A 470 SER THR LEU ARG GLY LYS PRO ILE THR PHE LEU GLY LEU SEQRES 20 A 470 MET PRO PRO LEU HIS GLU GLY ARG ARG GLU ASP GLY GLU SEQRES 21 A 470 ASP ALA THR VAL ARG TRP LEU ASP ALA GLN PRO ALA LYS SEQRES 22 A 470 SER VAL VAL TYR VAL ALA LEU GLY SER GLU VAL PRO LEU SEQRES 23 A 470 GLY VAL GLU LYS VAL HIS GLU LEU ALA LEU GLY LEU GLU SEQRES 24 A 470 LEU ALA GLY THR ARG PHE LEU TRP ALA LEU ARG LYS PRO SEQRES 25 A 470 THR GLY VAL SER ASP ALA ASP LEU LEU PRO ALA GLY PHE SEQRES 26 A 470 GLU GLU ARG THR ARG GLY ARG GLY VAL VAL ALA THR ARG SEQRES 27 A 470 TRP VAL PRO GLN MET SER ILE LEU ALA HIS ALA ALA VAL SEQRES 28 A 470 GLY ALA PHE LEU THR HIS CYS GLY TRP ASN SER THR ILE SEQRES 29 A 470 GLU GLY LEU MET PHE GLY HIS PRO LEU ILE MET LEU PRO SEQRES 30 A 470 ILE PHE GLY ASP GLN GLY PRO ASN ALA ARG LEU ILE GLU SEQRES 31 A 470 ALA LYS ASN ALA GLY LEU GLN VAL ALA ARG ASN ASP GLY SEQRES 32 A 470 ASP GLY SER PHE ASP ARG GLU GLY VAL ALA ALA ALA ILE SEQRES 33 A 470 ARG ALA VAL ALA VAL GLU GLU GLU SER SER LYS VAL PHE SEQRES 34 A 470 GLN ALA LYS ALA LYS LYS LEU GLN GLU ILE VAL ALA ASP SEQRES 35 A 470 MET ALA CYS HIS GLU ARG TYR ILE ASP GLY PHE ILE GLN SEQRES 36 A 470 GLN LEU ARG SER TYR LYS ASP LEU GLU HIS HIS HIS HIS SEQRES 37 A 470 HIS HIS HET UDP A 501 25 HET JDO A 502 78 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM JDO REBAUDIOSIDE D FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 JDO C50 H80 O28 FORMUL 4 HOH *30(H2 O) HELIX 1 AA1 ALA A 24 SER A 40 1 17 HELIX 2 AA2 THR A 50 ARG A 56 1 7 HELIX 3 AA3 ARG A 61 PRO A 66 5 6 HELIX 4 AA4 ARG A 95 GLY A 108 1 14 HELIX 5 AA5 LEU A 109 THR A 119 1 11 HELIX 6 AA6 HIS A 131 HIS A 141 1 11 HELIX 7 AA7 SER A 152 ASP A 161 1 10 HELIX 8 AA8 SER A 203 ARG A 214 1 12 HELIX 9 AA9 LEU A 251 ARG A 256 1 6 HELIX 10 AB1 ASP A 261 ALA A 269 1 9 HELIX 11 AB2 GLY A 287 GLY A 302 1 16 HELIX 12 AB3 SER A 316 LEU A 321 1 6 HELIX 13 AB4 GLY A 324 ARG A 330 1 7 HELIX 14 AB5 PRO A 341 HIS A 348 1 8 HELIX 15 AB6 GLY A 359 PHE A 369 1 11 HELIX 16 AB7 ASP A 381 LYS A 392 1 12 HELIX 17 AB8 ASP A 408 VAL A 421 1 14 HELIX 18 AB9 GLU A 422 ALA A 441 1 20 HELIX 19 AC1 ASP A 442 SER A 459 1 18 SHEET 1 AA1 8 VAL A 68 ALA A 72 0 SHEET 2 AA1 8 ARG A 44 SER A 49 1 N PHE A 47 O ALA A 69 SHEET 3 AA1 8 HIS A 16 CYS A 20 1 N ILE A 19 O VAL A 48 SHEET 4 AA1 8 TRP A 124 VAL A 127 1 O ILE A 126 N VAL A 18 SHEET 5 AA1 8 CYS A 145 LEU A 149 1 O MET A 148 N VAL A 127 SHEET 6 AA1 8 LEU A 217 GLY A 220 1 O VAL A 219 N LEU A 149 SHEET 7 AA1 8 LYS A 240 PHE A 244 1 O THR A 243 N VAL A 218 SHEET 8 AA1 8 THR A 236 LEU A 237 -1 N LEU A 237 O LYS A 240 SHEET 1 AA2 6 GLY A 333 ALA A 336 0 SHEET 2 AA2 6 ARG A 304 ALA A 308 1 N TRP A 307 O VAL A 334 SHEET 3 AA2 6 VAL A 275 ALA A 279 1 N VAL A 278 O LEU A 306 SHEET 4 AA2 6 VAL A 351 THR A 356 1 O GLY A 352 N VAL A 275 SHEET 5 AA2 6 LEU A 373 MET A 375 1 O ILE A 374 N PHE A 354 SHEET 6 AA2 6 GLY A 395 GLN A 397 1 O LEU A 396 N MET A 375 SITE 1 AC1 15 GLY A 26 ARG A 255 SER A 282 TRP A 339 SITE 2 AC1 15 VAL A 340 GLN A 342 HIS A 357 GLY A 359 SITE 3 AC1 15 TRP A 360 ASN A 361 SER A 362 GLU A 365 SITE 4 AC1 15 JDO A 502 HOH A 603 HOH A 608 SITE 1 AC2 15 TRP A 22 GLY A 26 ALA A 27 THR A 88 SITE 2 AC2 15 HIS A 93 ARG A 103 ASP A 128 VAL A 129 SITE 3 AC2 15 PHE A 130 MET A 155 LEU A 204 GLU A 283 SITE 4 AC2 15 GLY A 380 ASP A 381 UDP A 501 CRYST1 54.444 83.496 110.645 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009038 0.00000