HEADER NUCLEAR PROTEIN 22-JUN-21 7F5M TITLE CRYSTAL STRUCTURE OF SAS5 YEATS DOMAIN IN COMPLEX WITH H3K27BZ PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOMETHING ABOUT SILENCING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LYS-GLN-LEU-ALA-SER-LYS-ALA-ALA-ARG-LBZ-SER-ALA-PRO-SER- COMPND 7 THR-GLY-GLY-VAL-LYS-TYR; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: SAS5, YOR213C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_TAXID: 4932 KEYWDS HISTONE MODIFICATION, HISTONE BENZOYLATION, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, YEATS DOMAIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.WANG,F.YAN,Y.CHEN REVDAT 3 29-NOV-23 7F5M 1 LINK REVDAT 2 30-MAR-22 7F5M 1 JRNL REVDAT 1 16-MAR-22 7F5M 0 JRNL AUTH D.WANG,F.YAN,P.WU,K.GE,M.LI,T.LI,Y.GAO,C.PENG,Y.CHEN JRNL TITL GLOBAL PROFILING OF REGULATORY ELEMENTS IN THE HISTONE JRNL TITL 2 BENZOYLATION PATHWAY. JRNL REF NAT COMMUN V. 13 1369 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35296687 JRNL DOI 10.1038/S41467-022-29057-2 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4000 - 4.3600 0.99 2878 150 0.1991 0.2626 REMARK 3 2 4.3600 - 3.4600 1.00 2828 143 0.1917 0.2294 REMARK 3 3 3.4600 - 3.0300 1.00 2801 142 0.2288 0.2803 REMARK 3 4 3.0300 - 2.7500 1.00 2782 160 0.2784 0.3079 REMARK 3 5 2.7500 - 2.5500 1.00 2756 148 0.3012 0.3374 REMARK 3 6 2.5500 - 2.4000 0.97 2734 143 0.3109 0.3558 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4530 4.9761 -4.3705 REMARK 3 T TENSOR REMARK 3 T11: 0.9835 T22: 1.4817 REMARK 3 T33: 1.3202 T12: 0.1712 REMARK 3 T13: -0.0112 T23: 0.5546 REMARK 3 L TENSOR REMARK 3 L11: 0.1572 L22: 8.9815 REMARK 3 L33: 1.0618 L12: -1.0723 REMARK 3 L13: -0.4208 L23: 2.8887 REMARK 3 S TENSOR REMARK 3 S11: -0.4010 S12: 0.5656 S13: 0.1333 REMARK 3 S21: 0.6154 S22: 0.3697 S23: -1.1728 REMARK 3 S31: 0.7341 S32: 1.0680 S33: -0.0107 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7372 11.3000 -3.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.7039 T22: 1.0893 REMARK 3 T33: 0.9711 T12: 0.0613 REMARK 3 T13: 0.0155 T23: 0.2315 REMARK 3 L TENSOR REMARK 3 L11: 3.6142 L22: 7.7305 REMARK 3 L33: 7.6770 L12: -1.8829 REMARK 3 L13: 3.5096 L23: -5.3032 REMARK 3 S TENSOR REMARK 3 S11: 0.2206 S12: 0.5141 S13: 0.5521 REMARK 3 S21: 0.1997 S22: -1.3729 S23: -1.0701 REMARK 3 S31: -0.1479 S32: 1.8201 S33: 1.0871 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.4342 20.8532 -11.4966 REMARK 3 T TENSOR REMARK 3 T11: 1.0708 T22: 0.8090 REMARK 3 T33: 0.8343 T12: -0.0025 REMARK 3 T13: -0.0989 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: 5.7527 L22: 7.7044 REMARK 3 L33: 5.5862 L12: -1.7285 REMARK 3 L13: 1.6894 L23: -3.6787 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: 0.5146 S13: 0.0290 REMARK 3 S21: 0.4816 S22: -0.4809 S23: -0.6239 REMARK 3 S31: -1.0309 S32: 0.8059 S33: 0.4032 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 18 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.9797 7.2864 0.0172 REMARK 3 T TENSOR REMARK 3 T11: 0.5391 T22: 0.6074 REMARK 3 T33: 0.6150 T12: 0.0031 REMARK 3 T13: -0.0102 T23: 0.1507 REMARK 3 L TENSOR REMARK 3 L11: 4.6675 L22: 3.8253 REMARK 3 L33: 7.1293 L12: 1.7401 REMARK 3 L13: 5.7432 L23: 1.7451 REMARK 3 S TENSOR REMARK 3 S11: -0.4301 S12: 1.3190 S13: 1.0779 REMARK 3 S21: -0.4019 S22: -0.3994 S23: 0.3555 REMARK 3 S31: -0.9441 S32: 1.9745 S33: 0.8023 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 26 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.7332 -1.4646 18.5407 REMARK 3 T TENSOR REMARK 3 T11: 0.7661 T22: 0.4179 REMARK 3 T33: 0.6162 T12: 0.0002 REMARK 3 T13: 0.1154 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 9.1740 L22: 2.3446 REMARK 3 L33: 2.7309 L12: 1.2513 REMARK 3 L13: -1.0208 L23: -0.9176 REMARK 3 S TENSOR REMARK 3 S11: -0.4129 S12: -0.9194 S13: -1.0394 REMARK 3 S21: 0.7944 S22: -0.2495 S23: -0.4999 REMARK 3 S31: 1.3319 S32: -0.0838 S33: 0.7534 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.1170 22.8802 18.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.3993 T22: 0.3182 REMARK 3 T33: 0.3536 T12: 0.0208 REMARK 3 T13: 0.0207 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 2.6527 L22: 8.8619 REMARK 3 L33: 1.7277 L12: 2.9860 REMARK 3 L13: 0.5749 L23: -0.1449 REMARK 3 S TENSOR REMARK 3 S11: -0.2956 S12: 0.6825 S13: -0.0001 REMARK 3 S21: 0.0453 S22: 0.3478 S23: -0.9406 REMARK 3 S31: -0.0048 S32: 0.0582 S33: -0.0419 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.5738 -4.3191 20.4085 REMARK 3 T TENSOR REMARK 3 T11: 0.8542 T22: 0.4395 REMARK 3 T33: 0.5454 T12: -0.1836 REMARK 3 T13: 0.2094 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 1.6444 L22: 5.5179 REMARK 3 L33: 6.3808 L12: 0.2566 REMARK 3 L13: 2.7177 L23: 3.5922 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.3122 S13: -0.9228 REMARK 3 S21: 1.1882 S22: -0.3713 S23: 2.2279 REMARK 3 S31: 1.8306 S32: -1.2808 S33: 0.3483 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.1543 23.0414 17.9409 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.2437 REMARK 3 T33: 0.2498 T12: 0.0110 REMARK 3 T13: 0.0538 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.7350 L22: 8.7740 REMARK 3 L33: 1.6073 L12: 0.0736 REMARK 3 L13: 0.4647 L23: 0.6188 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.1109 S13: 0.1079 REMARK 3 S21: 0.4271 S22: -0.1711 S23: 0.3372 REMARK 3 S31: -0.0598 S32: -0.1513 S33: 0.0921 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -64.2498 17.0782 8.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.3518 T22: 0.3215 REMARK 3 T33: 0.3001 T12: 0.0229 REMARK 3 T13: -0.0720 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 2.7085 L22: 3.6346 REMARK 3 L33: 4.5241 L12: -0.8251 REMARK 3 L13: -2.0870 L23: 3.1375 REMARK 3 S TENSOR REMARK 3 S11: 0.3358 S12: 0.1624 S13: 0.3795 REMARK 3 S21: -1.0838 S22: -0.5395 S23: 1.0911 REMARK 3 S31: -0.3125 S32: -0.5304 S33: 0.1293 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.0816 16.9152 11.0316 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1939 REMARK 3 T33: 0.2237 T12: 0.0149 REMARK 3 T13: 0.0047 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.0340 L22: 7.2994 REMARK 3 L33: 0.9875 L12: 2.3214 REMARK 3 L13: 0.4569 L23: 0.7910 REMARK 3 S TENSOR REMARK 3 S11: -0.1304 S12: 0.1417 S13: 0.2669 REMARK 3 S21: -0.3204 S22: 0.0772 S23: 0.2007 REMARK 3 S31: 0.0686 S32: 0.0300 S33: 0.0754 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.3625 14.6317 14.8722 REMARK 3 T TENSOR REMARK 3 T11: 0.2766 T22: 0.2319 REMARK 3 T33: 0.2549 T12: 0.0018 REMARK 3 T13: -0.0072 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 4.7102 L22: 8.0795 REMARK 3 L33: 6.3299 L12: 3.0215 REMARK 3 L13: -2.6940 L23: -2.3869 REMARK 3 S TENSOR REMARK 3 S11: -0.2144 S12: -0.0277 S13: -0.5446 REMARK 3 S21: 0.2850 S22: -0.3061 S23: -0.7913 REMARK 3 S31: 0.2008 S32: 0.1349 S33: 0.6844 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.8189 33.2077 15.6861 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.3663 REMARK 3 T33: 0.3995 T12: -0.0694 REMARK 3 T13: -0.0602 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: -0.0598 L22: 7.9509 REMARK 3 L33: 4.6277 L12: 0.2682 REMARK 3 L13: -0.3463 L23: -5.1694 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0744 S13: 0.1163 REMARK 3 S21: 0.6335 S22: -0.3311 S23: -0.6180 REMARK 3 S31: -0.5387 S32: 0.3178 S33: 0.2749 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.8181 10.0603 -5.1142 REMARK 3 T TENSOR REMARK 3 T11: 0.6852 T22: 0.7667 REMARK 3 T33: 0.7326 T12: 0.0125 REMARK 3 T13: -0.0025 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 6.5019 L22: 9.3927 REMARK 3 L33: 7.6779 L12: -3.8362 REMARK 3 L13: -0.5698 L23: -1.3229 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: -0.6487 S13: -0.0609 REMARK 3 S21: 1.8120 S22: 0.1692 S23: 1.0808 REMARK 3 S31: 0.1662 S32: -0.0739 S33: 0.1423 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8452 2.5269 -7.0365 REMARK 3 T TENSOR REMARK 3 T11: 0.9732 T22: 1.1737 REMARK 3 T33: 1.0828 T12: 0.1621 REMARK 3 T13: 0.0044 T23: 0.2905 REMARK 3 L TENSOR REMARK 3 L11: 1.4703 L22: 7.2714 REMARK 3 L33: 1.0715 L12: -2.9038 REMARK 3 L13: 1.0817 L23: -1.9314 REMARK 3 S TENSOR REMARK 3 S11: 0.6146 S12: 0.0333 S13: -0.2774 REMARK 3 S21: -0.0141 S22: -0.6445 S23: -0.2694 REMARK 3 S31: 0.8435 S32: 0.2880 S33: -0.0730 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.2576 11.0742 -12.1537 REMARK 3 T TENSOR REMARK 3 T11: 0.7537 T22: 0.8577 REMARK 3 T33: 1.1576 T12: 0.1887 REMARK 3 T13: 0.0445 T23: 0.1216 REMARK 3 L TENSOR REMARK 3 L11: 1.8664 L22: 6.1031 REMARK 3 L33: 2.0904 L12: 0.0520 REMARK 3 L13: 0.0634 L23: -2.3431 REMARK 3 S TENSOR REMARK 3 S11: -0.9234 S12: -0.6008 S13: -0.2396 REMARK 3 S21: 0.0284 S22: 0.4041 S23: 2.1917 REMARK 3 S31: -0.4313 S32: -0.2065 S33: 0.5381 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3507 13.4153 -12.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.8421 T22: 1.3617 REMARK 3 T33: 1.2326 T12: -0.0094 REMARK 3 T13: 0.0835 T23: 0.4288 REMARK 3 L TENSOR REMARK 3 L11: 3.1630 L22: 1.2937 REMARK 3 L33: 1.8293 L12: 1.9222 REMARK 3 L13: 2.3665 L23: 1.4705 REMARK 3 S TENSOR REMARK 3 S11: 0.1397 S12: 0.4789 S13: -0.8452 REMARK 3 S21: -0.1218 S22: -0.3303 S23: -0.7254 REMARK 3 S31: 0.8034 S32: -0.1244 S33: 0.4923 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9908 3.8372 -4.3245 REMARK 3 T TENSOR REMARK 3 T11: 1.2400 T22: 1.6216 REMARK 3 T33: 1.5801 T12: 0.4102 REMARK 3 T13: -0.2144 T23: 0.5494 REMARK 3 L TENSOR REMARK 3 L11: 1.1840 L22: 7.5267 REMARK 3 L33: 2.8522 L12: -2.3479 REMARK 3 L13: 0.4006 L23: -1.4301 REMARK 3 S TENSOR REMARK 3 S11: 0.5318 S12: 0.3102 S13: -1.0987 REMARK 3 S21: -0.3818 S22: 0.3677 S23: -0.2014 REMARK 3 S31: 1.2468 S32: 0.7689 S33: -0.4335 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8509 9.0920 -15.4766 REMARK 3 T TENSOR REMARK 3 T11: 1.2000 T22: 1.5137 REMARK 3 T33: 1.0638 T12: 0.2413 REMARK 3 T13: -0.1671 T23: 0.3493 REMARK 3 L TENSOR REMARK 3 L11: 5.7422 L22: 9.9806 REMARK 3 L33: 2.2981 L12: 1.2946 REMARK 3 L13: 3.5507 L23: 1.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.5524 S12: 0.0934 S13: -0.8757 REMARK 3 S21: 1.5829 S22: 0.8402 S23: -0.8659 REMARK 3 S31: 1.3158 S32: 1.2551 S33: -1.4726 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 5D7E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 4000, 0.2M LITHIUM REMARK 280 SULFATE, 0.1M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.47200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.23600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.23600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.47200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 1 REMARK 465 ASP B 2 REMARK 465 HIS B 3 REMARK 465 ILE B 17 REMARK 465 ILE B 18 REMARK 465 PRO B 19 REMARK 465 GLU B 20 REMARK 465 GLN B 21 REMARK 465 ASN B 22 REMARK 465 ILE B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 ASN B 26 REMARK 465 GLU B 27 REMARK 465 LEU B 28 REMARK 465 PRO B 29 REMARK 465 LEU B 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 123 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 65 72.97 44.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 64 GLN A 65 -148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 415 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 416 DISTANCE = 6.88 ANGSTROMS DBREF 7F5M A 2 139 UNP Q99314 SAS5_YEAST 2 139 DBREF 7F5M B 2 139 UNP Q99314 SAS5_YEAST 2 139 DBREF 7F5M C 18 37 PDB 7F5M 7F5M 18 37 SEQADV 7F5M SER A 1 UNP Q99314 EXPRESSION TAG SEQADV 7F5M SER B 1 UNP Q99314 EXPRESSION TAG SEQRES 1 A 139 SER ASP HIS SER ILE GLU VAL THR PHE ARG VAL LYS THR SEQRES 2 A 139 GLN GLN VAL ILE ILE PRO GLU GLN ASN ILE ARG GLY ASN SEQRES 3 A 139 GLU LEU PRO LEU ARG ARG TRP GLN MET GLU LEU LEU MET SEQRES 4 A 139 LEU ASP ALA THR GLY LYS GLU VAL GLU PRO THR ILE LEU SEQRES 5 A 139 SER LYS CYS ILE TYR HIS LEU HIS SER SER PHE LYS GLN SEQRES 6 A 139 PRO LYS ARG ARG LEU ASN SER LEU PRO PHE PHE ILE LYS SEQRES 7 A 139 GLU THR GLY TRP GLY GLU PHE ASN LEU LYS ILE GLU CYS SEQRES 8 A 139 PHE PHE ILE GLY ASN ALA GLY LYS PHE SER ILE GLU HIS SEQRES 9 A 139 ASP LEU THR PHE GLU ASP ASP ALA TYR ALA VAL ASP TYR SEQRES 10 A 139 THR VAL ASP VAL PRO HIS GLU PHE SER HIS LEU ASN SER SEQRES 11 A 139 GLU LEU SER LYS TYR PHE ASP LEU PRO SEQRES 1 B 139 SER ASP HIS SER ILE GLU VAL THR PHE ARG VAL LYS THR SEQRES 2 B 139 GLN GLN VAL ILE ILE PRO GLU GLN ASN ILE ARG GLY ASN SEQRES 3 B 139 GLU LEU PRO LEU ARG ARG TRP GLN MET GLU LEU LEU MET SEQRES 4 B 139 LEU ASP ALA THR GLY LYS GLU VAL GLU PRO THR ILE LEU SEQRES 5 B 139 SER LYS CYS ILE TYR HIS LEU HIS SER SER PHE LYS GLN SEQRES 6 B 139 PRO LYS ARG ARG LEU ASN SER LEU PRO PHE PHE ILE LYS SEQRES 7 B 139 GLU THR GLY TRP GLY GLU PHE ASN LEU LYS ILE GLU CYS SEQRES 8 B 139 PHE PHE ILE GLY ASN ALA GLY LYS PHE SER ILE GLU HIS SEQRES 9 B 139 ASP LEU THR PHE GLU ASP ASP ALA TYR ALA VAL ASP TYR SEQRES 10 B 139 THR VAL ASP VAL PRO HIS GLU PHE SER HIS LEU ASN SER SEQRES 11 B 139 GLU LEU SER LYS TYR PHE ASP LEU PRO SEQRES 1 C 20 LYS GLN LEU ALA SER LYS ALA ALA ARG LBZ SER ALA PRO SEQRES 2 C 20 SER THR GLY GLY VAL LYS TYR HET LBZ C 27 17 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL B 301 6 HET GOL B 302 6 HETNAM LBZ (2~{S})-2-AZANYL-6-BENZAMIDO-HEXANOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 LBZ C13 H18 N2 O3 FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 HOH *95(H2 O) HELIX 1 AA1 GLY A 95 ALA A 97 5 3 HELIX 2 AA2 PHE A 125 SER A 133 1 9 HELIX 3 AA3 PHE B 125 LYS B 134 1 10 HELIX 4 AA4 ALA C 21 ARG C 26 1 6 SHEET 1 AA1 3 GLU A 46 VAL A 47 0 SHEET 2 AA1 3 ARG A 31 LEU A 40 -1 N MET A 39 O VAL A 47 SHEET 3 AA1 3 PHE A 76 GLY A 81 -1 O GLY A 81 N ARG A 31 SHEET 1 AA2 4 GLU A 46 VAL A 47 0 SHEET 2 AA2 4 ARG A 31 LEU A 40 -1 N MET A 39 O VAL A 47 SHEET 3 AA2 4 SER A 4 ILE A 17 -1 N ARG A 10 O LEU A 38 SHEET 4 AA2 4 ALA A 112 PRO A 122 -1 O VAL A 121 N ILE A 5 SHEET 1 AA3 4 LYS A 67 LEU A 70 0 SHEET 2 AA3 4 LEU A 52 HIS A 58 -1 N CYS A 55 O LEU A 70 SHEET 3 AA3 4 PHE A 85 PHE A 93 -1 O PHE A 92 N LYS A 54 SHEET 4 AA3 4 LYS A 99 LEU A 106 -1 O PHE A 100 N CYS A 91 SHEET 1 AA4 3 GLU B 46 VAL B 47 0 SHEET 2 AA4 3 ARG B 32 LEU B 40 -1 N MET B 39 O VAL B 47 SHEET 3 AA4 3 PHE B 76 THR B 80 -1 O ILE B 77 N MET B 35 SHEET 1 AA5 4 GLU B 46 VAL B 47 0 SHEET 2 AA5 4 ARG B 32 LEU B 40 -1 N MET B 39 O VAL B 47 SHEET 3 AA5 4 ILE B 5 GLN B 14 -1 N ARG B 10 O LEU B 38 SHEET 4 AA5 4 ALA B 112 VAL B 121 -1 O TYR B 117 N PHE B 9 SHEET 1 AA6 4 LYS B 67 LEU B 70 0 SHEET 2 AA6 4 LEU B 52 HIS B 58 -1 N TYR B 57 O ARG B 68 SHEET 3 AA6 4 ASN B 86 PHE B 93 -1 O LYS B 88 N HIS B 58 SHEET 4 AA6 4 LYS B 99 ASP B 105 -1 O HIS B 104 N LEU B 87 LINK C ARG C 26 N LBZ C 27 1555 1555 1.33 LINK C LBZ C 27 N SER C 28 1555 1555 1.33 CISPEP 1 LEU A 73 PRO A 74 0 -3.27 CISPEP 2 LEU B 73 PRO B 74 0 -7.70 CRYST1 126.578 126.578 48.708 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007900 0.004561 0.000000 0.00000 SCALE2 0.000000 0.009122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020531 0.00000