HEADER HYDROLASE 22-JUN-21 7F5N TITLE CRYSTAL STRUCTURE OF TCPTP CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: T-CELL PROTEIN-TYROSINE PHOSPHATASE,TCPTP; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN2, PTPT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN TYROSINE PHOSPHATASE, TCPTP, PTPN2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.SINGH,M.-J.LIN,S.-F.HSU,C.-C.LEE,T.-C.MENG REVDAT 3 29-NOV-23 7F5N 1 REMARK REVDAT 2 16-FEB-22 7F5N 1 JRNL REVDAT 1 29-DEC-21 7F5N 0 JRNL AUTH J.P.SINGH,M.J.LIN,S.F.HSU,W.PETI,C.C.LEE,T.C.MENG JRNL TITL CRYSTAL STRUCTURE OF TCPTP UNRAVELS AN ALLOSTERIC REGULATORY JRNL TITL 2 ROLE OF HELIX ALPHA 7 IN PHOSPHATASE ACTIVITY. JRNL REF BIOCHEMISTRY V. 60 3856 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 34910875 JRNL DOI 10.1021/ACS.BIOCHEM.1C00519 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 62827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.966 REMARK 3 FREE R VALUE TEST SET COUNT : 3120 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7191 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15300 REMARK 3 B22 (A**2) : -0.06400 REMARK 3 B33 (A**2) : 0.08700 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.07200 REMARK 3 B23 (A**2) : 0.01700 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.572 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7360 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6700 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9955 ; 1.616 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15577 ; 1.353 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 867 ; 6.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 435 ;33.822 ;22.069 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1317 ;18.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;21.100 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 934 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8149 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1446 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 109 ; 0.276 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3538 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 342 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3489 ; 2.202 ; 2.434 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3488 ; 2.200 ; 2.433 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4349 ; 3.296 ; 3.628 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4350 ; 3.296 ; 3.630 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3871 ; 2.649 ; 2.780 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3872 ; 2.648 ; 2.782 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5606 ; 4.225 ; 4.027 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5607 ; 4.224 ; 4.028 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7F5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 107 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.01700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1L8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M AMMONIUM NITRATE, 0.1 M MES (PH REMARK 280 -6.0), 20% V/V PEG SMEAR MEDIUM, 5% V/V ETHYLENE GLYCOL AND 5.5 REMARK 280 MM LYSINE DIPEPTIDE ADDITIVE, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 279 REMARK 465 LYS A 280 REMARK 465 GLY A 281 REMARK 465 ASP A 282 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 ALA A 300 REMARK 465 PHE A 301 REMARK 465 ASP A 302 REMARK 465 HIS A 303 REMARK 465 SER A 304 REMARK 465 PRO A 305 REMARK 465 ASN A 306 REMARK 465 LYS A 307 REMARK 465 ILE A 308 REMARK 465 MET A 309 REMARK 465 THR A 310 REMARK 465 GLU A 311 REMARK 465 LYS A 312 REMARK 465 TYR A 313 REMARK 465 ASN A 314 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 CYS B 278 REMARK 465 ILE B 279 REMARK 465 LYS B 280 REMARK 465 GLY B 281 REMARK 465 ASP B 282 REMARK 465 SER B 283 REMARK 465 SER B 284 REMARK 465 ILE B 285 REMARK 465 SER B 298 REMARK 465 PRO B 299 REMARK 465 ALA B 300 REMARK 465 PHE B 301 REMARK 465 ASP B 302 REMARK 465 HIS B 303 REMARK 465 SER B 304 REMARK 465 PRO B 305 REMARK 465 ASN B 306 REMARK 465 LYS B 307 REMARK 465 ILE B 308 REMARK 465 MET B 309 REMARK 465 THR B 310 REMARK 465 GLU B 311 REMARK 465 LYS B 312 REMARK 465 TYR B 313 REMARK 465 ASN B 314 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 GLY C 239 REMARK 465 ASP C 240 REMARK 465 ASP C 282 REMARK 465 SER C 283 REMARK 465 SER C 284 REMARK 465 SER C 298 REMARK 465 PRO C 299 REMARK 465 ALA C 300 REMARK 465 PHE C 301 REMARK 465 ASP C 302 REMARK 465 HIS C 303 REMARK 465 SER C 304 REMARK 465 PRO C 305 REMARK 465 ASN C 306 REMARK 465 LYS C 307 REMARK 465 ILE C 308 REMARK 465 MET C 309 REMARK 465 THR C 310 REMARK 465 GLU C 311 REMARK 465 LYS C 312 REMARK 465 TYR C 313 REMARK 465 ASN C 314 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 148 O HOH B 401 1.99 REMARK 500 O HOH A 508 O HOH A 558 2.06 REMARK 500 O HOH A 549 O HOH C 510 2.10 REMARK 500 O ASP A 240 O HOH A 401 2.11 REMARK 500 O HOH A 494 O HOH A 545 2.12 REMARK 500 O HOH C 522 O HOH C 523 2.15 REMARK 500 O HOH C 448 O HOH C 547 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 509 O HOH B 479 1445 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 118 57.02 39.45 REMARK 500 ASP A 130 -156.49 -111.37 REMARK 500 PHE A 136 76.44 -116.38 REMARK 500 CYS A 216 -131.74 -135.97 REMARK 500 SER A 217 -71.13 -71.89 REMARK 500 ILE A 220 -35.38 -136.01 REMARK 500 ILE A 259 113.44 77.30 REMARK 500 HIS B 34 51.92 -142.42 REMARK 500 CYS B 123 135.86 -172.93 REMARK 500 ASP B 130 -150.71 -125.69 REMARK 500 CYS B 216 -134.71 -119.32 REMARK 500 ILE B 220 -37.12 -131.67 REMARK 500 LYS B 238 -75.58 -57.97 REMARK 500 ASP B 240 -75.33 -133.01 REMARK 500 ILE B 259 114.12 73.84 REMARK 500 HIS C 34 49.42 -141.43 REMARK 500 CYS C 123 137.00 -171.19 REMARK 500 ASP C 130 -156.33 -128.07 REMARK 500 CYS C 216 -135.76 -135.21 REMARK 500 ILE C 220 -37.73 -134.80 REMARK 500 GLU C 237 -64.66 -26.00 REMARK 500 ILE C 259 111.66 74.79 REMARK 500 LYS C 280 72.37 61.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 562 DISTANCE = 5.96 ANGSTROMS DBREF 7F5N A 1 314 UNP P17706 PTN2_HUMAN 1 314 DBREF 7F5N B 1 314 UNP P17706 PTN2_HUMAN 1 314 DBREF 7F5N C 1 314 UNP P17706 PTN2_HUMAN 1 314 SEQADV 7F5N SER A -2 UNP P17706 EXPRESSION TAG SEQADV 7F5N ASN A -1 UNP P17706 EXPRESSION TAG SEQADV 7F5N ALA A 0 UNP P17706 EXPRESSION TAG SEQADV 7F5N SER B -2 UNP P17706 EXPRESSION TAG SEQADV 7F5N ASN B -1 UNP P17706 EXPRESSION TAG SEQADV 7F5N ALA B 0 UNP P17706 EXPRESSION TAG SEQADV 7F5N SER C -2 UNP P17706 EXPRESSION TAG SEQADV 7F5N ASN C -1 UNP P17706 EXPRESSION TAG SEQADV 7F5N ALA C 0 UNP P17706 EXPRESSION TAG SEQRES 1 A 317 SER ASN ALA MET PRO THR THR ILE GLU ARG GLU PHE GLU SEQRES 2 A 317 GLU LEU ASP THR GLN ARG ARG TRP GLN PRO LEU TYR LEU SEQRES 3 A 317 GLU ILE ARG ASN GLU SER HIS ASP TYR PRO HIS ARG VAL SEQRES 4 A 317 ALA LYS PHE PRO GLU ASN ARG ASN ARG ASN ARG TYR ARG SEQRES 5 A 317 ASP VAL SER PRO TYR ASP HIS SER ARG VAL LYS LEU GLN SEQRES 6 A 317 ASN ALA GLU ASN ASP TYR ILE ASN ALA SER LEU VAL ASP SEQRES 7 A 317 ILE GLU GLU ALA GLN ARG SER TYR ILE LEU THR GLN GLY SEQRES 8 A 317 PRO LEU PRO ASN THR CYS CYS HIS PHE TRP LEU MET VAL SEQRES 9 A 317 TRP GLN GLN LYS THR LYS ALA VAL VAL MET LEU ASN ARG SEQRES 10 A 317 ILE VAL GLU LYS GLU SER VAL LYS CYS ALA GLN TYR TRP SEQRES 11 A 317 PRO THR ASP ASP GLN GLU MET LEU PHE LYS GLU THR GLY SEQRES 12 A 317 PHE SER VAL LYS LEU LEU SER GLU ASP VAL LYS SER TYR SEQRES 13 A 317 TYR THR VAL HIS LEU LEU GLN LEU GLU ASN ILE ASN SER SEQRES 14 A 317 GLY GLU THR ARG THR ILE SER HIS PHE HIS TYR THR THR SEQRES 15 A 317 TRP PRO ASP PHE GLY VAL PRO GLU SER PRO ALA SER PHE SEQRES 16 A 317 LEU ASN PHE LEU PHE LYS VAL ARG GLU SER GLY SER LEU SEQRES 17 A 317 ASN PRO ASP HIS GLY PRO ALA VAL ILE HIS CYS SER ALA SEQRES 18 A 317 GLY ILE GLY ARG SER GLY THR PHE SER LEU VAL ASP THR SEQRES 19 A 317 CYS LEU VAL LEU MET GLU LYS GLY ASP ASP ILE ASN ILE SEQRES 20 A 317 LYS GLN VAL LEU LEU ASN MET ARG LYS TYR ARG MET GLY SEQRES 21 A 317 LEU ILE GLN THR PRO ASP GLN LEU ARG PHE SER TYR MET SEQRES 22 A 317 ALA ILE ILE GLU GLY ALA LYS CYS ILE LYS GLY ASP SER SEQRES 23 A 317 SER ILE GLN LYS ARG TRP LYS GLU LEU SER LYS GLU ASP SEQRES 24 A 317 LEU SER PRO ALA PHE ASP HIS SER PRO ASN LYS ILE MET SEQRES 25 A 317 THR GLU LYS TYR ASN SEQRES 1 B 317 SER ASN ALA MET PRO THR THR ILE GLU ARG GLU PHE GLU SEQRES 2 B 317 GLU LEU ASP THR GLN ARG ARG TRP GLN PRO LEU TYR LEU SEQRES 3 B 317 GLU ILE ARG ASN GLU SER HIS ASP TYR PRO HIS ARG VAL SEQRES 4 B 317 ALA LYS PHE PRO GLU ASN ARG ASN ARG ASN ARG TYR ARG SEQRES 5 B 317 ASP VAL SER PRO TYR ASP HIS SER ARG VAL LYS LEU GLN SEQRES 6 B 317 ASN ALA GLU ASN ASP TYR ILE ASN ALA SER LEU VAL ASP SEQRES 7 B 317 ILE GLU GLU ALA GLN ARG SER TYR ILE LEU THR GLN GLY SEQRES 8 B 317 PRO LEU PRO ASN THR CYS CYS HIS PHE TRP LEU MET VAL SEQRES 9 B 317 TRP GLN GLN LYS THR LYS ALA VAL VAL MET LEU ASN ARG SEQRES 10 B 317 ILE VAL GLU LYS GLU SER VAL LYS CYS ALA GLN TYR TRP SEQRES 11 B 317 PRO THR ASP ASP GLN GLU MET LEU PHE LYS GLU THR GLY SEQRES 12 B 317 PHE SER VAL LYS LEU LEU SER GLU ASP VAL LYS SER TYR SEQRES 13 B 317 TYR THR VAL HIS LEU LEU GLN LEU GLU ASN ILE ASN SER SEQRES 14 B 317 GLY GLU THR ARG THR ILE SER HIS PHE HIS TYR THR THR SEQRES 15 B 317 TRP PRO ASP PHE GLY VAL PRO GLU SER PRO ALA SER PHE SEQRES 16 B 317 LEU ASN PHE LEU PHE LYS VAL ARG GLU SER GLY SER LEU SEQRES 17 B 317 ASN PRO ASP HIS GLY PRO ALA VAL ILE HIS CYS SER ALA SEQRES 18 B 317 GLY ILE GLY ARG SER GLY THR PHE SER LEU VAL ASP THR SEQRES 19 B 317 CYS LEU VAL LEU MET GLU LYS GLY ASP ASP ILE ASN ILE SEQRES 20 B 317 LYS GLN VAL LEU LEU ASN MET ARG LYS TYR ARG MET GLY SEQRES 21 B 317 LEU ILE GLN THR PRO ASP GLN LEU ARG PHE SER TYR MET SEQRES 22 B 317 ALA ILE ILE GLU GLY ALA LYS CYS ILE LYS GLY ASP SER SEQRES 23 B 317 SER ILE GLN LYS ARG TRP LYS GLU LEU SER LYS GLU ASP SEQRES 24 B 317 LEU SER PRO ALA PHE ASP HIS SER PRO ASN LYS ILE MET SEQRES 25 B 317 THR GLU LYS TYR ASN SEQRES 1 C 317 SER ASN ALA MET PRO THR THR ILE GLU ARG GLU PHE GLU SEQRES 2 C 317 GLU LEU ASP THR GLN ARG ARG TRP GLN PRO LEU TYR LEU SEQRES 3 C 317 GLU ILE ARG ASN GLU SER HIS ASP TYR PRO HIS ARG VAL SEQRES 4 C 317 ALA LYS PHE PRO GLU ASN ARG ASN ARG ASN ARG TYR ARG SEQRES 5 C 317 ASP VAL SER PRO TYR ASP HIS SER ARG VAL LYS LEU GLN SEQRES 6 C 317 ASN ALA GLU ASN ASP TYR ILE ASN ALA SER LEU VAL ASP SEQRES 7 C 317 ILE GLU GLU ALA GLN ARG SER TYR ILE LEU THR GLN GLY SEQRES 8 C 317 PRO LEU PRO ASN THR CYS CYS HIS PHE TRP LEU MET VAL SEQRES 9 C 317 TRP GLN GLN LYS THR LYS ALA VAL VAL MET LEU ASN ARG SEQRES 10 C 317 ILE VAL GLU LYS GLU SER VAL LYS CYS ALA GLN TYR TRP SEQRES 11 C 317 PRO THR ASP ASP GLN GLU MET LEU PHE LYS GLU THR GLY SEQRES 12 C 317 PHE SER VAL LYS LEU LEU SER GLU ASP VAL LYS SER TYR SEQRES 13 C 317 TYR THR VAL HIS LEU LEU GLN LEU GLU ASN ILE ASN SER SEQRES 14 C 317 GLY GLU THR ARG THR ILE SER HIS PHE HIS TYR THR THR SEQRES 15 C 317 TRP PRO ASP PHE GLY VAL PRO GLU SER PRO ALA SER PHE SEQRES 16 C 317 LEU ASN PHE LEU PHE LYS VAL ARG GLU SER GLY SER LEU SEQRES 17 C 317 ASN PRO ASP HIS GLY PRO ALA VAL ILE HIS CYS SER ALA SEQRES 18 C 317 GLY ILE GLY ARG SER GLY THR PHE SER LEU VAL ASP THR SEQRES 19 C 317 CYS LEU VAL LEU MET GLU LYS GLY ASP ASP ILE ASN ILE SEQRES 20 C 317 LYS GLN VAL LEU LEU ASN MET ARG LYS TYR ARG MET GLY SEQRES 21 C 317 LEU ILE GLN THR PRO ASP GLN LEU ARG PHE SER TYR MET SEQRES 22 C 317 ALA ILE ILE GLU GLY ALA LYS CYS ILE LYS GLY ASP SER SEQRES 23 C 317 SER ILE GLN LYS ARG TRP LYS GLU LEU SER LYS GLU ASP SEQRES 24 C 317 LEU SER PRO ALA PHE ASP HIS SER PRO ASN LYS ILE MET SEQRES 25 C 317 THR GLU LYS TYR ASN FORMUL 4 HOH *410(H2 O) HELIX 1 AA1 THR A 3 GLN A 15 1 13 HELIX 2 AA2 ARG A 17 SER A 29 1 13 HELIX 3 AA3 HIS A 34 PHE A 39 1 6 HELIX 4 AA4 PRO A 40 ASN A 46 5 7 HELIX 5 AA5 GLU A 77 GLN A 80 5 4 HELIX 6 AA6 THR A 93 LYS A 105 1 13 HELIX 7 AA7 SER A 188 SER A 202 1 15 HELIX 8 AA8 GLY A 221 LYS A 238 1 18 HELIX 9 AA9 ASN A 243 ARG A 252 1 10 HELIX 10 AB1 THR A 261 ALA A 276 1 16 HELIX 11 AB2 SER A 284 LYS A 294 1 11 HELIX 12 AB3 THR B 4 GLN B 15 1 12 HELIX 13 AB4 ARG B 17 SER B 29 1 13 HELIX 14 AB5 ARG B 35 ASN B 46 5 12 HELIX 15 AB6 TYR B 54 HIS B 56 5 3 HELIX 16 AB7 GLU B 77 GLN B 80 5 4 HELIX 17 AB8 THR B 93 GLN B 104 1 12 HELIX 18 AB9 SER B 188 SER B 202 1 15 HELIX 19 AC1 GLY B 221 GLY B 239 1 19 HELIX 20 AC2 ASN B 243 LYS B 253 1 11 HELIX 21 AC3 THR B 261 ALA B 276 1 16 HELIX 22 AC4 LYS B 287 SER B 293 1 7 HELIX 23 AC5 THR C 3 GLN C 15 1 13 HELIX 24 AC6 ARG C 17 SER C 29 1 13 HELIX 25 AC7 ARG C 35 ASN C 46 5 12 HELIX 26 AC8 GLU C 77 GLN C 80 5 4 HELIX 27 AC9 THR C 93 GLN C 104 1 12 HELIX 28 AD1 SER C 188 SER C 202 1 15 HELIX 29 AD2 ILE C 220 LYS C 238 1 19 HELIX 30 AD3 ASN C 243 LYS C 253 1 11 HELIX 31 AD4 THR C 261 ALA C 276 1 16 HELIX 32 AD5 LYS C 277 ILE C 279 5 3 HELIX 33 AD6 GLN C 286 LYS C 294 1 9 SHEET 1 AA1 9 ARG A 58 LYS A 60 0 SHEET 2 AA1 9 TYR A 68 ILE A 76 -1 O ALA A 71 N VAL A 59 SHEET 3 AA1 9 ARG A 81 THR A 86 -1 O TYR A 83 N VAL A 74 SHEET 4 AA1 9 ALA A 212 HIS A 215 1 O ILE A 214 N ILE A 84 SHEET 5 AA1 9 ALA A 108 MET A 111 1 N VAL A 110 O VAL A 213 SHEET 6 AA1 9 THR A 169 TYR A 177 1 O TYR A 177 N MET A 111 SHEET 7 AA1 9 TYR A 154 ASN A 163 -1 N HIS A 157 O HIS A 174 SHEET 8 AA1 9 PHE A 141 VAL A 150 -1 N LEU A 146 O LEU A 158 SHEET 9 AA1 9 MET A 134 PHE A 136 -1 N MET A 134 O VAL A 143 SHEET 1 AA2 2 VAL A 116 GLU A 117 0 SHEET 2 AA2 2 SER A 120 VAL A 121 -1 O SER A 120 N GLU A 117 SHEET 1 AA3 9 ARG B 58 LYS B 60 0 SHEET 2 AA3 9 TYR B 68 ILE B 76 -1 O ALA B 71 N VAL B 59 SHEET 3 AA3 9 ARG B 81 THR B 86 -1 O TYR B 83 N VAL B 74 SHEET 4 AA3 9 ALA B 212 HIS B 215 1 O ILE B 214 N ILE B 84 SHEET 5 AA3 9 ALA B 108 MET B 111 1 N VAL B 110 O VAL B 213 SHEET 6 AA3 9 THR B 169 TYR B 177 1 O PHE B 175 N VAL B 109 SHEET 7 AA3 9 TYR B 154 ASN B 163 -1 N HIS B 157 O HIS B 174 SHEET 8 AA3 9 PHE B 141 VAL B 150 -1 N SER B 142 O GLU B 162 SHEET 9 AA3 9 MET B 134 PHE B 136 -1 N PHE B 136 O PHE B 141 SHEET 1 AA4 2 VAL B 116 GLU B 117 0 SHEET 2 AA4 2 SER B 120 VAL B 121 -1 O SER B 120 N GLU B 117 SHEET 1 AA5 9 ARG C 58 LYS C 60 0 SHEET 2 AA5 9 TYR C 68 ILE C 76 -1 O ALA C 71 N VAL C 59 SHEET 3 AA5 9 ARG C 81 THR C 86 -1 O TYR C 83 N VAL C 74 SHEET 4 AA5 9 ALA C 212 HIS C 215 1 O ILE C 214 N ILE C 84 SHEET 5 AA5 9 ALA C 108 MET C 111 1 N VAL C 110 O VAL C 213 SHEET 6 AA5 9 THR C 169 TYR C 177 1 O SER C 173 N VAL C 109 SHEET 7 AA5 9 TYR C 154 ASN C 163 -1 N LEU C 159 O ILE C 172 SHEET 8 AA5 9 PHE C 141 VAL C 150 -1 N LEU C 146 O LEU C 158 SHEET 9 AA5 9 MET C 134 PHE C 136 -1 N MET C 134 O VAL C 143 SHEET 1 AA6 2 VAL C 116 GLU C 117 0 SHEET 2 AA6 2 SER C 120 VAL C 121 -1 O SER C 120 N GLU C 117 CRYST1 54.570 68.056 73.244 112.93 106.46 92.46 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018325 0.000787 0.006327 0.00000 SCALE2 0.000000 0.014707 0.006794 0.00000 SCALE3 0.000000 0.000000 0.015682 0.00000