HEADER TRANSPORT PROTEIN 25-JUN-21 7F6Q TITLE CRYSTAL STRUCTURE OF METAL-CITRATE-BINDING MUTANT (S79A) PROTEIN TITLE 2 (MCTA) OF ABC TRANSPORTER IN APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON ABC TRANSPORTER, PERIPLASMIC IRON-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN ATCC 27634 / DSM SOURCE 3 579 / HB8); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: ATCC 27634 / DSM 579 / HB8; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHB177; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS SUBSTRATE-BINDING PROTEIN, METAL ION, SECONDARY TRANSPORTER, KEYWDS 2 SYMPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,S.K.MANDAL REVDAT 3 29-NOV-23 7F6Q 1 REMARK REVDAT 2 02-MAR-22 7F6Q 1 JRNL REVDAT 1 01-DEC-21 7F6Q 0 JRNL AUTH S.K.MANDAL,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO A NOVEL MG 2+ JRNL TITL 2 -CITRATE-BINDING PROTEIN FROM THE ABC TRANSPORTER JRNL TITL 3 SUPERFAMILY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 1516 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 34866608 JRNL DOI 10.1107/S2059798321010457 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.K.MANDAL,S.P.KANAUJIA REMARK 1 TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO A NOVEL REMARK 1 TITL 2 MG2+-CITRATE-BINDING PROTEIN FROM THE ABC TRANSPORTER REMARK 1 TITL 3 SUPERFAMILY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 77 2021 REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI DOI.ORG/10.1107/S2059798321010457 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.63 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2665 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.52000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2829 ; 0.018 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2746 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3834 ; 2.218 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6294 ; 1.626 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 6.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;32.070 ;20.440 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;14.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3213 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 703 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4986 12.3535 3.8802 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0246 REMARK 3 T33: 0.0398 T12: -0.0203 REMARK 3 T13: 0.0222 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.5924 L22: 0.6945 REMARK 3 L33: 0.2497 L12: -0.1562 REMARK 3 L13: 0.2306 L23: 0.0503 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.0244 S13: -0.0413 REMARK 3 S21: -0.0346 S22: 0.0498 S23: -0.1194 REMARK 3 S31: -0.0282 S32: -0.0334 S33: -0.0210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7F6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300022985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.3.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 42.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7F6E REMARK 200 REMARK 200 REMARK: TRIGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M MES REMARK 280 MONOHYDRATE PH 6.5, 30% (W/V) PEG MONOMETHYL ETHER 5000, REMARK 280 MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.10000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.20000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.20000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 GLY A 339 REMARK 465 GLN A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 71 O HOH A 501 2.00 REMARK 500 O HOH A 721 O HOH A 770 2.06 REMARK 500 O HOH A 751 O HOH A 777 2.08 REMARK 500 OG SER A 89 O HOH A 502 2.13 REMARK 500 N GLN A 1 O HOH A 503 2.16 REMARK 500 O2 EDO A 410 O HOH A 504 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 2 C GLN A 2 O 0.127 REMARK 500 GLU A 13 CD GLU A 13 OE2 0.072 REMARK 500 GLU A 316 CD GLU A 316 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 129 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TYR A 196 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 LEU A 270 CB - CG - CD1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 286 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 49.47 -83.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 269 -11.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F6Q A 1 340 UNP Q53VZ2 Q53VZ2_THET8 19 358 SEQADV 7F6Q MET A -1 UNP Q53VZ2 INITIATING METHIONINE SEQADV 7F6Q MET A 0 UNP Q53VZ2 EXPRESSION TAG SEQADV 7F6Q ALA A 79 UNP Q53VZ2 SER 97 ENGINEERED MUTATION SEQRES 1 A 342 MET MET GLN GLN SER ARG PRO ALA SER ASP PRO GLN VAL SEQRES 2 A 342 VAL GLU ALA ALA ARG LYS GLU GLY ARG LEU ILE ILE TYR SEQRES 3 A 342 SER SER THR ASP GLN SER SER ALA GLN ALA LEU LEU ASP SEQRES 4 A 342 ASP PHE ARG LYS LEU TYR PRO PHE ILE GLN ILE GLU TYR SEQRES 5 A 342 ASN ASP LEU GLY THR GLN ALA ILE TYR ASP ARG PHE VAL SEQRES 6 A 342 SER GLU THR ALA ALA GLY ALA SER SER ALA ASP LEU LEU SEQRES 7 A 342 TRP SER ALA ALA MET GLU LEU GLN VAL LYS LEU ALA SER SEQRES 8 A 342 GLU GLY TYR ALA LEU PRO TYR ASP SER PRO GLU ALA LYS SEQRES 9 A 342 ASN TRP PRO ALA ASN ALA ARG LEU GLY ASN LEU ALA TYR SEQRES 10 A 342 SER THR THR LEU GLU PRO ALA VAL VAL VAL TYR ASN LYS SEQRES 11 A 342 ARG PHE LEU LYS PRO GLU GLU VAL PRO THR THR ARG GLU SEQRES 12 A 342 GLY LEU ALA ARG LEU LEU GLN GLU PRO ARG MET ARG GLY SEQRES 13 A 342 ARG VAL ALA THR TRP ASP PRO GLU ARG SER ALA VAL GLY SEQRES 14 A 342 PHE THR ILE LEU LYS ALA ASP TYR ASP ARG PHE PRO ALA SEQRES 15 A 342 PHE GLN GLU LEU ALA ARG ALA PHE GLY LYS ALA GLN ALA SEQRES 16 A 342 ALA LEU TYR SER SER THR GLY ALA ALA PHE GLU LYS VAL SEQRES 17 A 342 ILE SER GLY GLU HIS TYR LEU ALA TYR GLY PHE PHE GLY SEQRES 18 A 342 SER TYR ALA LEU LEU ARG GLN ARG THR VAL LYS ASP LEU SEQRES 19 A 342 GLY ILE ALA TYR LEU THR ASP GLY THR VAL ALA ILE GLN SEQRES 20 A 342 ARG VAL ALA PHE ILE ASN LYS ARG ALA ALA HIS PRO ASN SEQRES 21 A 342 ALA ALA LYS LEU PHE LEU ASP TYR LEU LEU SER LEU ARG SEQRES 22 A 342 GLY GLN ASN LEU MET ALA TYR THR ALA LEU ILE PHE ALA SEQRES 23 A 342 ARG ARG GLU THR VAL VAL GLY GLU ALA THR PRO GLN ALA SEQRES 24 A 342 LEU TYR LYS ALA VAL GLY GLY LYS ASP LYS VAL TYR ALA SEQRES 25 A 342 ILE PRO VAL SER THR GLU ILE LEU LYS ASN LEU ASP PRO SEQRES 26 A 342 ALA GLU ARG MET ARG PHE LEU THR PHE TRP ARG GLN ALA SEQRES 27 A 342 VAL ARG GLY GLN HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET SO2 A 405 3 HET CO2 A 406 3 HET ACT A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO A 411 4 HET PDO A 412 5 HET PDO A 413 5 HET PEG A 414 7 HETNAM CL CHLORIDE ION HETNAM SO2 SULFUR DIOXIDE HETNAM CO2 CARBON DIOXIDE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PDO 1,3-PROPANDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CL 4(CL 1-) FORMUL 6 SO2 O2 S FORMUL 7 CO2 C O2 FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 EDO 4(C2 H6 O2) FORMUL 13 PDO 2(C3 H8 O2) FORMUL 15 PEG C4 H10 O3 FORMUL 16 HOH *355(H2 O) HELIX 1 AA1 ASP A 8 GLY A 19 1 12 HELIX 2 AA2 ASP A 28 TYR A 43 1 16 HELIX 3 AA3 GLY A 54 ALA A 68 1 15 HELIX 4 AA4 ALA A 80 GLU A 90 1 11 HELIX 5 AA5 PRO A 105 ASN A 107 5 3 HELIX 6 AA6 LYS A 132 VAL A 136 5 5 HELIX 7 AA7 THR A 139 LEU A 147 1 9 HELIX 8 AA8 GLN A 148 ARG A 153 5 6 HELIX 9 AA9 SER A 164 PHE A 178 1 15 HELIX 10 AB1 PRO A 179 ALA A 191 1 13 HELIX 11 AB2 SER A 198 SER A 208 1 11 HELIX 12 AB3 GLY A 219 ARG A 227 1 9 HELIX 13 AB4 HIS A 256 SER A 269 1 14 HELIX 14 AB5 SER A 269 ALA A 280 1 12 HELIX 15 AB6 THR A 294 GLY A 303 1 10 HELIX 16 AB7 GLY A 304 ASP A 306 5 3 HELIX 17 AB8 SER A 314 LEU A 321 5 8 HELIX 18 AB9 ASP A 322 ARG A 338 1 17 SHEET 1 AA1 6 GLN A 47 ASP A 52 0 SHEET 2 AA1 6 ARG A 20 SER A 25 1 N LEU A 21 O GLU A 49 SHEET 3 AA1 6 LEU A 75 SER A 78 1 O TRP A 77 N TYR A 24 SHEET 4 AA1 6 VAL A 247 ILE A 250 -1 O PHE A 249 N LEU A 76 SHEET 5 AA1 6 ALA A 114 SER A 116 -1 N TYR A 115 O ALA A 248 SHEET 6 AA1 6 ARG A 109 LEU A 110 -1 N LEU A 110 O ALA A 114 SHEET 1 AA2 5 ALA A 194 TYR A 196 0 SHEET 2 AA2 5 VAL A 156 TRP A 159 1 N VAL A 156 O ALA A 194 SHEET 3 AA2 5 LEU A 213 PHE A 218 1 O TYR A 215 N ALA A 157 SHEET 4 AA2 5 GLU A 120 ASN A 127 -1 N VAL A 125 O ALA A 214 SHEET 5 AA2 5 LEU A 232 ALA A 235 -1 O GLY A 233 N TYR A 126 SHEET 1 AA3 6 ALA A 194 TYR A 196 0 SHEET 2 AA3 6 VAL A 156 TRP A 159 1 N VAL A 156 O ALA A 194 SHEET 3 AA3 6 LEU A 213 PHE A 218 1 O TYR A 215 N ALA A 157 SHEET 4 AA3 6 GLU A 120 ASN A 127 -1 N VAL A 125 O ALA A 214 SHEET 5 AA3 6 THR A 241 ILE A 244 -1 O ILE A 244 N GLU A 120 SHEET 6 AA3 6 VAL A 308 ALA A 310 1 O TYR A 309 N THR A 241 CRYST1 72.170 72.170 114.300 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013856 0.008000 0.000000 0.00000 SCALE2 0.000000 0.016000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008749 0.00000