HEADER TRANSPORT PROTEIN 25-JUN-21 7F6T TITLE CRYSTAL STRUCTURE OF METAL-CITRATE-BINDING MUTANT (Y221F) PROTEIN TITLE 2 (MCTA) OF ABC TRANSPORTER IN APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON ABC TRANSPORTER, PERIPLASMIC IRON-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN ATCC 27634 / DSM SOURCE 3 579 / HB8); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: ATCC 27634 / DSM 579 / HB8; SOURCE 6 ATCC: 27634; SOURCE 7 GENE: TTHB177; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS SUBSTRATE-BINDING PROTEIN, METAL ION, SECONDARY TRANSPORTER, KEYWDS 2 SYMPORTER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.P.KANAUJIA,S.K.MANDAL REVDAT 3 29-NOV-23 7F6T 1 REMARK REVDAT 2 02-MAR-22 7F6T 1 JRNL REVDAT 1 01-DEC-21 7F6T 0 JRNL AUTH S.K.MANDAL,S.P.KANAUJIA JRNL TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO A NOVEL MG 2+ JRNL TITL 2 -CITRATE-BINDING PROTEIN FROM THE ABC TRANSPORTER JRNL TITL 3 SUPERFAMILY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 1516 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 34866608 JRNL DOI 10.1107/S2059798321010457 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.K.MANDAL,S.P.KANAUJIA REMARK 1 TITL STRUCTURAL AND THERMODYNAMIC INSIGHTS INTO A NOVEL REMARK 1 TITL 2 MG2+-CITRATE-BINDING PROTEIN FROM THE ABC TRANSPORTER REMARK 1 TITL 3 SUPERFAMILY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 77 2021 REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI DOI.ORG/10.1107/S2059798321010457 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2240 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.280 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2770 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2670 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3755 ; 2.051 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6113 ; 1.546 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.705 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;31.786 ;20.452 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;15.692 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3141 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 689 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7002 36.8522 28.6199 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.0346 REMARK 3 T33: 0.0149 T12: 0.0108 REMARK 3 T13: 0.0295 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.3140 L22: 2.0890 REMARK 3 L33: 1.9397 L12: 0.2195 REMARK 3 L13: 0.3600 L23: 0.7557 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: 0.0593 S13: 0.0160 REMARK 3 S21: 0.3239 S22: -0.0430 S23: 0.0195 REMARK 3 S31: 0.3190 S32: 0.0509 S33: 0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7F6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300022988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.3.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 54.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7F6E REMARK 200 REMARK 200 REMARK: ORTHORHOMBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC, 20% REMARK 280 PEG 3350, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.18500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.70500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.18500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.70500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.18500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.70500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.18500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 GLY A 339 REMARK 465 GLN A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 656 O HOH A 687 1.81 REMARK 500 O ALA A 70 O HOH A 501 1.99 REMARK 500 O HOH A 641 O HOH A 662 2.00 REMARK 500 O HOH A 665 O HOH A 702 2.01 REMARK 500 O HOH A 558 O HOH A 716 2.13 REMARK 500 O HOH A 583 O HOH A 731 2.16 REMARK 500 O PHE A 62 OG1 THR A 66 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 65 CD GLU A 65 OE2 0.071 REMARK 500 GLU A 134 CD GLU A 134 OE1 0.141 REMARK 500 GLU A 141 CD GLU A 141 OE1 0.099 REMARK 500 GLU A 141 CD GLU A 141 OE2 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 177 CG - CD - NE ANGL. DEV. = -17.0 DEGREES REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 286 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 44 0.49 -69.52 REMARK 500 SER A 72 -155.36 -121.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 237 -10.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 6 O REMARK 620 2 ASP A 265 OD2 91.1 REMARK 620 3 HOH A 554 O 95.9 112.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 288 OG1 REMARK 620 2 HOH A 707 O 145.6 REMARK 620 N 1 DBREF 7F6T A 1 340 UNP Q53VZ2 Q53VZ2_THET8 19 358 SEQADV 7F6T MET A -1 UNP Q53VZ2 INITIATING METHIONINE SEQADV 7F6T MET A 0 UNP Q53VZ2 EXPRESSION TAG SEQADV 7F6T PHE A 221 UNP Q53VZ2 TYR 239 ENGINEERED MUTATION SEQRES 1 A 342 MET MET GLN GLN SER ARG PRO ALA SER ASP PRO GLN VAL SEQRES 2 A 342 VAL GLU ALA ALA ARG LYS GLU GLY ARG LEU ILE ILE TYR SEQRES 3 A 342 SER SER THR ASP GLN SER SER ALA GLN ALA LEU LEU ASP SEQRES 4 A 342 ASP PHE ARG LYS LEU TYR PRO PHE ILE GLN ILE GLU TYR SEQRES 5 A 342 ASN ASP LEU GLY THR GLN ALA ILE TYR ASP ARG PHE VAL SEQRES 6 A 342 SER GLU THR ALA ALA GLY ALA SER SER ALA ASP LEU LEU SEQRES 7 A 342 TRP SER SER ALA MET GLU LEU GLN VAL LYS LEU ALA SER SEQRES 8 A 342 GLU GLY TYR ALA LEU PRO TYR ASP SER PRO GLU ALA LYS SEQRES 9 A 342 ASN TRP PRO ALA ASN ALA ARG LEU GLY ASN LEU ALA TYR SEQRES 10 A 342 SER THR THR LEU GLU PRO ALA VAL VAL VAL TYR ASN LYS SEQRES 11 A 342 ARG PHE LEU LYS PRO GLU GLU VAL PRO THR THR ARG GLU SEQRES 12 A 342 GLY LEU ALA ARG LEU LEU GLN GLU PRO ARG MET ARG GLY SEQRES 13 A 342 ARG VAL ALA THR TRP ASP PRO GLU ARG SER ALA VAL GLY SEQRES 14 A 342 PHE THR ILE LEU LYS ALA ASP TYR ASP ARG PHE PRO ALA SEQRES 15 A 342 PHE GLN GLU LEU ALA ARG ALA PHE GLY LYS ALA GLN ALA SEQRES 16 A 342 ALA LEU TYR SER SER THR GLY ALA ALA PHE GLU LYS VAL SEQRES 17 A 342 ILE SER GLY GLU HIS TYR LEU ALA TYR GLY PHE PHE GLY SEQRES 18 A 342 SER PHE ALA LEU LEU ARG GLN ARG THR VAL LYS ASP LEU SEQRES 19 A 342 GLY ILE ALA TYR LEU THR ASP GLY THR VAL ALA ILE GLN SEQRES 20 A 342 ARG VAL ALA PHE ILE ASN LYS ARG ALA ALA HIS PRO ASN SEQRES 21 A 342 ALA ALA LYS LEU PHE LEU ASP TYR LEU LEU SER LEU ARG SEQRES 22 A 342 GLY GLN ASN LEU MET ALA TYR THR ALA LEU ILE PHE ALA SEQRES 23 A 342 ARG ARG GLU THR VAL VAL GLY GLU ALA THR PRO GLN ALA SEQRES 24 A 342 LEU TYR LYS ALA VAL GLY GLY LYS ASP LYS VAL TYR ALA SEQRES 25 A 342 ILE PRO VAL SER THR GLU ILE LEU LYS ASN LEU ASP PRO SEQRES 26 A 342 ALA GLU ARG MET ARG PHE LEU THR PHE TRP ARG GLN ALA SEQRES 27 A 342 VAL ARG GLY GLN HET NA A 401 1 HET NA A 402 1 HET CL A 403 1 HET CO2 A 404 3 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET GOL A 408 6 HET PO4 A 409 5 HET ACT A 410 4 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM CO2 CARBON DIOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 5 CO2 C O2 FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 GOL C3 H8 O3 FORMUL 10 PO4 O4 P 3- FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *249(H2 O) HELIX 1 AA1 ASP A 8 GLY A 19 1 12 HELIX 2 AA2 ASP A 28 TYR A 43 1 16 HELIX 3 AA3 GLY A 54 GLY A 69 1 16 HELIX 4 AA4 ALA A 80 SER A 89 1 10 HELIX 5 AA5 PRO A 105 ARG A 109 5 5 HELIX 6 AA6 LYS A 132 VAL A 136 5 5 HELIX 7 AA7 THR A 139 LEU A 147 1 9 HELIX 8 AA8 GLN A 148 ARG A 153 5 6 HELIX 9 AA9 SER A 164 PHE A 178 1 15 HELIX 10 AB1 PRO A 179 ALA A 191 1 13 HELIX 11 AB2 SER A 198 SER A 208 1 11 HELIX 12 AB3 GLY A 219 VAL A 229 1 11 HELIX 13 AB4 HIS A 256 SER A 269 1 14 HELIX 14 AB5 SER A 269 ALA A 280 1 12 HELIX 15 AB6 THR A 294 GLY A 303 1 10 HELIX 16 AB7 GLY A 304 ASP A 306 5 3 HELIX 17 AB8 SER A 314 LEU A 321 5 8 HELIX 18 AB9 ASP A 322 ARG A 338 1 17 SHEET 1 AA1 5 GLN A 47 ASP A 52 0 SHEET 2 AA1 5 ARG A 20 SER A 25 1 N SER A 25 O ASN A 51 SHEET 3 AA1 5 LEU A 75 SER A 78 1 O TRP A 77 N TYR A 24 SHEET 4 AA1 5 VAL A 247 ILE A 250 -1 O PHE A 249 N LEU A 76 SHEET 5 AA1 5 TYR A 115 SER A 116 -1 N TYR A 115 O ALA A 248 SHEET 1 AA2 5 ALA A 194 TYR A 196 0 SHEET 2 AA2 5 VAL A 156 TRP A 159 1 N VAL A 156 O ALA A 194 SHEET 3 AA2 5 LEU A 213 PHE A 218 1 O TYR A 215 N ALA A 157 SHEET 4 AA2 5 GLU A 120 ASN A 127 -1 N VAL A 123 O PHE A 217 SHEET 5 AA2 5 LEU A 232 ALA A 235 -1 O GLY A 233 N TYR A 126 SHEET 1 AA3 6 ALA A 194 TYR A 196 0 SHEET 2 AA3 6 VAL A 156 TRP A 159 1 N VAL A 156 O ALA A 194 SHEET 3 AA3 6 LEU A 213 PHE A 218 1 O TYR A 215 N ALA A 157 SHEET 4 AA3 6 GLU A 120 ASN A 127 -1 N VAL A 123 O PHE A 217 SHEET 5 AA3 6 THR A 241 ILE A 244 -1 O ILE A 244 N GLU A 120 SHEET 6 AA3 6 VAL A 308 ALA A 310 1 O TYR A 309 N THR A 241 LINK O ALA A 6 NA NA A 401 1555 1555 2.90 LINK OD2 ASP A 265 NA NA A 401 1555 1555 2.74 LINK OG1 THR A 288 NA NA A 402 1555 1555 3.05 LINK NA NA A 401 O HOH A 554 1555 1555 2.90 LINK NA NA A 402 O HOH A 707 1555 1555 2.31 CRYST1 44.700 108.370 163.410 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006120 0.00000