HEADER PLANT PROTEIN 05-JUL-21 7FA0 TITLE THE CRYSTAL STRUCTURE OF VYPAL2-C214A, A DEAD MUTANT OF VYPAL2 PEPTIDE TITLE 2 ASPARAGINYL LIGASE IN FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE ASPARAGINYL LIGASES; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: D171 (FORMING SNN), RESIDUE 172 IS HD0 (HIS + SNN) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIOLA PHILIPPICA; SOURCE 3 ORGANISM_TAXID: 316493; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS AEP, PAL, LEGUMAIN, PEPTIDE LIGASE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HU,A.SAHILI,J.LESCAR REVDAT 6 01-MAY-24 7FA0 1 TITLE REVDAT 5 29-NOV-23 7FA0 1 REMARK REVDAT 4 15-NOV-23 7FA0 1 ATOM REVDAT 3 14-DEC-22 7FA0 1 JRNL REVDAT 2 30-NOV-22 7FA0 1 JRNL REVDAT 1 13-JUL-22 7FA0 0 JRNL AUTH S.HU,A.EL SAHILI,S.KISHORE,Y.H.WONG,X.HEMU,B.C.GOH,S.ZHIPEI, JRNL AUTH 2 Z.WANG,J.P.TAM,C.F.LIU,J.LESCAR JRNL TITL STRUCTURAL BASIS FOR PROENZYME MATURATION, SUBSTRATE JRNL TITL 2 RECOGNITION, AND LIGATION BY A HYPERACTIVE PEPTIDE JRNL TITL 3 ASPARAGINYL LIGASE. JRNL REF PLANT CELL V. 34 4936 2022 JRNL REFN ESSN 1532-298X JRNL PMID 36099055 JRNL DOI 10.1093/PLCELL/KOAC281 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 51968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2618 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2047 REMARK 3 BIN FREE R VALUE : 0.2928 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 58 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05470 REMARK 3 B22 (A**2) : -0.59280 REMARK 3 B33 (A**2) : 1.64750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.125 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.117 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.107 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4546 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6194 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1534 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 781 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4546 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 621 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4220 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.59 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.31 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -3.5334 -8.2454 -8.8859 REMARK 3 T TENSOR REMARK 3 T11: -0.086 T22: -0.099 REMARK 3 T33: -0.0613 T12: 0.0137 REMARK 3 T13: 0.0191 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.3345 L22: 1.2669 REMARK 3 L33: 1.0169 L12: 0.1709 REMARK 3 L13: -0.3838 L23: -0.4467 REMARK 3 S TENSOR REMARK 3 S11: 0.0688 S12: -0.0355 S13: -0.0076 REMARK 3 S21: -0.0355 S22: 0.0269 S23: -0.0683 REMARK 3 S31: -0.0076 S32: -0.0683 S33: -0.0957 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -41.3595 8.3257 -11.2416 REMARK 3 T TENSOR REMARK 3 T11: -0.0894 T22: -0.1015 REMARK 3 T33: -0.1063 T12: -0.0044 REMARK 3 T13: -0.0071 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.4262 L22: 1.7368 REMARK 3 L33: 1.4136 L12: 0.5078 REMARK 3 L13: -0.1261 L23: -0.3847 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.1152 S13: -0.14 REMARK 3 S21: 0.1152 S22: -0.0744 S23: 0.1142 REMARK 3 S31: -0.14 S32: 0.1142 S33: 0.056 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.09147 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.00800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6IDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM FORMATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.24750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.33500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.27300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.33500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.24750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.27300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 330 REMARK 465 GLU A 331 REMARK 465 ASN A 332 REMARK 465 SER B 50 REMARK 465 ARG B 326 REMARK 465 THR B 327 REMARK 465 PHE B 328 REMARK 465 VAL B 329 REMARK 465 ASP B 330 REMARK 465 GLU B 331 REMARK 465 ASN B 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HD0 A 172 CA - C - N ANGL. DEV. = 22.2 DEGREES REMARK 500 HD0 B 172 CA - C - N ANGL. DEV. = 24.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 97 33.65 73.52 REMARK 500 THR A 203 40.21 -87.64 REMARK 500 ASP B 97 32.02 72.86 REMARK 500 THR B 203 41.83 -96.20 REMARK 500 LEU B 223 -50.07 -120.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HD0 A 172 GLY A 173 -128.20 REMARK 500 HD0 B 172 GLY B 173 -125.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HD0 A 172 28.24 REMARK 500 HD0 B 172 28.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 756 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 713 DISTANCE = 5.92 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7F5P RELATED DB: PDB DBREF1 7FA0 A 50 332 UNP A0A509GV09_9ROSI DBREF2 7FA0 A A0A509GV09 50 332 DBREF1 7FA0 B 50 332 UNP A0A509GV09_9ROSI DBREF2 7FA0 B A0A509GV09 50 332 SEQADV 7FA0 A UNP A0A509GV0 ASP 171 DELETION SEQADV 7FA0 HD0 A 172 UNP A0A509GV0 HIS 172 CONFLICT SEQADV 7FA0 ALA A 214 UNP A0A509GV0 CYS 214 ENGINEERED MUTATION SEQADV 7FA0 B UNP A0A509GV0 ASP 171 DELETION SEQADV 7FA0 HD0 B 172 UNP A0A509GV0 HIS 172 CONFLICT SEQADV 7FA0 ALA B 214 UNP A0A509GV0 CYS 214 ENGINEERED MUTATION SEQRES 1 A 282 SER ILE GLY THR ARG TRP ALA VAL LEU ILE ALA GLY SER SEQRES 2 A 282 LYS GLY TYR HIS ASN TYR ARG HIS GLN ALA ASP VAL CYS SEQRES 3 A 282 HIS MET TYR GLN ILE LEU ARG LYS GLY GLY VAL LYS ASP SEQRES 4 A 282 GLU ASN ILE ILE VAL PHE MET TYR ASP ASP ILE ALA TYR SEQRES 5 A 282 ASN GLU SER ASN PRO PHE PRO GLY ILE ILE ILE ASN LYS SEQRES 6 A 282 PRO GLY GLY GLU ASN VAL TYR LYS GLY VAL PRO LYS ASP SEQRES 7 A 282 TYR THR GLY GLU ASP ILE ASN ASN VAL ASN PHE LEU ALA SEQRES 8 A 282 ALA ILE LEU GLY ASN LYS SER ALA ILE ILE GLY GLY SER SEQRES 9 A 282 GLY LYS VAL LEU ASP THR SER PRO ASN ASP HIS ILE PHE SEQRES 10 A 282 ILE TYR TYR ALA HD0 GLY ALA PRO GLY LYS ILE GLY MET SEQRES 11 A 282 PRO SER LYS PRO TYR LEU TYR ALA ASP ASP LEU VAL ASP SEQRES 12 A 282 THR LEU LYS GLN LYS ALA ALA THR GLY THR TYR LYS SER SEQRES 13 A 282 MET VAL PHE TYR VAL GLU ALA ALA ASN ALA GLY SER MET SEQRES 14 A 282 PHE GLU GLY LEU LEU PRO GLU GLY THR ASN ILE TYR ALA SEQRES 15 A 282 MET ALA ALA SER ASN SER THR GLU GLY SER TRP ILE THR SEQRES 16 A 282 TYR CYS PRO GLY THR PRO ASP PHE PRO PRO GLU PHE ASP SEQRES 17 A 282 VAL CYS LEU GLY ASP LEU TRP SER ILE THR PHE LEU GLU SEQRES 18 A 282 ASP CYS ASP ALA HIS ASN LEU ARG THR GLU THR VAL HIS SEQRES 19 A 282 GLN GLN PHE GLU LEU VAL LYS LYS LYS ILE ALA TYR ALA SEQRES 20 A 282 SER THR VAL SER GLN TYR GLY ASP ILE PRO ILE SER LYS SEQRES 21 A 282 ASP SER LEU SER VAL TYR MET GLY THR ASP PRO ALA ASN SEQRES 22 A 282 ASP ASN ARG THR PHE VAL ASP GLU ASN SEQRES 1 B 282 SER ILE GLY THR ARG TRP ALA VAL LEU ILE ALA GLY SER SEQRES 2 B 282 LYS GLY TYR HIS ASN TYR ARG HIS GLN ALA ASP VAL CYS SEQRES 3 B 282 HIS MET TYR GLN ILE LEU ARG LYS GLY GLY VAL LYS ASP SEQRES 4 B 282 GLU ASN ILE ILE VAL PHE MET TYR ASP ASP ILE ALA TYR SEQRES 5 B 282 ASN GLU SER ASN PRO PHE PRO GLY ILE ILE ILE ASN LYS SEQRES 6 B 282 PRO GLY GLY GLU ASN VAL TYR LYS GLY VAL PRO LYS ASP SEQRES 7 B 282 TYR THR GLY GLU ASP ILE ASN ASN VAL ASN PHE LEU ALA SEQRES 8 B 282 ALA ILE LEU GLY ASN LYS SER ALA ILE ILE GLY GLY SER SEQRES 9 B 282 GLY LYS VAL LEU ASP THR SER PRO ASN ASP HIS ILE PHE SEQRES 10 B 282 ILE TYR TYR ALA HD0 GLY ALA PRO GLY LYS ILE GLY MET SEQRES 11 B 282 PRO SER LYS PRO TYR LEU TYR ALA ASP ASP LEU VAL ASP SEQRES 12 B 282 THR LEU LYS GLN LYS ALA ALA THR GLY THR TYR LYS SER SEQRES 13 B 282 MET VAL PHE TYR VAL GLU ALA ALA ASN ALA GLY SER MET SEQRES 14 B 282 PHE GLU GLY LEU LEU PRO GLU GLY THR ASN ILE TYR ALA SEQRES 15 B 282 MET ALA ALA SER ASN SER THR GLU GLY SER TRP ILE THR SEQRES 16 B 282 TYR CYS PRO GLY THR PRO ASP PHE PRO PRO GLU PHE ASP SEQRES 17 B 282 VAL CYS LEU GLY ASP LEU TRP SER ILE THR PHE LEU GLU SEQRES 18 B 282 ASP CYS ASP ALA HIS ASN LEU ARG THR GLU THR VAL HIS SEQRES 19 B 282 GLN GLN PHE GLU LEU VAL LYS LYS LYS ILE ALA TYR ALA SEQRES 20 B 282 SER THR VAL SER GLN TYR GLY ASP ILE PRO ILE SER LYS SEQRES 21 B 282 ASP SER LEU SER VAL TYR MET GLY THR ASP PRO ALA ASN SEQRES 22 B 282 ASP ASN ARG THR PHE VAL ASP GLU ASN HET HD0 A 172 17 HET HD0 B 172 17 HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG A 401 14 HET NAG A 402 14 HET NAG B 401 14 HET NAG B 402 14 HETNAM HD0 (2S)-2-[(3S)-3-AMINO-2,5-DIOXOPYRROLIDIN-1-YL]-3-(1H- HETNAM 2 HD0 IMIDAZOL-5-YL)PROPANOIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 HD0 2(C10 H12 N4 O4) FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 9 HOH *471(H2 O) HELIX 1 AA1 GLY A 64 HIS A 66 5 3 HELIX 2 AA2 ASN A 67 GLY A 84 1 18 HELIX 3 AA3 LYS A 87 GLU A 89 5 3 HELIX 4 AA4 THR A 129 ILE A 133 5 5 HELIX 5 AA5 ASN A 134 GLY A 144 1 11 HELIX 6 AA6 ASN A 145 ILE A 149 5 5 HELIX 7 AA7 ALA A 188 GLY A 202 1 15 HELIX 8 AA8 ASN A 215 PHE A 220 5 6 HELIX 9 AA9 LEU A 264 ASP A 274 1 11 HELIX 10 AB1 ALA A 275 HIS A 276 5 2 HELIX 11 AB2 ASN A 277 GLU A 281 5 5 HELIX 12 AB3 THR A 282 ILE A 294 1 13 HELIX 13 AB4 ILE A 306 SER A 312 5 7 HELIX 14 AB5 LEU A 313 GLY A 318 1 6 HELIX 15 AB6 ASP A 320 ASP A 324 5 5 HELIX 16 AB7 GLY B 64 HIS B 66 5 3 HELIX 17 AB8 ASN B 67 GLY B 84 1 18 HELIX 18 AB9 LYS B 87 GLU B 89 5 3 HELIX 19 AC1 THR B 129 ILE B 133 5 5 HELIX 20 AC2 ASN B 134 GLY B 144 1 11 HELIX 21 AC3 ASN B 145 ILE B 149 5 5 HELIX 22 AC4 ALA B 188 GLY B 202 1 15 HELIX 23 AC5 ASN B 215 PHE B 220 5 6 HELIX 24 AC6 LEU B 264 HIS B 276 1 13 HELIX 25 AC7 THR B 282 ILE B 294 1 13 HELIX 26 AC8 ILE B 306 SER B 312 5 7 HELIX 27 AC9 LEU B 313 GLY B 318 1 6 HELIX 28 AD1 ASP B 320 ASP B 324 5 5 SHEET 1 AA1 6 ILE A 91 PHE A 94 0 SHEET 2 AA1 6 ARG A 54 ALA A 60 1 N LEU A 58 O PHE A 94 SHEET 3 AA1 6 HIS A 164 ALA A 170 1 O TYR A 168 N ILE A 59 SHEET 4 AA1 6 SER A 206 VAL A 211 1 O TYR A 210 N ILE A 167 SHEET 5 AA1 6 ILE A 230 ALA A 234 1 O TYR A 231 N MET A 207 SHEET 6 AA1 6 SER A 301 GLY A 304 -1 O SER A 301 N ALA A 234 SHEET 1 AA2 3 GLY A 173 ALA A 174 0 SHEET 2 AA2 3 LYS A 177 ILE A 178 -1 O LYS A 177 N ALA A 174 SHEET 3 AA2 3 LEU A 186 TYR A 187 -1 O LEU A 186 N ILE A 178 SHEET 1 AA3 2 ILE A 244 THR A 245 0 SHEET 2 AA3 2 GLY A 262 ASP A 263 -1 O GLY A 262 N THR A 245 SHEET 1 AA4 6 ILE B 91 PHE B 94 0 SHEET 2 AA4 6 ARG B 54 ALA B 60 1 N LEU B 58 O PHE B 94 SHEET 3 AA4 6 HIS B 164 ALA B 170 1 O TYR B 168 N ILE B 59 SHEET 4 AA4 6 SER B 206 VAL B 211 1 O TYR B 210 N ILE B 167 SHEET 5 AA4 6 ILE B 230 ALA B 234 1 O TYR B 231 N MET B 207 SHEET 6 AA4 6 SER B 301 GLY B 304 -1 O SER B 301 N ALA B 234 SHEET 1 AA5 3 GLY B 173 ALA B 174 0 SHEET 2 AA5 3 LYS B 177 ILE B 178 -1 O LYS B 177 N ALA B 174 SHEET 3 AA5 3 LEU B 186 TYR B 187 -1 O LEU B 186 N ILE B 178 SHEET 1 AA6 2 ILE B 244 THR B 245 0 SHEET 2 AA6 2 GLY B 262 ASP B 263 -1 O GLY B 262 N THR B 245 SSBOND 1 CYS A 247 CYS A 260 1555 1555 2.06 SSBOND 2 CYS B 247 CYS B 260 1555 1555 2.06 LINK ND2 ASN A 102 C1 NAG A 401 1555 1555 1.43 LINK ND2 ASN A 145 C1 NAG C 1 1555 1555 1.43 LINK C ALA A 170 N HD0 A 172 1555 1555 1.37 LINK C HD0 A 172 N GLY A 173 1555 1555 1.32 LINK ND2 ASN A 237 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN B 102 C1 NAG D 1 1555 1555 1.42 LINK ND2 ASN B 145 C1 NAG B 402 1555 1555 1.43 LINK C ALA B 170 N HD0 B 172 1555 1555 1.34 LINK C HD0 B 172 N GLY B 173 1555 1555 1.32 LINK ND2 ASN B 237 C1 NAG B 401 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.39 CISPEP 1 LYS A 183 PRO A 184 0 2.55 CISPEP 2 LYS B 183 PRO B 184 0 2.28 CRYST1 76.495 78.546 92.670 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010791 0.00000