HEADER TRANSCRIPTION 07-JUL-21 7FAX TITLE COMPLEX STRUCTURE OF TBLEO1 AND LW DOMAIN FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBLW; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TBLEO1 PEPTIDE; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 3 ORGANISM_TAXID: 185431; SOURCE 4 GENE: TB927.2.3480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI TREU927; SOURCE 9 ORGANISM_TAXID: 185431; SOURCE 10 GENE: TB09.211.3840; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS LW, TRANSCRIPTION, PAF1C EXPDTA X-RAY DIFFRACTION AUTHOR S.LIAO,J.GAO,X.TU REVDAT 2 24-JAN-24 7FAX 1 JRNL REVDAT 1 27-JUL-22 7FAX 0 JRNL AUTH J.GAO,M.JISHAGE,Y.WANG,R.WANG,M.CHEN,Z.ZHU,J.ZHANG,Y.DIWU, JRNL AUTH 2 C.XU,S.LIAO,R.G.ROEDER,X.TU JRNL TITL STRUCTURAL BASIS FOR EVOLUTIONARILY CONSERVED INTERACTIONS JRNL TITL 2 BETWEEN TFIIS AND PAF1C. JRNL REF INT.J.BIOL.MACROMOL. V. 253 26764 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37696373 JRNL DOI 10.1016/J.IJBIOMAC.2023.126764 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 44.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.3680 - 4.5150 0.90 1264 135 0.1777 0.2058 REMARK 3 2 4.5150 - 3.5925 0.89 1233 154 0.1769 0.1880 REMARK 3 3 3.5925 - 3.1409 0.90 1241 136 0.2207 0.2459 REMARK 3 4 3.1409 - 2.8549 0.90 1259 142 0.2295 0.2718 REMARK 3 5 2.8549 - 2.6509 0.90 1269 147 0.2167 0.2445 REMARK 3 6 2.6509 - 2.4950 0.90 1231 133 0.2282 0.2675 REMARK 3 7 2.4950 - 2.3704 0.91 1271 132 0.2362 0.3084 REMARK 3 8 2.3704 - 2.2674 0.90 1249 137 0.2222 0.2577 REMARK 3 9 2.2674 - 2.1802 0.90 1248 138 0.2269 0.2825 REMARK 3 10 2.1802 - 2.1051 0.90 1269 138 0.2365 0.2229 REMARK 3 11 2.1051 - 2.0394 0.90 1240 140 0.2300 0.2490 REMARK 3 12 2.0394 - 1.9811 0.90 1240 138 0.2497 0.2699 REMARK 3 13 1.9811 - 1.9290 0.90 1221 136 0.2339 0.2643 REMARK 3 14 1.9290 - 1.8820 0.90 1294 148 0.2459 0.2411 REMARK 3 15 1.8820 - 1.8393 0.90 1240 138 0.2399 0.2409 REMARK 3 16 1.8393 - 1.8002 0.90 1274 138 0.2493 0.2493 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.3500 REMARK 3 OPERATOR: -K,-H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.1551 11.5895 11.9306 REMARK 3 T TENSOR REMARK 3 T11: 0.0614 T22: 0.0393 REMARK 3 T33: 0.0691 T12: -0.0047 REMARK 3 T13: -0.0167 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.2189 L22: 1.0662 REMARK 3 L33: 1.3143 L12: 0.2847 REMARK 3 L13: 0.2034 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0340 S13: 0.0409 REMARK 3 S21: -0.0374 S22: -0.0155 S23: -0.0674 REMARK 3 S31: 0.0385 S32: -0.0290 S33: 0.0012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 75.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NACOOH, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.95950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.95950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.42150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.95950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.95950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.42150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.95950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 39.95950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.42150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 39.95950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.95950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.42150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MSE A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 6 REMARK 465 LEU A 110 REMARK 465 GLY A 111 REMARK 465 ASP B 137 REMARK 465 LYS B 138 REMARK 465 SER B 139 REMARK 465 LEU B 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 127 CD GLU B 127 OE2 -0.075 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FAX A 4 111 UNP Q586Y0 Q586Y0_TRYB2 251 358 DBREF 7FAX B 125 140 UNP Q38DC5 Q38DC5_TRYB2 71 86 SEQADV 7FAX GLY A 1 UNP Q586Y0 EXPRESSION TAG SEQADV 7FAX HIS A 2 UNP Q586Y0 EXPRESSION TAG SEQADV 7FAX MSE A 3 UNP Q586Y0 EXPRESSION TAG SEQADV 7FAX MSE A 27 UNP Q586Y0 CYS 274 ENGINEERED MUTATION SEQADV 7FAX GLY B 123 UNP Q38DC5 EXPRESSION TAG SEQADV 7FAX SER B 124 UNP Q38DC5 EXPRESSION TAG SEQADV 7FAX LEU B 133 UNP Q38DC5 PHE 79 ENGINEERED MUTATION SEQRES 1 A 111 GLY HIS MSE SER ARG HIS ASP VAL THR ASN ALA THR LEU SEQRES 2 A 111 GLU THR THR GLY LYS GLU LEU THR GLU THR TYR MSE GLU SEQRES 3 A 111 MSE LEU ASN GLY ASP VAL VAL GLU VAL SER ILE ALA ASN SEQRES 4 A 111 GLU GLU ARG ILE VAL SER LEU LEU SER SER LEU ALA SER SEQRES 5 A 111 ALA ASN VAL THR LEU LYS GLN LEU ILE GLY THR LYS ILE SEQRES 6 A 111 GLY VAL ALA VAL GLY GLN PHE LEU SER ASP GLY PHE PRO SEQRES 7 A 111 PRO HIS ILE VAL ARG PHE SER LYS GLY ILE LEU ASP TYR SEQRES 8 A 111 TRP PHE ARG GLN LEU PRO GLU GLU VAL GLN LYS GLN LEU SEQRES 9 A 111 LEU ALA LYS ARG ALA LEU GLY SEQRES 1 B 18 GLY SER THR LEU GLU ASP LEU PHE GLY PRO LEU PHE TYR SEQRES 2 B 18 VAL ASP LYS SER LEU MODRES 7FAX MSE A 25 MET MODIFIED RESIDUE HET MSE A 25 8 HET MSE A 27 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *23(H2 O) HELIX 1 AA1 THR A 9 MSE A 27 1 19 HELIX 2 AA2 SER A 36 ALA A 51 1 16 HELIX 3 AA3 THR A 56 LYS A 64 1 9 HELIX 4 AA4 LYS A 64 GLN A 71 1 8 HELIX 5 AA5 PHE A 72 SER A 74 5 3 HELIX 6 AA6 PRO A 78 LEU A 96 1 19 HELIX 7 AA7 PRO A 97 LYS A 107 1 11 HELIX 8 AA8 THR B 125 GLY B 131 1 7 SHEET 1 AA1 2 LEU A 28 ASN A 29 0 SHEET 2 AA1 2 VAL A 32 VAL A 33 -1 O VAL A 32 N ASN A 29 LINK C TYR A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N GLU A 26 1555 1555 1.34 LINK C GLU A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N LEU A 28 1555 1555 1.33 CRYST1 79.919 79.919 38.843 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025745 0.00000