HEADER DE NOVO PROTEIN 08-JUL-21 7FB8 TITLE DE NOVO-DESIGNED AND DISULFIDE-BRIDGED PEPTIDE HETERODIMER - HD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASP-ASP-LYS-ASP-CYS-ASP-GLU-TYR-CYS-LYS-LYS-THR-LYS-GLU- COMPND 3 NH2; COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLU-LE1-THR-GLY-HIS-ILE-GLU-GLY-PRO-THR-LE1-THR-LE1-HIS- COMPND 8 CYS-LYS-NH2; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS M13; SOURCE 4 ORGANISM_TAXID: 1977402; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS M13; SOURCE 8 ORGANISM_TAXID: 1977402 KEYWDS DE NOVO DESIGN, DISULFIDE-BRIDGED PEPTIDE, HETERODIMER, KEYWDS 2 PENICILLAMINE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.YAO,S.YAO,Y.ZHENG,A.MOYER,D.BAKER,C.WU REVDAT 3 15-NOV-23 7FB8 1 ATOM REVDAT 2 22-JUN-22 7FB8 1 REMARK REVDAT 1 18-MAY-22 7FB8 0 JRNL AUTH S.YAO,A.MOYER,Y.ZHENG,Y.SHEN,X.MENG,C.YUAN,Y.ZHAO,H.YAO, JRNL AUTH 2 D.BAKER,C.WU JRNL TITL DE NOVO DESIGN AND DIRECTED FOLDING OF DISULFIDE-BRIDGED JRNL TITL 2 PEPTIDE HETERODIMERS. JRNL REF NAT COMMUN V. 13 1539 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35318337 JRNL DOI 10.1038/S41467-022-29210-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZHENG,L.ZHAI,Y.ZHAO,C.WU REMARK 1 TITL ORTHOGONAL CYSTEINE-PENICILLAMINE DISULFIDE PAIRING FOR REMARK 1 TITL 2 DIRECTING THE OXIDATIVE FOLDING OF PEPTIDES. REMARK 1 REF J AM CHEM SOC V. 137 15094 2015 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 26588670 REMARK 1 DOI 10.1021/JACS.5B10779 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023146. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.3 MM HD1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36428 RELATED DB: BMRB REMARK 900 DE NOVO-DESIGNED AND DISULFIDE-BRIDGED PEPTIDE HETERODIMER - HD1. DBREF 7FB8 B 1 15 PDB 7FB8 7FB8 1 15 DBREF 7FB8 A 1 17 PDB 7FB8 7FB8 1 17 SEQRES 1 B 15 ASP ASP LYS ASP CYS ASP GLU TYR CYS LYS LYS THR LYS SEQRES 2 B 15 GLU NH2 SEQRES 1 A 17 GLU LE1 THR GLY HIS ILE GLU GLY PRO THR LE1 THR LE1 SEQRES 2 A 17 HIS CYS LYS NH2 HET NH2 B 15 3 HET LE1 A 2 16 HET LE1 A 11 16 HET LE1 A 13 16 HET NH2 A 17 3 HETNAM NH2 AMINO GROUP HETNAM LE1 3-SULFANYL-L-VALINE HETSYN LE1 L-LE1ICILLAMINE; L-PENICILLAMINE FORMUL 1 NH2 2(H2 N) FORMUL 2 LE1 3(C5 H11 N O2 S) HELIX 1 AA1 ASP B 1 GLU B 14 1 14 SHEET 1 AA1 2 LE1 A 2 GLU A 7 0 SHEET 2 AA1 2 THR A 10 CYS A 15 -1 O HIS A 14 N THR A 3 SSBOND 1 CYS B 5 LE1 A 11 1555 1555 2.02 SSBOND 2 CYS B 9 LE1 A 13 1555 1555 2.02 SSBOND 3 LE1 A 2 CYS A 15 1555 1555 2.02 LINK C GLU B 14 N NH2 B 15 1555 1555 1.31 LINK C GLU A 1 N LE1 A 2 1555 1555 1.33 LINK C LE1 A 2 N THR A 3 1555 1555 1.32 LINK C THR A 10 N LE1 A 11 1555 1555 1.33 LINK C LE1 A 11 N THR A 12 1555 1555 1.33 LINK C THR A 12 N LE1 A 13 1555 1555 1.33 LINK C LE1 A 13 N HIS A 14 1555 1555 1.33 LINK C LYS A 16 N NH2 A 17 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 66 375 CONECT 124 405 CONECT 211 224 CONECT 224 211 225 226 CONECT 225 224 CONECT 226 224 CONECT 230 248 CONECT 245 246 CONECT 246 245 247 261 CONECT 247 246 248 249 253 CONECT 248 230 247 254 CONECT 249 247 250 251 252 CONECT 250 249 255 256 257 CONECT 251 249 258 259 260 CONECT 252 249 436 CONECT 253 247 CONECT 254 248 CONECT 255 250 CONECT 256 250 CONECT 257 250 CONECT 258 251 CONECT 259 251 CONECT 260 251 CONECT 261 246 CONECT 356 371 CONECT 368 369 CONECT 369 368 370 384 CONECT 370 369 371 372 376 CONECT 371 356 370 377 CONECT 372 370 373 374 375 CONECT 373 372 378 379 380 CONECT 374 372 381 382 383 CONECT 375 66 372 CONECT 376 370 CONECT 377 371 CONECT 378 373 CONECT 379 373 CONECT 380 373 CONECT 381 374 CONECT 382 374 CONECT 383 374 CONECT 384 369 CONECT 386 401 CONECT 398 399 CONECT 399 398 400 414 CONECT 400 399 401 402 406 CONECT 401 386 400 407 CONECT 402 400 403 404 405 CONECT 403 402 408 409 410 CONECT 404 402 411 412 413 CONECT 405 124 402 CONECT 406 400 CONECT 407 401 CONECT 408 403 CONECT 409 403 CONECT 410 403 CONECT 411 404 CONECT 412 404 CONECT 413 404 CONECT 414 399 CONECT 436 252 CONECT 443 463 CONECT 463 443 464 465 CONECT 464 463 CONECT 465 463 MASTER 78 0 5 1 2 0 0 6 240 2 65 4 END