HEADER TRANSFERASE 10-JUL-21 7FBH TITLE GERANYL PYROPHOSPHATE C6-METHYLTRANSFERASE BEZA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEZA; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. RI18; SOURCE 3 ORGANISM_TAXID: 1894972; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PCOLDI KEYWDS METHYLTRANSFERASE GERANYL PYROPHOSPHATE S-ADENOSYLMETHIONINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUTSUMI,Y.MORIWAKI,T.TERADA,K.SHIMIZU,Y.KATSUYAMA,Y.OHNISHI REVDAT 4 29-MAY-24 7FBH 1 REMARK REVDAT 3 16-MAR-22 7FBH 1 JRNL REVDAT 2 16-FEB-22 7FBH 1 JRNL REVDAT 1 01-DEC-21 7FBH 0 JRNL AUTH H.TSUTSUMI,Y.MORIWAKI,T.TERADA,K.SHIMIZU,K.SHIN-YA, JRNL AUTH 2 Y.KATSUYAMA,Y.OHNISHI JRNL TITL STRUCTURAL AND MOLECULAR BASIS OF THE CATALYTIC MECHANISM OF JRNL TITL 2 GERANYL PYROPHOSPHATE C6-METHYLTRANSFERASE: CREATION OF AN JRNL TITL 3 UNPRECEDENTED FARNESYL PYROPHOSPHATE C6-METHYLTRANSFERASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 11217 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 34626048 JRNL DOI 10.1002/ANIE.202111217 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 57399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3400 - 5.7900 1.00 2824 154 0.1574 0.1656 REMARK 3 2 5.7900 - 4.6000 1.00 2702 161 0.1623 0.2084 REMARK 3 3 4.6000 - 4.0200 1.00 2702 133 0.1493 0.1625 REMARK 3 4 4.0200 - 3.6500 1.00 2665 138 0.1744 0.1731 REMARK 3 5 3.6500 - 3.3900 1.00 2642 150 0.1942 0.2446 REMARK 3 6 3.3900 - 3.1900 1.00 2647 149 0.2128 0.2488 REMARK 3 7 3.1900 - 3.0300 1.00 2654 154 0.2195 0.2629 REMARK 3 8 3.0300 - 2.9000 1.00 2641 138 0.2151 0.2469 REMARK 3 9 2.9000 - 2.7900 1.00 2632 144 0.2191 0.2615 REMARK 3 10 2.7900 - 2.6900 1.00 2645 139 0.2319 0.3182 REMARK 3 11 2.6900 - 2.6100 1.00 2578 153 0.2260 0.2654 REMARK 3 12 2.6100 - 2.5300 1.00 2652 131 0.2322 0.2583 REMARK 3 13 2.5300 - 2.4600 1.00 2650 145 0.2281 0.2975 REMARK 3 14 2.4600 - 2.4000 1.00 2623 134 0.2141 0.2706 REMARK 3 15 2.4000 - 2.3500 1.00 2623 140 0.2244 0.2945 REMARK 3 16 2.3500 - 2.3000 1.00 2637 138 0.2277 0.3031 REMARK 3 17 2.3000 - 2.2500 0.96 2498 131 0.2810 0.3367 REMARK 3 18 2.2500 - 2.2100 0.93 2462 129 0.3383 0.4139 REMARK 3 19 2.2100 - 2.1700 0.92 2436 122 0.2660 0.3085 REMARK 3 20 2.1700 - 2.1300 0.89 2312 128 0.2769 0.3737 REMARK 3 21 2.1300 - 2.1000 0.86 2270 93 0.2987 0.3262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.258 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.083 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6704 REMARK 3 ANGLE : 1.021 9096 REMARK 3 CHIRALITY : 0.052 949 REMARK 3 PLANARITY : 0.009 1180 REMARK 3 DIHEDRAL : 8.795 970 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 24.20 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 25% PEG3350, 0.2 REMARK 280 M CH3COONH4. 0.01 M SPERMINE TETRAHYDROCHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.83300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.33500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.05550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.83300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.33500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.05550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.83300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.33500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.05550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.83300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.33500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 126760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.67000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 118.67000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 -42.83300 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 -59.33500 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -98.05550 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 42.83300 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 178.00500 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -98.05550 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 42.83300 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 -59.33500 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 98.05550 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 -42.83300 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 178.00500 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 98.05550 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 9 1.000000 0.000000 0.000000 -42.83300 REMARK 350 BIOMT2 9 0.000000 1.000000 0.000000 59.33500 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -98.05550 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 42.83300 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 59.33500 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -98.05550 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 42.83300 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 59.33500 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 98.05550 REMARK 350 BIOMT1 12 1.000000 0.000000 0.000000 -42.83300 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 59.33500 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 98.05550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 ARG A 22 REMARK 465 ILE A 23 REMARK 465 VAL A 24 REMARK 465 GLY A 25 REMARK 465 GLN A 26 REMARK 465 TYR A 27 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 THR B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 17 REMARK 465 GLN B 18 REMARK 465 ASP B 19 REMARK 465 GLU B 20 REMARK 465 VAL B 21 REMARK 465 ARG B 22 REMARK 465 ILE B 23 REMARK 465 VAL B 24 REMARK 465 GLY B 25 REMARK 465 GLN B 26 REMARK 465 TYR B 27 REMARK 465 TYR B 28 REMARK 465 ALA B 153 REMARK 465 MET B 154 REMARK 465 LYS B 303 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 ASP C 5 REMARK 465 GLU C 6 REMARK 465 LEU C 7 REMARK 465 ALA C 8 REMARK 465 SER C 9 REMARK 465 SER C 10 REMARK 465 ARG C 11 REMARK 465 GLN C 12 REMARK 465 THR C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 GLU C 16 REMARK 465 PRO C 17 REMARK 465 GLN C 18 REMARK 465 ASP C 19 REMARK 465 GLU C 20 REMARK 465 VAL C 21 REMARK 465 ARG C 22 REMARK 465 ILE C 23 REMARK 465 VAL C 24 REMARK 465 GLY C 25 REMARK 465 GLN C 26 REMARK 465 TYR C 27 REMARK 465 LYS C 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 254 O3 GOL C 403 1.99 REMARK 500 O HOH A 504 O HOH A 583 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C2 GOL A 402 O2 GOL A 402 2665 1.40 REMARK 500 C2 GOL A 402 C2 GOL A 402 2665 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 127 CD PRO A 127 N -0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 157 C - N - CA ANGL. DEV. = 26.1 DEGREES REMARK 500 PRO B 157 C - N - CD ANGL. DEV. = -35.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 -52.92 -136.27 REMARK 500 ALA A 153 -113.83 46.23 REMARK 500 MET A 154 39.11 -142.82 REMARK 500 LEU B 156 -159.19 -157.84 REMARK 500 PRO B 157 113.36 21.84 REMARK 500 TYR C 132 12.44 -140.17 REMARK 500 ASP C 175 27.21 -77.98 REMARK 500 ARG C 219 146.86 -177.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LYS B 401 REMARK 610 LYS C 401 DBREF 7FBH A 1 303 PDB 7FBH 7FBH 1 303 DBREF 7FBH B 1 303 PDB 7FBH 7FBH 1 303 DBREF 7FBH C 1 319 PDB 7FBH 7FBH 1 319 SEQRES 1 A 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 A 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 A 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 A 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 A 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 A 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 A 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 A 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 A 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 A 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 A 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 A 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 A 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 A 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 A 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 A 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 A 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 A 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 A 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 A 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 A 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 A 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 A 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 A 303 PHE GLU ARG LYS SEQRES 1 B 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 B 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 B 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 B 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 B 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 B 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 B 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 B 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 B 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 B 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 B 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 B 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 B 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 B 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 B 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 B 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 B 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 B 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 B 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 B 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 B 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 B 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 B 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 B 303 PHE GLU ARG LYS SEQRES 1 C 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 C 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 C 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 C 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 C 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 C 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 C 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 C 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 C 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 C 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 C 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 C 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 C 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 C 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 C 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 C 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 C 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 C 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 C 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 C 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 C 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 C 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 C 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 C 303 PHE GLU ARG LYS HET EPE A 401 15 HET GOL A 402 6 HET GOL A 403 6 HET LYS B 401 9 HET EPE B 402 15 HET GOL B 403 6 HET EDO B 404 4 HET EDO B 405 4 HET LYS C 401 9 HET EPE C 402 15 HET GOL C 403 6 HET EDO C 404 4 HET GOL C 405 6 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM LYS LYSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EPE 3(C8 H18 N2 O4 S) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 7 LYS 2(C6 H15 N2 O2 1+) FORMUL 10 EDO 3(C2 H6 O2) FORMUL 17 HOH *238(H2 O) HELIX 1 AA1 ASP A 29 GLY A 40 1 12 HELIX 2 AA2 THR A 65 TRP A 88 1 24 HELIX 3 AA3 GLY A 89 LEU A 94 1 6 HELIX 4 AA4 GLY A 106 GLY A 117 1 12 HELIX 5 AA5 ALA A 126 GLU A 128 5 3 HELIX 6 AA6 HIS A 129 CYS A 140 1 12 HELIX 7 AA7 VAL A 142 GLY A 144 5 3 HELIX 8 AA8 SER A 171 PHE A 175 5 5 HELIX 9 AA9 ASP A 176 VAL A 187 1 12 HELIX 10 AB1 ALA A 207 TYR A 215 1 9 HELIX 11 AB2 THR A 220 ALA A 231 1 12 HELIX 12 AB3 ALA A 241 ASP A 263 1 23 HELIX 13 AB4 SER A 267 ALA A 290 1 24 HELIX 14 AB5 ASP B 30 GLY B 40 1 11 HELIX 15 AB6 THR B 65 GLY B 89 1 25 HELIX 16 AB7 GLY B 89 LEU B 94 1 6 HELIX 17 AB8 GLY B 106 GLY B 117 1 12 HELIX 18 AB9 ALA B 126 GLU B 128 5 3 HELIX 19 AC1 HIS B 129 CYS B 140 1 12 HELIX 20 AC2 SER B 171 PHE B 175 5 5 HELIX 21 AC3 ASP B 176 VAL B 187 1 12 HELIX 22 AC4 ALA B 207 TYR B 215 1 9 HELIX 23 AC5 THR B 220 ALA B 231 1 12 HELIX 24 AC6 ALA B 241 LEU B 246 1 6 HELIX 25 AC7 LEU B 246 ASP B 263 1 18 HELIX 26 AC8 SER B 267 ALA B 290 1 24 HELIX 27 AC9 ASP C 45 GLY C 56 1 12 HELIX 28 AD1 THR C 81 TRP C 104 1 24 HELIX 29 AD2 GLY C 105 LEU C 110 1 6 HELIX 30 AD3 GLY C 122 GLY C 133 1 12 HELIX 31 AD4 GLU C 144 GLY C 157 1 14 HELIX 32 AD5 VAL C 158 GLY C 160 5 3 HELIX 33 AD6 SER C 187 PHE C 191 5 5 HELIX 34 AD7 ASP C 192 VAL C 203 1 12 HELIX 35 AD8 ALA C 223 TYR C 231 1 9 HELIX 36 AD9 THR C 236 GLY C 248 1 13 HELIX 37 AE1 ALA C 257 ASP C 279 1 23 HELIX 38 AE2 SER C 283 ALA C 306 1 24 SHEET 1 AA1 7 VAL A 146 VAL A 150 0 SHEET 2 AA1 7 ASP A 119 THR A 124 1 N ALA A 122 O ARG A 147 SHEET 3 AA1 7 ARG A 97 VAL A 101 1 N ASP A 100 O VAL A 123 SHEET 4 AA1 7 TYR A 163 ILE A 169 1 O ASP A 164 N ARG A 97 SHEET 5 AA1 7 LEU A 188 THR A 201 1 O CYS A 195 N ALA A 166 SHEET 6 AA1 7 LEU A 293 ARG A 302 -1 O ARG A 294 N PHE A 200 SHEET 7 AA1 7 PHE A 233 ASP A 240 -1 N VAL A 239 O PHE A 297 SHEET 1 AA2 7 VAL B 146 VAL B 150 0 SHEET 2 AA2 7 ASP B 119 THR B 124 1 N ALA B 122 O ARG B 147 SHEET 3 AA2 7 ARG B 97 VAL B 101 1 N ASP B 100 O VAL B 123 SHEET 4 AA2 7 TYR B 163 ILE B 169 1 O VAL B 167 N LEU B 99 SHEET 5 AA2 7 LEU B 188 THR B 201 1 O CYS B 195 N ALA B 166 SHEET 6 AA2 7 LEU B 293 GLU B 301 -1 O ARG B 294 N PHE B 200 SHEET 7 AA2 7 GLU B 234 ASP B 240 -1 N VAL B 239 O PHE B 297 SHEET 1 AA3 7 VAL C 162 VAL C 166 0 SHEET 2 AA3 7 ASP C 135 THR C 140 1 N ALA C 138 O ARG C 163 SHEET 3 AA3 7 ARG C 113 VAL C 117 1 N ILE C 114 O THR C 137 SHEET 4 AA3 7 TYR C 179 ILE C 185 1 O ASP C 180 N ARG C 113 SHEET 5 AA3 7 LEU C 204 THR C 217 1 O CYS C 211 N ALA C 182 SHEET 6 AA3 7 LEU C 309 GLU C 317 -1 O ARG C 310 N PHE C 216 SHEET 7 AA3 7 GLU C 250 ASP C 256 -1 N VAL C 255 O PHE C 313 CISPEP 1 GLY A 42 PRO A 43 0 6.27 CISPEP 2 GLY B 40 PRO B 41 0 1.47 CISPEP 3 GLY B 42 PRO B 43 0 4.74 CISPEP 4 GLY C 56 PRO C 57 0 4.12 CISPEP 5 GLY C 58 PRO C 59 0 8.24 CRYST1 85.666 118.670 196.111 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005099 0.00000 CONECT 6438 6439 6443 6447 CONECT 6439 6438 6440 CONECT 6440 6439 6441 CONECT 6441 6440 6442 6444 CONECT 6442 6441 6443 CONECT 6443 6438 6442 CONECT 6444 6441 6445 CONECT 6445 6444 6446 CONECT 6446 6445 CONECT 6447 6438 6448 CONECT 6448 6447 6449 CONECT 6449 6448 6450 6451 6452 CONECT 6450 6449 CONECT 6451 6449 CONECT 6452 6449 CONECT 6453 6454 6455 CONECT 6454 6453 CONECT 6455 6453 6456 6457 CONECT 6456 6455 CONECT 6457 6455 6458 CONECT 6458 6457 CONECT 6459 6460 6461 CONECT 6460 6459 CONECT 6461 6459 6462 6463 CONECT 6462 6461 CONECT 6463 6461 6464 CONECT 6464 6463 CONECT 6474 6475 6479 6483 CONECT 6475 6474 6476 CONECT 6476 6475 6477 CONECT 6477 6476 6478 6480 CONECT 6478 6477 6479 CONECT 6479 6474 6478 CONECT 6480 6477 6481 CONECT 6481 6480 6482 CONECT 6482 6481 CONECT 6483 6474 6484 CONECT 6484 6483 6485 CONECT 6485 6484 6486 6487 6488 CONECT 6486 6485 CONECT 6487 6485 CONECT 6488 6485 CONECT 6489 6490 6491 CONECT 6490 6489 CONECT 6491 6489 6492 6493 CONECT 6492 6491 CONECT 6493 6491 6494 CONECT 6494 6493 CONECT 6495 6496 6497 CONECT 6496 6495 CONECT 6497 6495 6498 CONECT 6498 6497 CONECT 6499 6500 6501 CONECT 6500 6499 CONECT 6501 6499 6502 CONECT 6502 6501 CONECT 6512 6513 6517 6521 CONECT 6513 6512 6514 CONECT 6514 6513 6515 CONECT 6515 6514 6516 6518 CONECT 6516 6515 6517 CONECT 6517 6512 6516 CONECT 6518 6515 6519 CONECT 6519 6518 6520 CONECT 6520 6519 CONECT 6521 6512 6522 CONECT 6522 6521 6523 CONECT 6523 6522 6524 6525 6526 CONECT 6524 6523 CONECT 6525 6523 CONECT 6526 6523 CONECT 6527 6528 6529 CONECT 6528 6527 CONECT 6529 6527 6530 6531 CONECT 6530 6529 CONECT 6531 6529 6532 CONECT 6532 6531 CONECT 6533 6534 6535 CONECT 6534 6533 CONECT 6535 6533 6536 CONECT 6536 6535 CONECT 6537 6538 6539 CONECT 6538 6537 CONECT 6539 6537 6540 6541 CONECT 6540 6539 CONECT 6541 6539 6542 CONECT 6542 6541 MASTER 468 0 13 38 21 0 0 6 6771 3 87 72 END