HEADER TRANSFERASE 12-JUL-21 7FBO TITLE GERANYL PYROPHOSPHATE C6-METHYLTRANSFERASE BEZA BINDING WITH S- TITLE 2 ADENOSYLHOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BEZA; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. RI-18-2; SOURCE 3 ORGANISM_TAXID: 1848572; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCOLDI KEYWDS METHYLTRANSFERASE GERANYL PYROPHOSPHATE S-ADENOSYLHOMOCYSTEINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUTSUMI,Y.MORIWAKI,T.TERADA,K.SHIMIZU,Y.KATSUYAMA,Y.OHNISHI REVDAT 4 29-NOV-23 7FBO 1 REMARK REVDAT 3 16-MAR-22 7FBO 1 JRNL REVDAT 2 16-FEB-22 7FBO 1 JRNL REVDAT 1 01-DEC-21 7FBO 0 JRNL AUTH H.TSUTSUMI,Y.MORIWAKI,T.TERADA,K.SHIMIZU,K.SHIN-YA, JRNL AUTH 2 Y.KATSUYAMA,Y.OHNISHI JRNL TITL STRUCTURAL AND MOLECULAR BASIS OF THE CATALYTIC MECHANISM OF JRNL TITL 2 GERANYL PYROPHOSPHATE C6-METHYLTRANSFERASE: CREATION OF AN JRNL TITL 3 UNPRECEDENTED FARNESYL PYROPHOSPHATE C6-METHYLTRANSFERASE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 11217 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 34626048 JRNL DOI 10.1002/ANIE.202111217 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.TSUTSUMI,Y.KATSUYAMA,M.IZUMIKAWA,M.TAKAGI,M.FUJIE,N.SATOH, REMARK 1 AUTH 2 K.SHIN-YA,Y.OHNISHI REMARK 1 TITL UNPRECEDENTED CYCLIZATION CATALYZED BY A CYTOCHROME P450 IN REMARK 1 TITL 2 BENZASTATIN BIOSYNTHESIS. REMARK 1 REF J AM CHEM SOC V. 140 6631 2018 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 29716187 REMARK 1 DOI 10.1021/JACS.8B02769 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 30941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.3400 - 6.1700 1.00 2262 152 0.1532 0.2180 REMARK 3 2 6.1700 - 4.9000 1.00 2145 145 0.1624 0.2202 REMARK 3 3 4.9000 - 4.2800 1.00 2144 145 0.1334 0.1806 REMARK 3 4 4.2800 - 3.8900 1.00 2112 143 0.1504 0.2282 REMARK 3 5 3.8900 - 3.6100 0.99 2109 140 0.1688 0.2581 REMARK 3 6 3.6100 - 3.4000 0.99 2087 142 0.1769 0.2304 REMARK 3 7 3.4000 - 3.2300 0.99 2080 141 0.1964 0.2874 REMARK 3 8 3.2300 - 3.0800 0.98 2061 138 0.2131 0.3071 REMARK 3 9 3.0800 - 2.9700 0.98 2044 136 0.2052 0.3074 REMARK 3 10 2.9700 - 2.8600 0.97 2035 136 0.2182 0.2863 REMARK 3 11 2.8600 - 2.7700 0.95 1982 136 0.2245 0.3354 REMARK 3 12 2.7700 - 2.7000 0.95 1997 135 0.2473 0.3189 REMARK 3 13 2.6900 - 2.6200 0.94 1962 135 0.2474 0.3285 REMARK 3 14 2.6200 - 2.5600 0.94 1969 128 0.2637 0.4129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.329 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.037 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6924 REMARK 3 ANGLE : 1.087 9418 REMARK 3 CHIRALITY : 0.057 986 REMARK 3 PLANARITY : 0.009 1217 REMARK 3 DIHEDRAL : 13.282 1028 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.86400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7FBH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 25% PEG3350, 0.2 REMARK 280 M CH3COONH4. 0.01 M SPERMINE TETRAHYDROCHLORIDE SOAKING USING REMARK 280 0.1 M HEPES (PH7.5), 35% PEG3350, 1.0 MM SAH., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.15450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.71300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.77850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.15450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.71300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 97.77850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.15450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.71300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 97.77850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.15450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.71300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.77850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 120030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 117.42600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 117.42600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 -42.15450 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 -58.71300 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -97.77850 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 42.15450 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 176.13900 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -97.77850 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 42.15450 REMARK 350 BIOMT2 7 0.000000 1.000000 0.000000 -58.71300 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 97.77850 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 -42.15450 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 176.13900 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 97.77850 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 9 1.000000 0.000000 0.000000 -42.15450 REMARK 350 BIOMT2 9 0.000000 1.000000 0.000000 58.71300 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 -97.77850 REMARK 350 BIOMT1 10 -1.000000 0.000000 0.000000 42.15450 REMARK 350 BIOMT2 10 0.000000 -1.000000 0.000000 58.71300 REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 -97.77850 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 42.15450 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 58.71300 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 97.77850 REMARK 350 BIOMT1 12 1.000000 0.000000 0.000000 -42.15450 REMARK 350 BIOMT2 12 0.000000 -1.000000 0.000000 58.71300 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 97.77850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 540 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 THR A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 21 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 ARG B 11 REMARK 465 GLN B 12 REMARK 465 THR B 13 REMARK 465 VAL B 14 REMARK 465 LEU B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 17 REMARK 465 GLN B 18 REMARK 465 ASP B 19 REMARK 465 GLU B 20 REMARK 465 VAL B 21 REMARK 465 LYS B 303 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 LEU C 4 REMARK 465 ASP C 5 REMARK 465 GLU C 6 REMARK 465 LEU C 7 REMARK 465 ALA C 8 REMARK 465 SER C 9 REMARK 465 SER C 10 REMARK 465 ARG C 11 REMARK 465 GLN C 12 REMARK 465 THR C 13 REMARK 465 VAL C 14 REMARK 465 LEU C 15 REMARK 465 GLU C 16 REMARK 465 PRO C 17 REMARK 465 GLN C 18 REMARK 465 ASP C 19 REMARK 465 GLU C 20 REMARK 465 VAL C 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 545 O HOH B 548 2.11 REMARK 500 O ASP C 29 OG1 THR C 32 2.14 REMARK 500 O HOH A 574 O HOH A 575 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 158 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 151 156.68 175.52 REMARK 500 HIS A 155 -61.59 -141.46 REMARK 500 LEU A 156 150.05 -44.22 REMARK 500 ASP A 159 36.55 -92.60 REMARK 500 ALA A 207 37.77 -148.05 REMARK 500 ALA A 241 27.60 -149.24 REMARK 500 THR A 265 30.00 -94.13 REMARK 500 THR B 61 -112.37 -68.94 REMARK 500 HIS B 155 57.99 -160.58 REMARK 500 ARG B 203 158.93 177.16 REMARK 500 THR B 265 55.72 -103.59 REMARK 500 PRO C 41 -108.34 -96.60 REMARK 500 THR C 61 -53.02 -132.14 REMARK 500 LEU C 156 116.09 -39.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 150 CYS A 151 -143.43 REMARK 500 LEU A 156 PRO A 157 145.83 REMARK 500 GLY B 42 PRO B 43 129.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 557 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH C 558 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH C 559 DISTANCE = 8.08 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7FBH RELATED DB: PDB REMARK 900 APO STATE OF THE SAME PROTEIN DBREF 7FBO A 1 303 PDB 7FBO 7FBO 1 303 DBREF 7FBO B 1 303 PDB 7FBO 7FBO 1 303 DBREF 7FBO C 1 303 PDB 7FBO 7FBO 1 303 SEQRES 1 A 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 A 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 A 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 A 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 A 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 A 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 A 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 A 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 A 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 A 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 A 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 A 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 A 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 A 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 A 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 A 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 A 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 A 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 A 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 A 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 A 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 A 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 A 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 A 303 PHE GLU ARG LYS SEQRES 1 B 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 B 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 B 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 B 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 B 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 B 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 B 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 B 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 B 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 B 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 B 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 B 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 B 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 B 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 B 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 B 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 B 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 B 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 B 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 B 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 B 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 B 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 B 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 B 303 PHE GLU ARG LYS SEQRES 1 C 303 MET SER ASN LEU ASP GLU LEU ALA SER SER ARG GLN THR SEQRES 2 C 303 VAL LEU GLU PRO GLN ASP GLU VAL ARG ILE VAL GLY GLN SEQRES 3 C 303 TYR TYR ASP ASP LYS THR ALA LYS LEU VAL ARG LYS TYR SEQRES 4 C 303 GLY PRO GLY PRO ARG ILE HIS TYR HIS VAL GLY TYR TYR SEQRES 5 C 303 PRO SER SER GLU ALA PRO ARG HIS THR ARG ASP VAL THR SEQRES 6 C 303 PRO ASP ALA PHE ARG ARG SER ILE ARG LEU HIS GLN GLU SEQRES 7 C 303 GLY LEU LEU ARG TYR ALA ALA LYS ILE TRP GLY ALA GLU SEQRES 8 C 303 HIS ARG LEU SER GLY ARG ILE LEU ASP VAL GLY CYS GLY SEQRES 9 C 303 LEU GLY GLY GLY SER LEU PHE TRP ALA GLN GLU TYR GLY SEQRES 10 C 303 ALA ASP VAL THR ALA VAL THR ASN ALA PRO GLU HIS ALA SEQRES 11 C 303 PRO ILE VAL GLU GLY PHE ALA ARG GLU CYS GLY VAL GLY SEQRES 12 C 303 GLY ARG VAL ARG THR LEU VAL CYS ASP ALA MET HIS LEU SEQRES 13 C 303 PRO LEU ASP GLY GLY PRO TYR ASP ALA ALA VAL ALA ILE SEQRES 14 C 303 GLU SER SER GLY TYR PHE ASP ARG PRO VAL TRP PHE GLU SEQRES 15 C 303 ARG LEU ALA HIS VAL LEU ARG PRO GLY GLY SER VAL CYS SEQRES 16 C 303 ILE GLU GLU VAL PHE THR THR ARG PRO HIS GLY ALA ASP SEQRES 17 C 303 VAL TRP ALA GLU TYR PHE TYR THR LYS PRO ALA THR VAL SEQRES 18 C 303 LEU ASP TYR ALA GLU ALA ALA LYS ALA ALA GLY PHE GLU SEQRES 19 C 303 LEU VAL ASP ASP VAL ASP ALA THR SER GLU THR LEU PRO SEQRES 20 C 303 PHE TRP GLU GLU SER THR ALA TRP THR LYS ALA VAL LEU SEQRES 21 C 303 ASP SER ASP SER THR LEU SER ALA VAL ASP ARG ARG GLN SEQRES 22 C 303 LEU ARG ILE SER LEU MET ALA ASN GLN ALA LEU GLY ALA SEQRES 23 C 303 GLU TRP GLN ALA GLY GLY LEU ARG LEU GLY PHE LEU ARG SEQRES 24 C 303 PHE GLU ARG LYS HET EPE A 401 15 HET SAH A 402 26 HET SAH B 401 26 HET EPE B 402 15 HET SAH C 401 26 HET EPE C 402 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETSYN EPE HEPES FORMUL 4 EPE 3(C8 H18 N2 O4 S) FORMUL 5 SAH 3(C14 H20 N6 O5 S) FORMUL 10 HOH *197(H2 O) HELIX 1 AA1 ARG A 22 LYS A 31 1 10 HELIX 2 AA2 LYS A 31 TYR A 39 1 9 HELIX 3 AA3 THR A 65 GLY A 89 1 25 HELIX 4 AA4 GLY A 89 LEU A 94 1 6 HELIX 5 AA5 GLY A 106 GLY A 117 1 12 HELIX 6 AA6 GLU A 128 CYS A 140 1 13 HELIX 7 AA7 VAL A 142 GLY A 144 5 3 HELIX 8 AA8 SER A 171 PHE A 175 5 5 HELIX 9 AA9 ASP A 176 VAL A 187 1 12 HELIX 10 AB1 ALA A 207 TYR A 215 1 9 HELIX 11 AB2 THR A 220 GLY A 232 1 13 HELIX 12 AB3 ALA A 241 LEU A 246 1 6 HELIX 13 AB4 LEU A 246 ASP A 263 1 18 HELIX 14 AB5 SER A 267 ALA A 290 1 24 HELIX 15 AB6 ILE B 23 LYS B 31 1 9 HELIX 16 AB7 LYS B 31 GLY B 40 1 10 HELIX 17 AB8 THR B 65 GLY B 89 1 25 HELIX 18 AB9 GLY B 89 LEU B 94 1 6 HELIX 19 AC1 GLY B 106 GLY B 117 1 12 HELIX 20 AC2 GLU B 128 CYS B 140 1 13 HELIX 21 AC3 SER B 171 PHE B 175 5 5 HELIX 22 AC4 ASP B 176 VAL B 187 1 12 HELIX 23 AC5 ALA B 207 TYR B 215 1 9 HELIX 24 AC6 THR B 220 ALA B 231 1 12 HELIX 25 AC7 ALA B 241 ASP B 263 1 23 HELIX 26 AC8 SER B 267 ALA B 290 1 24 HELIX 27 AC9 ILE C 23 LYS C 31 1 9 HELIX 28 AD1 LYS C 31 GLY C 40 1 10 HELIX 29 AD2 THR C 65 TRP C 88 1 24 HELIX 30 AD3 GLY C 89 LEU C 94 1 6 HELIX 31 AD4 GLY C 106 TYR C 116 1 11 HELIX 32 AD5 ALA C 126 GLU C 128 5 3 HELIX 33 AD6 HIS C 129 CYS C 140 1 12 HELIX 34 AD7 SER C 171 PHE C 175 5 5 HELIX 35 AD8 ASP C 176 VAL C 187 1 12 HELIX 36 AD9 ALA C 207 TYR C 215 1 9 HELIX 37 AE1 THR C 220 ALA C 231 1 12 HELIX 38 AE2 ALA C 241 LEU C 246 1 6 HELIX 39 AE3 LEU C 246 ASP C 263 1 18 HELIX 40 AE4 SER C 267 ALA C 290 1 24 SHEET 1 AA1 7 VAL A 146 VAL A 150 0 SHEET 2 AA1 7 ASP A 119 THR A 124 1 N ALA A 122 O ARG A 147 SHEET 3 AA1 7 ARG A 97 VAL A 101 1 N ASP A 100 O VAL A 123 SHEET 4 AA1 7 TYR A 163 ILE A 169 1 O VAL A 167 N LEU A 99 SHEET 5 AA1 7 LEU A 188 THR A 201 1 O CYS A 195 N ALA A 166 SHEET 6 AA1 7 LEU A 293 ARG A 302 -1 O ARG A 294 N PHE A 200 SHEET 7 AA1 7 PHE A 233 ASP A 240 -1 N GLU A 234 O GLU A 301 SHEET 1 AA2 7 VAL B 146 VAL B 150 0 SHEET 2 AA2 7 ASP B 119 THR B 124 1 N ALA B 122 O ARG B 147 SHEET 3 AA2 7 ARG B 97 VAL B 101 1 N ASP B 100 O THR B 121 SHEET 4 AA2 7 TYR B 163 ILE B 169 1 O ASP B 164 N ARG B 97 SHEET 5 AA2 7 LEU B 188 THR B 201 1 O CYS B 195 N ALA B 166 SHEET 6 AA2 7 LEU B 293 GLU B 301 -1 O ARG B 294 N PHE B 200 SHEET 7 AA2 7 GLU B 234 ASP B 240 -1 N GLU B 234 O GLU B 301 SHEET 1 AA3 7 VAL C 146 VAL C 150 0 SHEET 2 AA3 7 ASP C 119 THR C 124 1 N ALA C 122 O ARG C 147 SHEET 3 AA3 7 ARG C 97 VAL C 101 1 N ASP C 100 O THR C 121 SHEET 4 AA3 7 TYR C 163 ILE C 169 1 O VAL C 167 N LEU C 99 SHEET 5 AA3 7 LEU C 188 THR C 201 1 O CYS C 195 N ALA C 166 SHEET 6 AA3 7 LEU C 293 ARG C 302 -1 O LEU C 298 N ILE C 196 SHEET 7 AA3 7 PHE C 233 ASP C 240 -1 N GLU C 234 O GLU C 301 CISPEP 1 GLY A 42 PRO A 43 0 -3.98 CISPEP 2 GLY B 40 PRO B 41 0 -0.21 CISPEP 3 GLY C 40 PRO C 41 0 4.87 CRYST1 84.309 117.426 195.557 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005114 0.00000